| Clone Name | bast17e10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 109 bits (55), Expect = 6e-21 Identities = 106/123 (86%) Strand = Plus / Plus Query: 246 aacaagtggggcccgcagcaccagacggtctctggcgaccattcggccatcaccatctgg 305 |||||||||||||||||||||||||| |||| | |||||| || || ||||||||||| Sbjct: 154 aacaagtggggcccgcagcaccagaccctctccgccgaccagtcctccctcaccatctgg 213 Query: 306 ctcgacaggacctgcgggagtgggttcaagtcgaagcatgcgtacaggaacggctacttc 365 ||||||| ||||||||||| ||||||||||| | | | |||||||||| ||||||||| Sbjct: 214 ctcgacaaaacctgcgggagcgggttcaagtcaaggaagtcgtacaggaatggctacttc 273 Query: 366 gcc 368 ||| Sbjct: 274 gcc 276 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 176 cgcgcagccttctcccggctactacccgagctcg 209 |||||||||||| || || ||||||||||||||| Sbjct: 84 cgcgcagccttcgccggggtactacccgagctcg 117
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 246 aacaagtggggcccgcagcaccagacggtctctggcgaccattcggccatcaccatctgg 305 |||||||||||||||||||||||||| |||| | |||||| || || ||||||||||| Sbjct: 17437461 aacaagtggggcccgcagcaccagaccctctccgccgaccagtcctccctcaccatctgg 17437520 Query: 306 ctcgacaggacctgcgg 322 ||||||| |||||||| Sbjct: 17437521 ctcgacaaaacctgcgg 17437537 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 176 cgcgcagccttctcccggctactacccgagctcg 209 |||||||||||| || || ||||||||||||||| Sbjct: 17437391 cgcgcagccttcgccggggtactacccgagctcg 17437424 Score = 40.1 bits (20), Expect = 5.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 321 gggagtgggttcaagtcgaagcatgcgtacaggaacggctacttcgcc 368 ||||| ||||||||||| | | | |||||||||| |||||||||||| Sbjct: 17438048 gggagcgggttcaagtcaaggaagtcgtacaggaatggctacttcgcc 17438095
>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0434A03 Length = 146505 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 246 aacaagtggggcccgcagcaccagacggtctctggcgaccattcggccatcaccatctgg 305 |||||||||||||||||||||||||| |||| | |||||| || || ||||||||||| Sbjct: 105685 aacaagtggggcccgcagcaccagaccctctccgccgaccagtcctccctcaccatctgg 105744 Query: 306 ctcgacaggacctgcgg 322 ||||||| |||||||| Sbjct: 105745 ctcgacaaaacctgcgg 105761 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 176 cgcgcagccttctcccggctactacccgagctcg 209 |||||||||||| || || ||||||||||||||| Sbjct: 105615 cgcgcagccttcgccggggtactacccgagctcg 105648 Score = 40.1 bits (20), Expect = 5.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 321 gggagtgggttcaagtcgaagcatgcgtacaggaacggctacttcgcc 368 ||||| ||||||||||| | | | |||||||||| |||||||||||| Sbjct: 106272 gggagcgggttcaagtcaaggaagtcgtacaggaatggctacttcgcc 106319
>ref|XM_750315.1| Aspergillus fumigatus Af293 RNA helicase Dbp (Afu2g10750) partial mRNA Length = 1698 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 113 cagcctctccttgctcccggccatgg 138 ||||||||||||||||||||| |||| Sbjct: 556 cagcctctccttgctcccggcgatgg 581
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 127 tcccggccatggcgctgctgctcctg 152 ||||||||| |||||||||||||||| Sbjct: 2152947 tcccggccacggcgctgctgctcctg 2152922
>ref|NM_022511.2| Rattus norvegicus profilin 1 (Pfn1), mRNA Length = 862 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 126 cccggccatggcgctgctgct 106
>ref|XM_848667.1| PREDICTED: Canis familiaris similar to Urocortin precursor (LOC611041), mRNA Length = 381 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 atggcgctgctgctcctggca 155 ||||||||||||||||||||| Sbjct: 31 atggcgctgctgctcctggca 51
>emb|Z98751.1|HS560B9 Human DNA sequence from clone RP4-560B9 on chromosome 1q24-25 Contains three processed pseudogenes and the VAMP4 gene for vesicle-associated membrane protein 4, complete sequence Length = 99074 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 2157 cccggccatggcgctgctgct 2177
>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete sequence Length = 194230 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 177425 cccggccatggcgctgctgct 177445
>emb|AL596117.19| Mouse DNA sequence from clone RP23-326P7 on chromosome 11 Contains the Gp1ba gene for glycoprotein 1b alpha polypeptide, the Slc25a11 gene for solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier) member 11, the gene for a novel PA domain and C3HC4 type zinc finger (RING finger) containing protein, the Pfn1 gene for profilin 1, five novel genes, the Eno3 gene for muscle enolase 3 beta, the Spag7 gene for sperm associated antigen 7, the Kif1c gene for kinesin family member 1C, a ribosomal protein 37A (Rpl37a) pseudogene, the gene for a novel zinc finger protein and six CpG islands, complete sequence Length = 207086 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 21836 cccggccatggcgctgctgct 21856
>dbj|AK131636.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500038L17 product:unclassifiable, full insert sequence Length = 829 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 374 cccggccatggcgctgctgct 394
>dbj|AK150780.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015F09 product:profilin 1, full insert sequence Length = 820 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 136 cccggccatggcgctgctgct 116
>dbj|AK152491.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830076F02 product:profilin 1, full insert sequence Length = 851 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 165 cccggccatggcgctgctgct 145
>dbj|AK160191.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410026M17 product:profilin 1, full insert sequence Length = 852 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 165 cccggccatggcgctgctgct 145
>dbj|AK034932.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430063L06 product:profilin 1, full insert sequence Length = 1999 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 138 cccggccatggcgctgctgct 118
