Clone Information

BLAST Search Result

Clone Name	bast17g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	34	0.072
2	CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6	31	0.61
3	KPC1_ASPNG (Q00078) Protein kinase C-like (EC 2.7.11.13)	31	0.61
4	TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DN...	31	0.61
5	PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)	30	1.0
6	HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High...	30	1.0
7	VNUA_PRVKA (P33485) Probable nuclear antigen	30	1.0
8	CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa colle...	30	1.4
9	PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early de...	30	1.4
10	MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [C...	30	1.8
11	HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-m...	29	2.3
12	HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High...	29	2.3
13	HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High...	29	2.3
14	HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High...	29	2.3
15	UL06_HHV11 (P10190) Virion protein UL6	29	2.3
16	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	29	2.3
17	B2L13_MOUSE (P59017) Bcl-2-like 13 protein (Mil1 protein) (Bcl-r...	29	3.0
18	M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kin...	29	3.0
19	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	28	4.0
20	MYB3_HORVU (P20027) Myb-related protein Hv33	28	4.0
21	UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC ...	28	4.0
22	MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1	28	4.0
23	IRK5_MOUSE (P48545) G protein-activated inward rectifier potassi...	28	5.2
24	SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,...	28	5.2
25	PKHG4_HUMAN (Q58EX7) Puratrophin-1 (Pleckstrin homology domain-c...	28	5.2
26	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	28	5.2
27	ATKB_ENTFA (Q8KU73) Potassium-transporting ATPase B chain (EC 3....	28	5.2
28	PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-s...	28	5.2
29	YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-...	28	5.2
30	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	28	5.2
31	EP15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate ...	28	5.2
32	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	28	6.8
33	NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neur...	28	6.8
34	HMGN2_HUMAN (P05204) Nonhistone chromosomal protein HMG-17 (High...	28	6.8
35	S2A4R_HUMAN (Q9NR83) SLC2A4 regulator (GLUT4 enhancer factor) (G...	28	6.8
36	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	28	6.8
37	DDX43_HUMAN (Q9NXZ2) Probable ATP-dependent RNA helicase DDX43 (...	28	6.8
38	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	28	6.8
39	FOXD2_MOUSE (O35392) Forkhead box protein D2 (Mesoderm/mesenchym...	28	6.8
40	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	27	8.8
41	PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1...	27	8.8
42	TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR re...	27	8.8
43	STAR8_HUMAN (Q92502) StAR-related lipid transfer protein 8 (StAR...	27	8.8
44	Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007	27	8.8
45	IF2_SYNY3 (P72689) Translation initiation factor IF-2	27	8.8
46	HMGN2_RAT (P18437) Nonhistone chromosomal protein HMG-17 (High-m...	27	8.8
47	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	27	8.8
48	NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilamen...	27	8.8
49	M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kin...	27	8.8
50	RHG08_HUMAN (Q9NSG0) Rho-GTPase-activating protein 8	27	8.8
51	CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor	27	8.8
52	CF136_HUMAN (Q5SQH8) Protein C6orf136	27	8.8
53	PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early de...	27	8.8
54	GSK3A_HUMAN (P49840) Glycogen synthase kinase-3 alpha (EC 2.7.11...	27	8.8
55	CU070_HUMAN (Q9NSI2) Protein C21orf70	27	8.8

>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
 Frame = -3

Query: 394 AGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRG--PCGV*SXXXXXXXXXXXXXXEL 221
           AG  G RP       RP+G GD GP P    G+ RG  P G                   
Sbjct: 258 AGDRGPRPGGDNRGPRPAGAGDRGPRPG---GDNRGPRPAGAGDRGPRPAPAAAAPSQPP 314

Query: 220 AVGAKSSRPGPGNSG 176
           A     SRPG G  G
Sbjct: 315 APAPGGSRPGKGKKG 329

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>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 381 AGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERDG 244
           AGD   ++GP GRA + +  P  SGD G+   +AE    + GE  G
Sbjct: 276 AGDSMDAEGPAGRARRVSGEPQQSGD-GSLSPQAEAIEVAAGESAG 320

