ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast17c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
2dbj|AK099589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
3dbj|AK060023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
5dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
6dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
7dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
8ref|XM_473058.1| Oryza sativa (japonica cultivar-group), predic... 46 0.097
9emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.097
10gb|BT009450.1| Triticum aestivum clone wlmk8.pk0021.e3:fis, full... 46 0.097
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.097
12dbj|AK119237.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.097
13dbj|AK104637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.097
14dbj|AK072528.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.097
15emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.097
16gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 44 0.38
17dbj|AB218791.1| Prunus mume Pm94 mRNA for Alcohol acyl-transfera... 44 0.38
18ref|XM_466682.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
19ref|XM_506864.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.5
20ref|NM_196396.1| Oryza sativa (japonica cultivar-group) putative... 42 1.5
21gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.5
22ref|XM_364338.1| Magnaporthe grisea 70-15 predicted protein (MG0... 42 1.5
23gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.5
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27dbj|AK104319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
28gb|CP000004.1| Gluconobacter oxydans 621H plasmid pGOX1, complet... 42 1.5
29gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.5
30gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
31ref|XM_483028.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
32ref|XM_474406.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
33ref|XM_581887.2| PREDICTED: Bos taurus similar to poliovirus rec... 40 6.0
34gb|AC023175.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.0
35gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 6.0
36gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.0
37gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence 40 6.0
38dbj|AK093870.1| Homo sapiens cDNA FLJ36551 fis, clone TRACH2008127 40 6.0
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
40dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
41gb|AC127521.11| Homo sapiens chromosome 17, clone RP13-580F15, c... 40 6.0
42dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
44dbj|AK119512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
45dbj|AK105693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
46gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.0
47emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.0
48dbj|AB086148.1| Bos taurus prr2 gene for poliovirus receptor rel... 40 6.0
49emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 40 6.0 
>dbj|AK104889.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C12, full
           insert sequence
          Length = 1440

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 163/203 (80%)
 Strand = Plus / Plus

                                                                       
Query: 176 ctcgccgtacaggtcaccttcttgaggtgcggcggcgtggtcttggggacggccacgcac 235
           |||||||||||||| ||||||||||| || |||||  | || || |||||||| | ||||
Sbjct: 401 ctcgccgtacaggtgaccttcttgagatggggcggtatagtgttagggacggcgatgcac 460

                                                                       
Query: 236 cacgccgcggcggacggccccagcacgttccacttcatccggacgtgggcgggatactgc 295
           || ||||| |  |||||||  |||| |||||||||| | |  || ||||| |  | ||||
Sbjct: 461 catgccgccgtcgacggccatagcatgttccacttcttgcaaacatgggctgctttctgc 520

                                                                       
Query: 296 agggacggcgagggcgcggcggtagagctgccgtgccacgaacgcggcctcctccgtgcg 355
            |||||||||| | ||| | ||| |||||||| |||||||| |||| ||||||||| |||
Sbjct: 521 cgggacggcgacgccgccgtggtggagctgccctgccacgaccgcgccctcctccgcgcg 580

                                  
Query: 356 cgctccccgcccgtcatccaccc 378
           ||| ||| || || |||||||||
Sbjct: 581 cgcccccggctcgccatccaccc 603
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>dbj|AK099589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043H09, full
           insert sequence
          Length = 1493

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 163/203 (80%)
 Strand = Plus / Plus

                                                                       
Query: 176 ctcgccgtacaggtcaccttcttgaggtgcggcggcgtggtcttggggacggccacgcac 235
           |||||||||||||| ||||||||||| || |||||  | || || |||||||| | ||||
Sbjct: 428 ctcgccgtacaggtgaccttcttgagatggggcggtatagtgttagggacggcgatgcac 487

                                                                       
Query: 236 cacgccgcggcggacggccccagcacgttccacttcatccggacgtgggcgggatactgc 295
           || ||||| |  |||||||  |||| |||||||||| | |  || ||||| |  | ||||
Sbjct: 488 catgccgccgtcgacggccatagcatgttccacttcttgcaaacatgggctgctttctgc 547

                                                                       
Query: 296 agggacggcgagggcgcggcggtagagctgccgtgccacgaacgcggcctcctccgtgcg 355
            |||||||||| | ||| | ||| |||||||| |||||||| |||| ||||||||| |||
Sbjct: 548 cgggacggcgacgccgccgtggtggagctgccctgccacgaccgcgccctcctccgcgcg 607