>dbj|AK028117.1| Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010010C10 product:profilin 1, full insert sequence Length = 807 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 130 cccggccatggcgctgctgct 110
>dbj|AK011066.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510040G14 product:profilin 1, full insert sequence Length = 854 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 164 cccggccatggcgctgctgct 144
>gb|AC093766.3| Homo sapiens BAC clone RP11-98O2 from 4, complete sequence Length = 168569 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 gaccattcggccatcaccatc 302 ||||||||||||||||||||| Sbjct: 150067 gaccattcggccatcaccatc 150087
>dbj|BS000130.1| Pan troglodytes chromosome 22 clone:CH251-010A09, map 22, complete sequences Length = 201997 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gctgctgctcctggcaatggc 160 ||||||||||||||||||||| Sbjct: 65487 gctgctgctcctggcaatggc 65507
>gb|BC002080.1| Mus musculus profilin 1, mRNA (cDNA clone MGC:6236 IMAGE:3490976), complete cds Length = 885 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 152 cccggccatggcgctgctgct 132
>gb|BC062405.1| Rattus norvegicus profilin 1, mRNA (cDNA clone MGC:72445 IMAGE:5623232), complete cds Length = 862 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 126 cccggccatggcgctgctgct 106
>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105 Length = 219256 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gctgctgctcctggcaatggc 160 ||||||||||||||||||||| Sbjct: 65275 gctgctgctcctggcaatggc 65295
>ref|NM_011072.2| Mus musculus profilin 1 (Pfn1), mRNA Length = 854 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 cccggccatggcgctgctgct 148 ||||||||||||||||||||| Sbjct: 164 cccggccatggcgctgctgct 144
>dbj|AP001615.1| Homo sapiens genomic DNA, chromosome 21, clone:KB657H6, MX1-D21S171 region, complete sequence Length = 124516 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gctgctgctcctggcaatggc 160 ||||||||||||||||||||| Sbjct: 5392 gctgctgctcctggcaatggc 5412
>dbj|AP001614.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2042A8, MX1-D21S171 region, complete sequence Length = 81896 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 gctgctgctcctggcaatggc 160 ||||||||||||||||||||| Sbjct: 49616 gctgctgctcctggcaatggc 49636
>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence Length = 184327 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tccttgctcccggccatggc 139 |||||||||||||||||||| Sbjct: 160980 tccttgctcccggccatggc 160999
>ref|NM_021114.1| Homo sapiens serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) (SPINK2), mRNA Length = 594 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 91 tggcgctgctgctcctggca 110
>gb|BC022514.1| Homo sapiens serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor), mRNA (cDNA clone MGC:26562 IMAGE:4812189), complete cds Length = 631 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 92 tggcgctgctgctcctggca 111
>ref|XM_383918.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03742.1) partial mRNA Length = 2415 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atggcgctgctgctcctggc 154 |||||||||||||||||||| Sbjct: 617 atggcgctgctgctcctggc 636
>gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, complete sequence Length = 198636 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tccttgctcccggccatggc 139 |||||||||||||||||||| Sbjct: 187906 tccttgctcccggccatggc 187887
>emb|X68331.1|MFACTRYIN M.fascicularis mRNA for acrosin-trypsin inhibitor Length = 535 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 26 tggcgctgctgctcctggca 45
>emb|X57655.1|HSHUSIII H.sapiens RNA for acrosin-trypsin inhibitor (HUSI-II) Length = 594 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 91 tggcgctgctgctcctggca 110
>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5 Length = 316900 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cgtacaggaacggctacttc 365 |||||||||||||||||||| Sbjct: 180332 cgtacaggaacggctacttc 180351
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggcaatggcggt 163 ||||||||||||||||||| ||| |||| Sbjct: 790343 tggcgctgctgctcctggccatgtcggt 790370
>gb|AC022483.7| Homo sapiens BAC clone RP11-533F5 from 4, complete sequence Length = 205640 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 139137 tggcgctgctgctcctggca 139118
>emb|CR542135.1| Homo sapiens full open reading frame cDNA clone RZPDo834H0125D for gene SPINK2, serine protease inhibitor, Kazal type, 2 (acrosin-trypsin inhibitor); complete cds, without stopcodon Length = 252 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 23 tggcgctgctgctcctggca 42
>gb|AC154373.2| Mus musculus BAC clone RP23-79I18 from chromosome 9, complete sequence Length = 225286 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gctgctgctcctggcaatgg 159 |||||||||||||||||||| Sbjct: 60951 gctgctgctcctggcaatgg 60970
>emb|CT030635.8| Mouse DNA sequence from clone RP23-94N7 on chromosome 9, complete sequence Length = 228508 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gctgctgctcctggcaatgg 159 |||||||||||||||||||| Sbjct: 64136 gctgctgctcctggcaatgg 64117
>gb|M91438.1|HUMHUSII Human kazal-type serine proteinase (HUSI-II) gene, complete cds Length = 597 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 88 tggcgctgctgctcctggca 107
>gb|M84967.1|HUMHUSIIIA Human acrosin-trypsin inhibitor (HUSI-II) gene Length = 1780 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 tggcgctgctgctcctggca 155 |||||||||||||||||||| Sbjct: 1147 tggcgctgctgctcctggca 1166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,686,957 Number of Sequences: 3902068 Number of extensions: 2686957 Number of successful extensions: 39429 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39283 Number of HSP's gapped (non-prelim): 145 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)