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>KPC1_ASPNG (Q00078) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1096

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 400 DAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGE 296
           D AGG G        S  PSG G PG  P +G+G+
Sbjct: 370 DTAGGAG--------SAHPSGPGGPGAAPSQGYGD 396

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>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 406 PADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
           P    GG GR   +  WS  P G G  G G   G+G   G  G
Sbjct: 777 PGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGG 819

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>PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)|
          Length = 388

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 406 PADAAGGHGRRPQAKRWSVRPSGEGDPG---PGPQRGFGERRGP 284
           P   AG  GRR +      R +G G  G   PGP+RG   RR P
Sbjct: 76  PGVVAGPGGRRARRAAGPARAAGLGRGGHRRPGPRRGVDRRRRP 119

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>HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKAEGAGD 87

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
 Frame = -3

Query: 403  ADAAGGHGRRPQAKRWSVRP---------SGEGDPGPGPQRGFGE 296
            A  AGG  RR + +RW             +G G  GPGP+ G GE
Sbjct: 998  AGEAGGGARRRRRRRWDDEAGLLGPERGQAGRGLRGPGPRGGLGE 1042



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   RR  GP GR G+         + G   A A+   E +G+ D
Sbjct: 293 PPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAE-GTEAAAADAEEEEDGDGD 346

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>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)|
          Length = 321

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 406 PADAAGGHGRRPQAKRWSVRPSGE-GDPGPGPQRGFGERRGPCG 278
           PAD+  GH  R   +     P GE GDPGP    G   R GP G
Sbjct: 43  PADSLRGHDGRDGKEG----PQGEKGDPGPPGMPGPAGREGPSG 82

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>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early development|
           regulatory protein 1)
          Length = 1004

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 169 QPCPNFPVQACSTSRPPRA------LADDHRAVPLSLALPTTLRTG 288
           QP P+ PVQ   T +P  A      LA    AVP S  +P T+++G
Sbjct: 520 QPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSRGMPGTVQSG 565

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>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1|
            light chain LC2]
          Length = 2774

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 411  PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNG--EARAECSRE 265
            P  P P A++  DL  +  P        PAP L GDLG+G    R EC+ E
Sbjct: 2274 PLSPAPSASL--DLAPAPAP-----APAPAPGLPGDLGDGTLPCRPECTGE 2317

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>HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGD 87

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>HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGD 87

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>HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    + +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAAPKKSEKVPKGKKGKADAGKEGNNPAENGDAKTDQAQKAEGAGD 87

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>HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGD 87

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>UL06_HHV11 (P10190) Virion protein UL6|
          Length = 676

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATP------APDLSGDLGNGEARAECSR 268
           P PP+P+ A   D R    P GR+   +P      APD  G +G+ + R +  R
Sbjct: 626 PPPPSPVGA---DFRPGASPRGRSRSRSPGRTARGAPDQGGGIGHRDGRRDGRR 676

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -3

Query: 403 ADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
           A   GG G RP    ++ RP G G   PG   GF  R G  G
Sbjct: 328 AGRPGGGGGRPGGGGFAGRPGGGGGGRPGGGGGFAGRPGGGG 369

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>B2L13_MOUSE (P59017) Bcl-2-like 13 protein (Mil1 protein) (Bcl-rambo)|
          Length = 434

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 345 RAGKATPAPDLSGDLGNGEARAECSRESEGER-DGAVVISESSRWARSRA 199
           RA K +P P +  +LG  E  A  +R    ER +GA  +SE    +R ++
Sbjct: 338 RAEKTSPTPSVFVELGEEELEAVTARPEAVERAEGAAQLSEERAGSRKKS 387

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>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 859