                                  
Query: 356 cgctccccgcccgtcatccaccc 378
           ||| ||| || || |||||||||
Sbjct: 608 cgcccccggctcgccatccaccc 630
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>dbj|AK060023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H06, full
           insert sequence
          Length = 1442

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 162/203 (79%)
 Strand = Plus / Plus

                                                                       
Query: 176 ctcgccgtacaggtcaccttcttgaggtgcggcggcgtggtcttggggacggccacgcac 235
           |||||||||||||| || |||||||| || |||||  | || || |||||||| | ||||
Sbjct: 424 ctcgccgtacaggtgactttcttgagatggggcggtatagtgttagggacggcgatgcac 483

                                                                       
Query: 236 cacgccgcggcggacggccccagcacgttccacttcatccggacgtgggcgggatactgc 295
           || ||||| |  |||||||  |||| |||||||||| | |  || ||||| |  | ||||
Sbjct: 484 catgccgccgtcgacggccatagcatgttccacttcttgcaaacatgggctgctttctgc 543

                                                                       
Query: 296 agggacggcgagggcgcggcggtagagctgccgtgccacgaacgcggcctcctccgtgcg 355
            |||||||||| | ||| | ||| |||||||| |||||||| |||| ||||||||| |||
Sbjct: 544 cgggacggcgacgccgccgtggtggagctgccctgccacgaccgcgccctcctccgcgcg 603

                                  
Query: 356 cgctccccgcccgtcatccaccc 378
           ||| ||| || || |||||||||
Sbjct: 604 cgcccccggctcgccatccaccc 626
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 29       ggccggttcgagatcgactgcaacggggagggcgccctcttcgtcgt 75
                |||||| ||||||||||||||||||| ||||| || || ||||||||
Sbjct: 15201328 ggccggctcgagatcgactgcaacggcgagggggcgctgttcgtcgt 15201282



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 261      cgttccacttcatccggacgtgggcggg 288
                ||||||| ||||||||||||||| ||||
Sbjct: 15198475 cgttccagttcatccggacgtggacggg 15198448
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>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1740_D06
          Length = 187410

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 29    ggccggttcgagatcgactgcaacggggagggcgccctcttcgtcgt 75
             |||||| ||||||||||||||||||| ||||| || || ||||||||
Sbjct: 95304 ggccggctcgagatcgactgcaacggcgagggggcgctgttcgtcgt 95258



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 261   cgttccacttcatccggacgtgggcggg 288
             ||||||| ||||||||||||||| ||||
Sbjct: 92451 cgttccagttcatccggacgtggacggg 92424
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>dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full
           insert sequence
          Length = 1707

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 29  ggccggttcgagatcgactgcaacggggagggcgccctcttcgtcgt 75
           |||||| ||||||||||||||||||| ||||| || || ||||||||
Sbjct: 348 ggccggctcgagatcgactgcaacggcgagggggcgctgttcgtcgt 394



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 261 cgttccacttcatccggacgtgggcggg 288
           ||||||| ||||||||||||||| ||||
Sbjct: 592 cgttccagttcatccggacgtggacggg 619
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>dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D08, full
           insert sequence
          Length = 1706

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 29  ggccggttcgagatcgactgcaacggggagggcgccctcttcgtcgt 75
           |||||| ||||||||||||||||||| ||||| || || ||||||||
Sbjct: 347 ggccggctcgagatcgactgcaacggcgagggggcgctgttcgtcgt 393



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 261 cgttccacttcatccggacgtgggcggg 288
           ||||||| ||||||||||||||| ||||
Sbjct: 591 cgttccagttcatccggacgtggacggg 618
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>ref|XM_473058.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1329

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 36  tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
           |||||||||||||||||||||| || |  ||||||||||
Sbjct: 260 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 298
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 36    tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
             |||||||||||||||||||||| || |  ||||||||||
Sbjct: 90322 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 90360
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>gb|BT009450.1| Triticum aestivum clone wlmk8.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 1587

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 39  agatcgactgcaacggggagggcgccctcttcgtc 73
           |||||||||||||||| ||||| || |||||||||
Sbjct: 318 agatcgactgcaacggcgagggagcgctcttcgtc 352
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 36       tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
                |||||||||||||||||||||| || |  ||||||||||
Sbjct: 24969737 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 24969775



