ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast17e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016427.1| Zea mays clone Contig260 mRNA sequence Length = 1469 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||| Sbjct: 172 acaccagggcggccttcgcgcggatctacaagacgctcaaggaggagctgctcaccgacc 231 Query: 333 ccgccttcgactacaccgagtcgtcgcaccagtggatcgaccgcatg 379 | |||||||| | ||||||| ||| | ||||||||||||||||||| Sbjct: 232 cggccttcgagttcaccgaggagtcacgccagtggatcgaccgcatg 278
>gb|AF330037.1| Zea mays truncated geranylgeranyl-diphosphate synthase mRNA, partial cds Length = 1250 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||| Sbjct: 5 acaccagggcggccttcgcgcggatctacaagacgctcaaggaggagctgctcaccgacc 64 Query: 333 ccgccttcgactacaccgagtcgtcgcaccagtggatcgaccgcatg 379 | |||||||| | ||||||| ||| | ||||||||||||||||||| Sbjct: 65 cggccttcgagttcaccgaggagtcacgccagtggatcgaccgcatg 111
>gb|AF330036.1| Zea mays geranylgeranyl-diphosphate synthase mRNA, complete cds Length = 1399 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||| Sbjct: 154 acaccagggcggccttcgcgcggatctacaagacgctcaaggaggagctgctcaccgacc 213 Query: 333 ccgccttcgactacaccgagtcgtcgcaccagtggatcgaccgcatg 379 | |||||||| | ||||||| ||| | ||||||||||||||||||| Sbjct: 214 cggccttcgagttcaccgaggagtcacgccagtggatcgaccgcatg 260
>gb|AY108110.1| Zea mays PCO074380 mRNA sequence Length = 1453 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||| Sbjct: 154 acaccagggcggccttcgcgcggatctacaagacgctcaaggaggagctgctcaccgacc 213 Query: 333 ccgccttcgactacaccgagtcgtcgcaccagtggatcgaccgcatg 379 | |||||||| | ||||||| ||| | ||||||||||||||||||| Sbjct: 214 cggccttcgagttcaccgaggagtcacgccagtggatcgaccgcatg 260
>gb|L39789.1|MZEFPS Zea mays farnesyl pyrophosphate synthetase (fps) mRNA, complete cds Length = 1378 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||| Sbjct: 128 acaccagggcggccttcgcgcggatctacaagacgctcaaggaggagctgctcaccgacc 187 Query: 333 ccgccttcgactacaccgagtcgtcgcaccagtggatcgaccgcatg 379 | |||||||| | ||||||| ||| | ||||||||||||||||||| Sbjct: 188 cggccttcgagttcaccgaggagtcacgccagtggatcgaccgcatg 234
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||| | Sbjct: 115317 acactaaggcggcgttcgtgcggagctacgacgtgctcaaggaggagctgctcagggatc 115376 Query: 333 ccgccttcgactacaccgagt 353 ||||| ||| |||||||||| Sbjct: 115377 acgcctccgagtacaccgagt 115397 Score = 97.6 bits (49), Expect = 3e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 273 acaccaaggcggcgttcgcgcggatctacgacgcgctcaaggaggagctgctcagggacc 332 |||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||||| | Sbjct: 75604 acactaaggcggcgttcgtgcggagctacgacgtgctcaaggaggagctgctcagggatc 75663 Query: 333 ccgccttcgactacaccgagt 353 ||||| ||| |||||||||| Sbjct: 75664 acgcctccgagtacaccgagt 75684
>dbj|AK100273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072A14, full insert sequence Length = 1452 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| Sbjct: 286 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 345 Query: 367 gatcgaccgcatg 379 |||||| |||||| Sbjct: 346 gatcgatcgcatg 358
>dbj|AK073822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I20, full insert sequence Length = 1452 Score = 97.6 bits (49), Expect = 3e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| Sbjct: 358 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 417 Query: 367 gatcgaccgcatg 379 |||||| |||||| Sbjct: 418 gatcgatcgcatg 430
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| Sbjct: 44685 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 44626 Query: 367 gatcga 372 |||||| Sbjct: 44625 gatcga 44620