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
 Frame = -1

Query: 405 PPTPLAAMAGDLRRSDGPYGRAGKA---------TPAPDL-SGDLGNGEARAECSRESEG 256
           PP P+    G      G  G +G+          TPA  L    +   + R   S E EG
Sbjct: 665 PPPPVGPGEGVGLLGTGREGTSGRGGSRAGSQHLTPAALLYRAAVTRSQKRGISSEEEEG 724

Query: 255 ERDGAVVISESSRWARS 205
           E D  V ++ S RW +S
Sbjct: 725 EVDSEVELTSSQRWPQS 741

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 405 PPTPLAAMAGDLRRSDG-PYGRAGKATPAPDLSG--DLGNG-EARAECSRESEGERDGAV 238
           PP+ L  ++  LR  +G P G   +  P     G   L +   ARA   R  E E +  V
Sbjct: 375 PPSLLGYLS--LRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEV 432

Query: 237 VISESSRWARSRA 199
           V +E   WAR R+
Sbjct: 433 VEAEEETWARGRS 445

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>MYB3_HORVU (P20027) Myb-related protein Hv33|
          Length = 302

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 318 DLSGDLGNGEARAECSRESEGERDGAVVISESSRWARSRAGLDREIRARLH 166
           D+S +LG GE+ +  S  + G   G+V+  E   WA++        R + H
Sbjct: 222 DVSENLGYGESSSNSSNWNYGGEVGSVLDGEVPHWAKAEPAFAEMERQQQH 272

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>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
           (hUBPy)
          Length = 1118

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 256 SLALPTTLRTGLSVPQIPAEVRGRGRLPRSAVRTIASPEVACHGRQRRRRE 408
           S A P+T  T  + PQIPAE   R R P    R+ +SP++    ++  +R+
Sbjct: 686 SSAPPSTPPTHKAKPQIPAE---RDREPSKLKRSYSSPDITQAIQEEEKRK 733

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>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 172  PCPNFPVQACSTSRP----PRALADDHRAVPLSLALPTTLRTGLSVPQIPAEVRGRGRLP 339
            P  + P+ + ST +P    P +    HR+   +  L     TG  V   P     RGR  
Sbjct: 1353 PAASEPLPSASTDQPITPKPTSRGRAHRSSAKTPELQPPTSTGQPVTPRPTSQATRGRTH 1412

Query: 340  RSAVRT 357
            RS+++T
Sbjct: 1413 RSSIKT 1418

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>IRK5_MOUSE (P48545) G protein-activated inward rectifier potassium channel 4|
           (GIRK4) (Potassium channel, inwardly rectifying
           subfamily J member 5) (Inward rectifier K(+) channel
           Kir3.4) (Heart KATP channel) (KATP-1) (Cardiac inward
           rectifier) (CIR)
          Length = 419

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -1

Query: 402 PTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERDGAVVISES 223
           P+  A    +++RS    GR  +  P+P L G        AE  ++ EGE +G + +S++
Sbjct: 360 PSCCAKELAEMKRS----GRLLQYLPSPPLLGGCAEAGNEAEAEKDEEGEPNG-LSVSQA 414

Query: 222 SR 217
           +R
Sbjct: 415 TR 416

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>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,|
           arginine/serine-rich 2-interacting protein)
           (SC35-interacting protein 1) (CTD-associated SR protein
           11) (Splicing regulatory protein 129) (SRrp129)
           (NY-REN-40 antigen)
          Length = 1148

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 306 DLGNGEARAECSRESEGERDGAVVISE--SSRWARSRAGLDREIRARLHWNSSS 151
           D   GE     SRE E +RDG     E  + +W+RSR+      R R    SSS
Sbjct: 585 DSSPGEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSS 638

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>PKHG4_HUMAN (Q58EX7) Puratrophin-1 (Pleckstrin homology domain-containing|
           family G member 4) (Purkinje cell atrophy-associated
           protein 1)
          Length = 1191