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 297      gggacggcgagggcgcggcg 316
                ||||||||||||||||||||
Sbjct: 34945448 gggacggcgagggcgcggcg 34945467
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>dbj|AK119237.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D12, full
           insert sequence
          Length = 1827

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 36  tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
           |||||||||||||||||||||| || |  ||||||||||
Sbjct: 474 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 512
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>dbj|AK104637.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D12, full
           insert sequence
          Length = 1851

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 36  tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
           |||||||||||||||||||||| || |  ||||||||||
Sbjct: 380 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 418
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>dbj|AK072528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131B01, full
           insert sequence
          Length = 1881

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 36  tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
           |||||||||||||||||||||| || |  ||||||||||
Sbjct: 381 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 419
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 36    tcgagatcgactgcaacggggagggcgccctcttcgtcg 74
             |||||||||||||||||||||| || |  ||||||||||
Sbjct: 97772 tcgagatcgactgcaacggggaaggggtgctcttcgtcg 97810
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 362    ccgcccgtcatccaccccgaca 383
              ||||||||||||||||||||||
Sbjct: 619221 ccgcccgtcatccaccccgaca 619242
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>dbj|AB218791.1| Prunus mume Pm94 mRNA for Alcohol acyl-transferase, complete cds
          Length = 1695

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 36  tcgagatcgactgcaacgggga 57
           ||||||||||||||||||||||
Sbjct: 421 tcgagatcgactgcaacgggga 442
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>ref|XM_466682.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1671

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 38  gagatcgactgcaacggggagggcg 62
           |||||||||||||||||||| ||||
Sbjct: 369 gagatcgactgcaacggggaaggcg 393
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>ref|XM_506864.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.15
           mRNA
          Length = 1716

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 38  gagatcgactgcaacggggagggcg 62
           |||||||||||||||||||| ||||
Sbjct: 369 gagatcgactgcaacggggaaggcg 393
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>ref|NM_196396.1| Oryza sativa (japonica cultivar-group) putative anthocyanin
           5-aromatic acyltransferase (OSJNBa0044A10.13), mRNA
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 226 ggccacgcaccacgccgcggcggacggcc 254
           ||||| ||||||||| |||||||||||||
Sbjct: 489 ggccatgcaccacgcggcggcggacggcc 517
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 50      aacggggagggcgccctcttcgtcg 74
               ||||||||| |||||||||||||||
Sbjct: 1291945 aacggggagagcgccctcttcgtcg 1291969
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>ref|XM_364338.1| Magnaporthe grisea 70-15 predicted protein (MG09183.4) partial mRNA
          Length = 438

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 269 ttcatccggacgtgggcggga 289
           |||||||||||||||||||||
Sbjct: 293 ttcatccggacgtgggcggga 273
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>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0044A10, from chromosome 10, complete sequence
          Length = 169270

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 226   ggccacgcaccacgccgcggcggacggcc 254
             ||||| ||||||||| |||||||||||||
Sbjct: 53929 ggccatgcaccacgcggcggcggacggcc 53901
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 226      ggccacgcaccacgccgcggcggacggcc 254
                ||||| ||||||||| |||||||||||||
Sbjct: 13098410 ggccatgcaccacgcggcggcggacggcc 13098382
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 38       gagatcgactgcaacggggagggcg 62
                |||||||||||||||||||| ||||
Sbjct: 24100590 gagatcgactgcaacggggaaggcg 24100614
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A05
          Length = 174290

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 38    gagatcgactgcaacggggagggcg 62
             |||||||||||||||||||| ||||
Sbjct: 59331 gagatcgactgcaacggggaaggcg 59355
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>dbj|AK104319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E04, full
           insert sequence
          Length = 1671

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 38  gagatcgactgcaacggggagggcg 62
           |||||||||||||||||||| ||||
Sbjct: 369 gagatcgactgcaacggggaaggcg 393
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>gb|CP000004.1| Gluconobacter oxydans 621H plasmid pGOX1, complete sequence
          Length = 163186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 320    gagctgccgtgccacgaacgc 340
              |||||||||||||||||||||
Sbjct: 145508 gagctgccgtgccacgaacgc 145528
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 364     gcccgtcatccaccccgacaccatc 388
               |||||||| ||||||||||||||||
Sbjct: 2844045 gcccgtcaaccaccccgacaccatc 2844069