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| Sbjct: 986 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 927 Query: 367 gatcga 372 |||||| Sbjct: 926 gatcga 921
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Minus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| Sbjct: 26762746 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 26762687 Query: 367 gatcga 372 |||||| Sbjct: 26762686 gatcga 26762681
>gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-like protein, putative myb-related protein, putative farnesyl pyrophosphate synthase, and hypothetical protein genes, complete cds Length = 43422 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 |||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||| Sbjct: 31530 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 31589 Query: 367 gatcga 372 |||||| Sbjct: 31590 gatcga 31595
>ref|NM_192229.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| |||||| |||||||| | |||||| ||||| |||||| Sbjct: 75 gctcaaggaggagatgctcgaggacccggccttcgagttcaccgacgagtcgctccagtg 134 Query: 367 gatcgaccgcatgctgg 383 ||||||||||||||||| Sbjct: 135 gatcgaccgcatgctgg 151
>gb|BT009271.1| Triticum aestivum clone wlk8.pk0009.f9:fis, full insert mRNA sequence Length = 1301 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| ||||||||||||||| | |||||| ||||| |||||| Sbjct: 126 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtcgctccagtg 185 Query: 367 gatcgaccgcatgctgg 383 |||||| |||||||||| Sbjct: 186 gatcgagcgcatgctgg 202
>dbj|AK061657.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D06, full insert sequence Length = 1332 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| |||||| |||||||| | |||||| ||||| |||||| Sbjct: 159 gctcaaggaggagatgctcgaggacccggccttcgagttcaccgacgagtcgctccagtg 218 Query: 367 gatcgaccgcatgctgg 383 ||||||||||||||||| Sbjct: 219 gatcgaccgcatgctgg 235
>dbj|D85317.1| Oryza sativa (japonica cultivar-group) mRNA for farnesyl pyrophosphate synthase, complete cds Length = 1289 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| |||||| |||||||| | |||||| ||||| |||||| Sbjct: 116 gctcaaggaggagatgctcgaggacccggccttcgagttcaccgacgagtcgctccagtg 175 Query: 367 gatcgaccgcatgctgg 383 ||||||||||||||||| Sbjct: 176 gatcgaccgcatgctgg 192
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| |||||| |||||||| | |||||| ||||| |||||| Sbjct: 29151721 gctcaaggaggagatgctcgaggacccggccttcgagttcaccgacgagtcgctccagtg 29151780 Query: 367 gatcgaccgc 376 |||||||||| Sbjct: 29151781 gatcgaccgc 29151790
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| |||||| |||||||| | |||||| ||||| |||||| Sbjct: 112087 gctcaaggaggagatgctcgaggacccggccttcgagttcaccgacgagtcgctccagtg 112146 Query: 367 gatcgaccgc 376 |||||||||| Sbjct: 112147 gatcgaccgc 112156
>dbj|AB021747.1| Oryza sativa (japonica cultivar-group) FPPS1 gene for farnesyl diphosphate synthase, complete cds Length = 7423 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||||||||| ||||| |||||| |||||||| | |||||| ||||| |||||| Sbjct: 2024 gctcaaggaggagatgctcgaggacccggccttcgagttcaccgacgagtcgctccagtg 2083 Query: 367 gatcgaccgc 376 |||||||||| Sbjct: 2084 gatcgaccgc 2093
>gb|AY110411.1| Zea mays CL242_1 mRNA sequence Length = 2504 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 307 gctcaaggaggagctgctcagggaccccgccttcgactacaccgagtcgtcgcaccagtg 366 ||||||| ||||| ||||| ||||||||||||||| | ||| || ||||| |||||| Sbjct: 189 gctcaagcaggagatgctcgaggaccccgccttcgaattcactgacgagtcgctccagtg 248 Query: 367 gatcgaccgcatg 379 ||||||||||||| Sbjct: 249 gatcgaccgcatg 261