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEG 256
           P PP P A    D      P  R  +  PA D SGD   G   +  S  SEG
Sbjct: 46  PGPPRPPAGATQDEELQGSPLSRKFQLPPAADESGDAQRGTVESS-SVLSEG 96

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 406  PADAAGGHGRRPQAKRWSV--RPSGEGDPGPGPQRGFGERRGPCG 278
            PA + G  G    A    +  RP  +G PGP  ++G    +GP G
Sbjct: 1085 PAGSPGERGPAGSAGPIGIPGRPGPQGPPGPAGEKGLPGEKGPQG 1129

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>ATKB_ENTFA (Q8KU73) Potassium-transporting ATPase B chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase B chain) (ATP
           phosphohydrolase [potassium-transporting] B chain)
           (Potassium-binding and translocating subunit B)
          Length = 676

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
 Frame = -1

Query: 381 AGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECS----------RESEGERD----G 244
           + DL+R+D  Y RAG+  PA    GD+  G A  + S          RES G+R     G
Sbjct: 112 SSDLKRNDLVYVRAGEQIPA---DGDVIEGAASVDESAITGESAPVIRESGGDRSAVTGG 168

Query: 243 AVVISE 226
             V+S+
Sbjct: 169 TTVVSD 174

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>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 342 AGKATPAPDLSGDL-GNGEARAECSRESEGERDGAV 238
           +G+A+ APDLSGD  G+G+A      +S G+  G +
Sbjct: 810 SGEASGAPDLSGDFTGSGDASGRL--DSSGQPSGGI 843

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>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein|
           p56) (mRNP4)
          Length = 336

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -1

Query: 411 PFPPTPLAAMAGD------LRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGE 253
           P  PT  A  +GD       RR    + R  +  PAP  + + G+GEA+AE   +   E
Sbjct: 207 PVAPTSEALASGDDPQRPPPRRFRQRFRRPFRPRPAPQQTPEGGDGEAKAESGEDPRPE 265

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 373 PQAKRWSVRPSGEGDPGPGPQRGFGERRGP 284
           P+ +R + RP G G P PGP +G G R GP
Sbjct: 189 PERERPAARP-GPGGPRPGPAQG-GPRPGP 216

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>EP15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate 15-like 1|
           (Eps15-related protein) (Eps15R)
          Length = 864

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 336 KATPAPDLSGDLGNGEARAECSRESEGERDGAVVISESSRWARSRAGLDREIRAR 172
           + TP PD SG LG+G        E  G ++   +  E ++  R +  L+++IR +
Sbjct: 364 RGTPGPDSSGSLGSG--------EFTGVKELDDISQEIAQLQREKYSLEQDIREK 410

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 382 GRRPQ-AKRWSV-RPSGEGDPGPGPQRGFGERRGPCG 278
           GR P+ AKR    RPS  G P  GP  G G   GP G
Sbjct: 503 GRHPEDAKRQPRGRPSSSGTPRDGPAGGTGGSGGPGG 539

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>NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
           (Neurofilament 3)
          Length = 915

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = +1

Query: 172 PCPNFPVQACSTSRPPRALADDHRAVPLSLALPTTLRTGLSVPQIPAEVRGRGRLPRSAV 351
           P P  PV+    S  P++  ++    P+  + P   +    V + P E + +  +P+S V
Sbjct: 628 PVPKSPVEEKGKSPVPKSPVEEKGKSPVPKS-PVEEKGKSPVSKSPVEEKAKSPVPKSPV 686

Query: 352 RTIASPEVACHGRQRRRRER 411
               S      G Q+   E+
Sbjct: 687 EEAKSKAEVGKGEQKEEEEK 706

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>HMGN2_HUMAN (P05204) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    + +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKEGNNPAENGDAKTDQAQKAEGAGD 87

