ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast17f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 307 bits (155), Expect = 1e-80 Identities = 188/199 (94%) Strand = Plus / Minus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 145 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 105281 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 105222 Query: 146 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 205 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 105221 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 105162 Query: 206 gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105161 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 105102 Query: 266 tgggacccccagatcagcc 284 ||||| ||||||||||||| Sbjct: 105101 tgggatccccagatcagcc 105083
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 307 bits (155), Expect = 1e-80 Identities = 188/199 (94%) Strand = Plus / Plus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 145 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 27073610 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 27073669 Query: 146 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 205 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 27073670 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 27073729 Query: 206 gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27073730 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 27073789 Query: 266 tgggacccccagatcagcc 284 ||||| ||||||||||||| Sbjct: 27073790 tgggatccccagatcagcc 27073808
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 307 bits (155), Expect = 1e-80 Identities = 188/199 (94%) Strand = Plus / Plus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 145 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 27164933 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 27164992 Query: 146 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 205 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 27164993 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 27165052 Query: 206 gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27165053 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 27165112 Query: 266 tgggacccccagatcagcc 284 ||||| ||||||||||||| Sbjct: 27165113 tgggatccccagatcagcc 27165131
>dbj|AK062981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F03, full insert sequence Length = 583 Score = 307 bits (155), Expect = 1e-80 Identities = 188/199 (94%) Strand = Plus / Plus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggaggacccggagcagcgggacgag 145 |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct: 50 atggagttcgcggagaacctgatcctgcggatgatggaggacccggggaagcgggacgcg 109 Query: 146 gcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcaccaaggcggcctgg 205 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 110 gcgcagcgggagcacgtgtaccggatgaaggagcggtgcgagcgcaccaaggcggcgtgg 169 Query: 206 gcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 170 agcctcccgctccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcc 229 Query: 266 tgggacccccagatcagcc 284 ||||| ||||||||||||| Sbjct: 230 tgggatccccagatcagcc 248
>gb|AY106192.1| Zea mays PCO072441 mRNA sequence Length = 708 Score = 220 bits (111), Expect = 3e-54 Identities = 186/211 (88%) Strand = Plus / Plus Query: 74 atgggattcatcatggagttcgcggagaacctgatcctgcggctgatggaggacccggag 133 ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 151 atgggtttcatcatggacttcgcggagaatctgatcctccgtctgatggaggacccggac 210 Query: 134 cagcgggacgaggcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcacc 193 |||| ||| ||| | ||||| ||| |||||| |||||||||||||||||||||||| Sbjct: 211 aagcgcgaccaggttcggcgggagcatgtctacaagatgaaggagcggtgcgagcgcact 270 Query: 194 aaggcggcctgggcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaac 253 |||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 271 aaggcggcgtggagcctccctctgcgcccctacggcttctggaccttcgaccgcttcaac 330 Query: 254 tcccagctctcctgggacccccagatcagcc 284 || |||||||||||||| ||||||||||||| Sbjct: 331 tcgcagctctcctgggatccccagatcagcc 361