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Plus Query: 276 ccaaggcggcgttcgcgcggatc 298 ||||||||||||||||||||||| Sbjct: 3297174 ccaaggcggcgttcgcgcggatc 3297196
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 tcgcgcggatctacgacgcgct 309 |||||||||||||||||||||| Sbjct: 1178413 tcgcgcggatctacgacgcgct 1178392
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 288 tcgcgcggatctacgacgcgct 309 |||||||||||||||||||||| Sbjct: 2337152 tcgcgcggatctacgacgcgct 2337173
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 tcgcgcggatctacgacgcgct 309 |||||||||||||||||||||| Sbjct: 2047457 tcgcgcggatctacgacgcgct 2047436
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 tcgcgcggatctacgacgcgct 309 |||||||||||||||||||||| Sbjct: 2704407 tcgcgcggatctacgacgcgct 2704386
>gb|AC164105.4| Mus musculus BAC clone RP23-433B2 from chromosome 9, complete sequence Length = 215089 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ctctccatcccctgtttcccc 211 ||||||||||||||||||||| Sbjct: 28922 ctctccatcccctgtttcccc 28942
>ref|NM_184903.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2415 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 acgacgcgctcaaggaggagctgct 324 |||||| |||||||||||||||||| Sbjct: 2174 acgacgagctcaaggaggagctgct 2198
>ref|NM_186849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1317 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gcgccgagctcgacgccatcg 24 ||||||||||||||||||||| Sbjct: 230 gcgccgagctcgacgccatcg 250
>ref|XM_604169.2| PREDICTED: Bos taurus similar to malic enzyme 3, NADP(+)-dependent, mitochondrial (LOC525813), mRNA Length = 1695 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 gaggagctgctcagggacccc 334 ||||||||||||||||||||| Sbjct: 517 gaggagctgctcagggacccc 537
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 acgacgcgctcaaggaggagctgct 324 |||||| |||||||||||||||||| Sbjct: 31847266 acgacgagctcaaggaggagctgct 31847242
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gcgccgagctcgacgccatcg 24 ||||||||||||||||||||| Sbjct: 8369775 gcgccgagctcgacgccatcg 8369755
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 acgacgcgctcaaggaggagctgct 324 |||||| |||||||||||||||||| Sbjct: 31937782 acgacgagctcaaggaggagctgct 31937758
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gcgccgagctcgacgccatcg 24 ||||||||||||||||||||| Sbjct: 74873 gcgccgagctcgacgccatcg 74853
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gcgccgagctcgacgccatcg 24 ||||||||||||||||||||| Sbjct: 1368 gcgccgagctcgacgccatcg 1348
>dbj|AK107354.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-H10, full insert sequence Length = 2561 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 acgacgcgctcaaggaggagctgct 324 |||||| |||||||||||||||||| Sbjct: 2194 acgacgagctcaaggaggagctgct 2218
>emb|AJ970535.1| Triticum turgidum subsp. durum partial mRNA for heat shock protein 101 (hsp101c-A gene) Length = 1881 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 289 cgcgcggatctacgacgcgctcaaggagg 317 ||||| ||||| ||||||||||||||||| Sbjct: 346 cgcgcagatctccgacgcgctcaaggagg 374
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 acgacgcgctcaaggaggagctgct 324 |||||| |||||||||||||||||| Sbjct: 48519 acgacgagctcaaggaggagctgct 48495
>gb|BC094564.1| Mus musculus mitogen-activated protein kinase 4, mRNA (cDNA clone IMAGE:6839524) Length = 4862 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 1920 caaggaggagctgctcaggg 1939
>gb|AC126042.3| Mus musculus BAC clone RP24-303J10 from chromosome 18, complete sequence Length = 173064 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 18723 caaggaggagctgctcaggg 18704