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>S2A4R_HUMAN (Q9NR83) SLC2A4 regulator (GLUT4 enhancer factor) (GEF) (Huntington|
           disease gene regulatory region-binding protein 1)
           (HDBP-1)
          Length = 387

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 402 PTPLAAMAGDLRRSDGPYGRAGKAT-PAPDLSGDLGNGEARAECSRESEGERDGAVVISE 226
           P+ L A A  LR ++GP  RA   T P P     +G G A  E +R  E E   A  +  
Sbjct: 13  PSALRAEAPWLR-AEGPGPRAAPVTVPTPPQGSSVGGGFAGLEFARPQESE-PRASDLGA 70

Query: 225 SSRWARSRAG 196
              W  + AG
Sbjct: 71  PRTWTGAAAG 80

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 382 GRRPQ-AKRWSV-RPSGEGDPGPGPQRGFGERRGPCG 278
           GR P+ AKR    RPS  G P  GP  G G   GP G
Sbjct: 503 GRHPEDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGG 539

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>DDX43_HUMAN (Q9NXZ2) Probable ATP-dependent RNA helicase DDX43 (EC 3.6.1.-)|
           (DEAD box protein 43) (DEAD box protein HAGE) (Helical
           antigen)
          Length = 648

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 205 TSRPPRALADDHRAVPLSLAL 267
           TSRPP A+A  H  +PL  AL
Sbjct: 54  TSRPPEAVAAGHEELPLCFAL 74

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = -3

Query: 406  PADAAGGHGRRPQAKRWSVRPSGEGDPGP----GPQRGFGER--RGPCG 278
            P+ A G  G   Q    S +P   GDPGP    GP   FG R   GP G
Sbjct: 954  PSGALGAPGPHGQVGP-SGKPGNRGDPGPVGPVGPAGAFGPRGLAGPQG 1001

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>FOXD2_MOUSE (O35392) Forkhead box protein D2 (Mesoderm/mesenchyme forkhead 2)|
           (MF-2)
          Length = 492

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -3

Query: 403 ADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGP 284
           A AAG  G   QA R +  P     PGPGP  G    R P
Sbjct: 91  AAAAGSPGPGVQAARGATGPG----PGPGPPSGGAATRSP 126

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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 388 GHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
           G G  PQ +++     G G+ GPG  +G+G   GP G
Sbjct: 238 GWGTSPQQQQY-----GYGNSGPGSYQGWGAPPGPQG 269

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>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Brn-3.0)
          Length = 421

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = -3

Query: 403 ADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
           A AAGG G           P G G PG G   G G   GP G
Sbjct: 134 AGAAGGGGGAHDGPGGGGGPGGGGGPGGGGPGGGGGGGGPGG 175

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>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein|
           15)
          Length = 735

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = -3

Query: 361 RWSVRPSGEGDPGP---GPQRGFGERRGPCGV*SXXXXXXXXXXXXXXELAVGAKSSRP 194
           R    P GEGDPGP   G     GE  G C                      G++++RP
Sbjct: 89  RDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARP 147

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>STAR8_HUMAN (Q92502) StAR-related lipid transfer protein 8 (StARD8) (START|
           domain-containing protein 8)
          Length = 1023

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 LSVPQIPAEVRGRGRLPRSAVRTIASPEVACHGRQRRRRER 411
           +S+P  PA++   GR P S+ R + SP     G Q + ++R
Sbjct: 83  VSLPPEPADLPLPGRAPSSSDRPLLSPTQGQEGPQDKAKKR 123

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>Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007|
          Length = 304

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -1

Query: 399 TPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERDGAVVISESS 220
           +P  A A +L    GP  RA +  PAP    + G G +R + +  S G R     I+  S
Sbjct: 117 SPAEAYASELPDLSGPTPRAPQRNPAPARPAEGGAG-SRGDSAAGSSGGRS----ITAES 171

Query: 219 RWAR 208
           R AR
Sbjct: 172 RDAR 175

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>IF2_SYNY3 (P72689) Translation initiation factor IF-2|
          Length = 1001