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 55      ggagggcgccctcttcgtcgt 75
               |||||||||||||||||||||
Sbjct: 2129078 ggagggcgccctcttcgtcgt 2129098
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 226      ggccacgcaccacgccgcggcggacggcc 254
                ||||| ||||||||| |||||||||||||
Sbjct: 13105750 ggccatgcaccacgcggcggcggacggcc 13105722
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>ref|XM_483028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 192 ccttcttgaggtgcggcggcgtgg 215
           ||||||||||| ||||||||||||
Sbjct: 916 ccttcttgaggggcggcggcgtgg 893
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>ref|XM_474406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1557

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gggacggcgagggcgcggcg 316
           ||||||||||||||||||||
Sbjct: 77  gggacggcgagggcgcggcg 58
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>ref|XM_581887.2| PREDICTED: Bos taurus similar to poliovirus receptor-related 2
           (herpesvirus entry mediator B) (prr2), mRNA
          Length = 2620

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 cggtagagctgccgtgccac 334
           ||||||||||||||||||||
Sbjct: 322 cggtagagctgccgtgccac 341
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>gb|AC023175.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-69B14, complete
              sequence
          Length = 195667

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 396    tctgcagcaggctaccccagcacg 419
              |||||||||||| |||||||||||
Sbjct: 146825 tctgcagcaggcaaccccagcacg 146802
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 90      gcaccttcgacgacttcagcgacc 113
               ||||||||||||||||| ||||||
Sbjct: 1664746 gcaccttcgacgacttccgcgacc 1664723
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 413     cagcacgatccgtccggcgc 432
               ||||||||||||||||||||
Sbjct: 1809763 cagcacgatccgtccggcgc 1809744
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>gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence
          Length = 185378

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    ggaggctgttctgtcctccc 154
              ||||||||||||||||||||
Sbjct: 179957 ggaggctgttctgtcctccc 179976
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>dbj|AK093870.1| Homo sapiens cDNA FLJ36551 fis, clone TRACH2008127
          Length = 2025

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  ggaggctgttctgtcctccc 154
            ||||||||||||||||||||
Sbjct: 1722 ggaggctgttctgtcctccc 1741
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 192      ccttcttgaggtgcggcggcgtgg 215
                ||||||||||| ||||||||||||
Sbjct: 23945441 ccttcttgaggggcggcggcgtgg 23945418
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 305      gagggcgcggcggtagagctgccg 328
                ||||||||||||||||||| ||||
Sbjct: 29765695 gagggcgcggcggtagagcagccg 29765718
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>gb|AC127521.11| Homo sapiens chromosome 17, clone RP13-580F15, complete sequence
          Length = 31450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ggaggctgttctgtcctccc 154
             ||||||||||||||||||||
Sbjct: 12931 ggaggctgttctgtcctccc 12950
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>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_F03
          Length = 110783

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 305   gagggcgcggcggtagagctgccg 328
             ||||||||||||||||||| ||||
Sbjct: 63825 gagggcgcggcggtagagcagccg 63848
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 192   ccttcttgaggtgcggcggcgtgg 215
             ||||||||||| ||||||||||||
Sbjct: 78592 ccttcttgaggggcggcggcgtgg 78569
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>dbj|AK119512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E01, full
           insert sequence
          Length = 1814

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gggacggcgagggcgcggcg 316
           ||||||||||||||||||||
Sbjct: 167 gggacggcgagggcgcggcg 148
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>dbj|AK105693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C07, full
           insert sequence
          Length = 2059

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 gggacggcgagggcgcggcg 316
           ||||||||||||||||||||
Sbjct: 412 gggacggcgagggcgcggcg 393
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    caagccgacgccggagacac 134
              ||||||||||||||||||||
Sbjct: 394184 caagccgacgccggagacac 394203
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gggacggcgagggcgcggcg 316
             ||||||||||||||||||||
Sbjct: 50855 gggacggcgagggcgcggcg 50874
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>dbj|AB086148.1| Bos taurus prr2 gene for poliovirus receptor related-gene 2,
           partial cds
          Length = 343

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 315 cggtagagctgccgtgccac 334
           ||||||||||||||||||||
Sbjct: 30  cggtagagctgccgtgccac 49
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
            complete sequence
          Length = 145391

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  gggacggcgagggcgcggcg 316
            ||||||||||||||||||||
Sbjct: 4500 gggacggcgagggcgcggcg 4519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,231,025
Number of Sequences: 3902068
Number of extensions: 2231025
Number of successful extensions: 43410
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42702
Number of HSP's gapped (non-prelim): 708
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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