>gb|BT016356.1| Zea mays clone Contig189 mRNA sequence Length = 636 Score = 204 bits (103), Expect = 2e-49 Identities = 184/211 (87%) Strand = Plus / Plus Query: 74 atgggattcatcatggagttcgcggagaacctgatcctgcggctgatggaggacccggag 133 ||||| ||||||||||| ||||||||||| ||||||| || ||||||||||||||||| Sbjct: 97 atgggtttcatcatggacttcgcggagaatatgatcctccgtctgatggaggacccggac 156 Query: 134 cagcgggacgaggcgcagcgggcgcacgtctaccggatgaaggagcggtgcgagcgcacc 193 |||| ||| ||| | ||||| ||| |||||| ||||||||||||||||||||||| Sbjct: 157 aagcgcgaccaggttcggcgggagcatgtctacaaaatgaaggagcggtgcgagcgcact 216 Query: 194 aaggcggcctgggcgctcccgctccgcccctacggcttctggaccttcgaccgcttcaac 253 |||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 217 aaggcggcgtggagcctccctctgcgcccctacggcttctggaccttcgaccgcttcaac 276 Query: 254 tcccagctctcctgggacccccagatcagcc 284 || |||||||||||||| ||||||||||||| Sbjct: 277 tcgcagctctcctgggatccccagatcagcc 307
>gb|AY389672.1| Hyacinthus orientalis unknown mRNA Length = 621 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 216 tccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcctgggaccccc 275 ||||||| ||||| ||||||||||||||||| |||||| |||||||| |||||||| | | Sbjct: 220 tccgcccttacggattctggaccttcgaccggttcaacgcccagctcgcctgggacgctc 279 Query: 276 agatcagcc 284 ||||||||| Sbjct: 280 agatcagcc 288 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggagga 126 ||||||||||| ||||| |||||||| || |||||||||| Sbjct: 90 atggagttcgctgagaatctgatccttcgtatgatggagga 130
>gb|AY389729.1| Hyacinthus orientalis At1g67350-like protein mRNA, complete cds Length = 628 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 216 tccgcccctacggcttctggaccttcgaccgcttcaactcccagctctcctgggaccccc 275 ||||||| ||||| ||||||||||||||||| |||||| |||||||| |||||||| | | Sbjct: 215 tccgcccttacggattctggaccttcgaccggttcaacgcccagctcgcctgggacgctc 274 Query: 276 agatcagcc 284 ||||||||| Sbjct: 275 agatcagcc 283 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggagga 126 ||||||||||| ||||| |||||||| || |||||||||| Sbjct: 85 atggagttcgctgagaatctgatccttcgtatgatggagga 125
>gb|AY389726.1| Hyacinthus orientalis unknown mRNA Length = 650 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 218 cgcccctacggcttctggaccttcgaccgcttcaactcccagctctcctgggacccccag 277 ||||| ||||| ||||||||||||||||| |||||| | |||||| |||||||| | ||| Sbjct: 218 cgcccgtacggattctggaccttcgaccggttcaacgcacagctcgcctgggactctcag 277 Query: 278 atcagcc 284 ||||||| Sbjct: 278 atcagcc 284 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 86 atggagttcgcggagaacctgatcctgcggctgatggagga 126 ||||||||||| ||||| |||||||| || |||||||||| Sbjct: 86 atggagttcgctgagaatctgatccttcgtatgatggagga 126
>gb|AF366446.1|AF366446 Allium cepa clone AGF125 maintainer line sequence Length = 498 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 79 attcatcatggagttcgcggagaacctgatcct 111 |||||| |||||||||||||||||||| ||||| Sbjct: 468 attcataatggagttcgcggagaacctaatcct 436
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 103 cctgatcctgcggctgatggagga 126 |||||||||||||||||||||||| Sbjct: 1092745 cctgatcctgcggctgatggagga 1092768
>dbj|AB189463.1| Rhodobacter sphaeroides f. sp. denitrificans treY gene for maltoologosyl trehalose synthase, complete cds Length = 2616 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 103 cctgatcctgcggctgatggagga 126 |||||||||||||||||||||||| Sbjct: 867 cctgatcctgcggctgatggagga 890
>gb|AC116993.2| Homo sapiens chromosome 1 clone RP4-561P1, complete sequence Length = 101893 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 actcccagctctcctgggacc 272 ||||||||||||||||||||| Sbjct: 95625 actcccagctctcctgggacc 95645
>ref|XM_882793.1| PREDICTED: Bos taurus hypothetical protein LOC617405 (LOC617405), mRNA Length = 780 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 gagcagcgggacgaggcgcagcgggcgc 158 ||||||||||| |||| ||||||||||| Sbjct: 237 gagcagcgggaggaggagcagcgggcgc 210
>gb|BC102654.1| Bos taurus cDNA clone IMAGE:7956015, partial cds Length = 1186 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 131 gagcagcgggacgaggcgcagcgggcgc 158 ||||||||||| |||| ||||||||||| Sbjct: 13 gagcagcgggaggaggagcagcgggcgc 40
>ref|XM_310742.2| Anopheles gambiae str. PEST ENSANGP00000010052 (ENSANGG00000007563), partial mRNA Length = 1491 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 atgggattcatcatggagtt 93 |||||||||||||||||||| Sbjct: 827 atgggattcatcatggagtt 808
>gb|AY675212.1| Oryzias latipes hypothetical protein mRNA, partial cds Length = 681 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cctgatcctgcggctgatgg 122 |||||||||||||||||||| Sbjct: 192 cctgatcctgcggctgatgg 173 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,615,759 Number of Sequences: 3902068 Number of extensions: 1615759 Number of successful extensions: 34112 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34009 Number of HSP's gapped (non-prelim): 103 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