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGK----ATPAP 319
           P PPTP A  A    R  GP GR       A PAP
Sbjct: 166 PAPPTPPAKKAAPAPRLAGPPGRTASPNKTAVPAP 200

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>HMGN2_RAT (P18437) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    +G+A+ + +++++G  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAEDGDAKTDQAQKADGAGD 87

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>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -3

Query: 403 ADAAGGHGRRPQAKRWSVR----PSGEGDPGPGPQRGFG 299
           A AAGG G  P  +R  V      +GEGDPG     G G
Sbjct: 10  AGAAGGRGSGPGRRRHLVPGAGGEAGEGDPGGAGDYGNG 48

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>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light|
           polypeptide) (NF-L)
          Length = 543

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 309 GDLGNGEARAECSRESEGERDGAVVISESS 220
           G+ G GEA AE   E EGE  G     E S
Sbjct: 507 GEEGEGEAEAEGDGEEEGESKGDEAAEEES 536

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>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
 Frame = -1

Query: 405 PPTPLAAMAGDLRRSDGPYGRAGKA---------TPAPDL-SGDLGNGEARAECSRESEG 256
           PP P+    G      G  G AG+          TPA  L    +   + R   S E EG
Sbjct: 698 PPPPVGPGEGVGLLGTGREGTAGRGGNRAGSQHLTPAALLYRAAVTRSQKRGISSEEEEG 757

Query: 255 ERDGAVVISESSRW 214
           E D  V +  S RW
Sbjct: 758 EVDSEVELPPSQRW 771

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>RHG08_HUMAN (Q9NSG0) Rho-GTPase-activating protein 8|
          Length = 718

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 241 RAVPLSLALPTTLRTGLSVPQIP 309
           RA PL  A+P T  TGL+ P +P
Sbjct: 685 RAAPLQEAVPRTQATGLTKPTLP 707

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>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 406  PADAAGGHGRRPQAKRWSV--RPSGEGDPGPGPQRGFGERRGPCG 278
            PA + G  G    A    +  RP  +G PGP  ++G    +GP G
Sbjct: 1087 PAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVPGEKGPQG 1131

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>CF136_HUMAN (Q5SQH8) Protein C6orf136|
          Length = 315

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 358 WSVRPSGEGDPGPGPQ 311
           W V P G+G+ GPGP+
Sbjct: 83  WVVLPPGKGEEGPGPE 98

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>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development|
           regulatory protein 1) (RAE-28)
          Length = 1012

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 QPCPNFPVQACSTSRPPRALADDHRAVPLSLALPT 273
           QP P+ PVQ   T +P  A A       L+ A+PT
Sbjct: 527 QPPPHIPVQVVGTRQPGSAQAQALGLAQLAAAVPT 561

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>GSK3A_HUMAN (P49840) Glycogen synthase kinase-3 alpha (EC 2.7.11.26) (GSK-3|
           alpha)
          Length = 483

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = -3

Query: 397 AAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCGV*SXXXXXXXXXXXXXXELA 218
           + GG G   +A+  S    G G  G G   G G   GP G                    
Sbjct: 7   SGGGPGGSGRARTSSFAEPGGGGGGGGGGPG-GSASGPGGTGGGKASVGAMGG------G 59

Query: 217 VGAKSSRPGPGNSG 176
           VGA SS  GPG SG
Sbjct: 60  VGASSSGGGPGGSG 73

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>CU070_HUMAN (Q9NSI2) Protein C21orf70|
          Length = 230

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 382 GRRPQAKRWSVRPSGEGDPGPGP 314
           G R +  + +VRP GE  PGP P
Sbjct: 6   GLRARVHQAAVRPKGEAAPGPAP 28


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,094,852
Number of Sequences: 219361
Number of extensions: 763624
Number of successful extensions: 3960
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 3313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3944
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result