>gb|AC124367.4| Mus musculus BAC clone RP24-545D20 from chromosome 18, complete sequence Length = 169912 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 45459 caaggaggagctgctcaggg 45478
>gb|AY281353.1| Uncultured Acidobacteria bacterium clone 32d1 genomic sequence Length = 35153 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cgagctcgacgccatcgcga 27 |||||||||||||||||||| Sbjct: 16080 cgagctcgacgccatcgcga 16061
>gb|BC062911.1| Mus musculus mitogen-activated protein kinase 4, mRNA (cDNA clone MGC:73474 IMAGE:6821544), complete cds Length = 4064 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 1109 caaggaggagctgctcaggg 1128
>gb|BC058942.1| Mus musculus mitogen-activated protein kinase 4, mRNA (cDNA clone MGC:66565 IMAGE:6821544), complete cds Length = 4064 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 1109 caaggaggagctgctcaggg 1128
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 acgacgcgctcaaggaggagctgc 323 ||||||||||||||| |||||||| Sbjct: 240021 acgacgcgctcaaggcggagctgc 239998
>emb|Z21935.1|RNPROKINA R.norvegicus protein kinase rMNK2 Length = 822 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 678 caaggaggagctgctcaggg 697
>gb|BC091275.1| Rattus norvegicus keratin complex 1, acidic, gene 18, mRNA (cDNA clone MGC:109143 IMAGE:7383311), complete cds Length = 1397 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gcgctcaaggaggagctgct 324 |||||||||||||||||||| Sbjct: 632 gcgctcaaggaggagctgct 651
>ref|NM_053976.1| Rattus norvegicus keratin complex 1, acidic, gene 18 (Krt1-18), mRNA Length = 1397 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gcgctcaaggaggagctgct 324 |||||||||||||||||||| Sbjct: 632 gcgctcaaggaggagctgct 651
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gctcgacgccatcgcgatct 30 |||||||||||||||||||| Sbjct: 3661016 gctcgacgccatcgcgatct 3660997
>ref|NM_172632.2| Mus musculus mitogen-activated protein kinase 4 (Mapk4), mRNA Length = 4660 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 1706 caaggaggagctgctcaggg 1725
>dbj|AK079654.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330097D03 product:MITOGEN-ACTIVATED PROTEIN KINASE 4 (EC 2.7.1.-) (EXTRACELLULAR SIGNAL- REGULATED KINASE 4) (ERK-4) (MAP KINASE ISOFORM P63) (P63-MAPK) homolog [Homo sapiens], full insert sequence Length = 4589 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 1684 caaggaggagctgctcaggg 1703
>ref|XM_225726.3| PREDICTED: Rattus norvegicus mitogen-activated protein kinase 4 (Mapk4), mRNA Length = 2907 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaggaggagctgctcaggg 329 |||||||||||||||||||| Sbjct: 1911 caaggaggagctgctcaggg 1930
>gb|AF140062.1|AF140062 Phanerochaete chrysosporium lignin peroxidase (lipJ) gene, complete sequence Length = 1591 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgacgccatcgcgatctctc 33 |||||||||||||||||||| Sbjct: 329 cgacgccatcgcgatctctc 348
>emb|X81448.1|RNKER18 R.norvegicus mRNA for keratin 18 Length = 443 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gcgctcaaggaggagctgct 324 |||||||||||||||||||| Sbjct: 224 gcgctcaaggaggagctgct 243
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 acgacgcgctcaaggaggagctgc 323 |||||||||||||||||| ||||| Sbjct: 1006529 acgacgcgctcaaggaggtgctgc 1006552 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,290,083 Number of Sequences: 3902068 Number of extensions: 1290083 Number of successful extensions: 26196 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25566 Number of HSP's gapped (non-prelim): 629 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
