ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast17c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL670009.1|NC123A4 Neurospora crassa DNA linkage group V cos... 40 1.5
2emb|Z82217.1|HS78B3 Human DNA sequence from clone RP1-78B3 on ch... 38 6.0
3emb|AL160036.12| Human DNA sequence from clone RP11-555C15 on ch... 38 6.0
4gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence 38 6.0
5gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, compl... 38 6.0
6gb|AC092272.2| Homo sapiens chromosome 5 clone CTC-339E17, compl... 38 6.0
7gb|AC008844.5|AC008844 Homo sapiens chromosome 5 clone CTD-2157L... 38 6.0
8gb|U44747.1|CAU44747 Candida albicans adhesion and aggregation m... 38 6.0
9gb|U18983.1|CAU18983 Candida albicans adherence factor gene, com... 38 6.0

>emb|AL670009.1|NC123A4 Neurospora crassa DNA linkage group V cosmid contig 123A4
          Length = 153794

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     aagcaaaaaagaacaacgaa 51
              ||||||||||||||||||||
Sbjct: 110697 aagcaaaaaagaacaacgaa 110716



to top

>emb|Z82217.1|HS78B3 Human DNA sequence from clone RP1-78B3 on chromosome 22, complete
             sequence
          Length = 73031

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 30    gaaagcaaaaaagaacaacgaaa 52
             |||||||||||||||||| ||||
Sbjct: 63911 gaaagcaaaaaagaacaaagaaa 63889



to top

>emb|AL160036.12| Human DNA sequence from clone RP11-555C15 on chromosome 13 Contains
            part of the GPC6 gene for glypican 6, complete sequence
          Length = 173526

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 30   gaaagcaaaaaagaacaacgaaa 52
            |||||||||||||||||| ||||
Sbjct: 1371 gaaagcaaaaaagaacaaagaaa 1349



to top

>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
          Length = 191684

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 30     gaaagcaaaaaagaacaacgaaa 52
              |||||||||||||||||| ||||
Sbjct: 176713 gaaagcaaaaaagaacaaagaaa 176735



to top

>gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, complete sequence
          Length = 177954

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    caaaaaagaacaacgaaat 53
             |||||||||||||||||||
Sbjct: 31410 caaaaaagaacaacgaaat 31428



to top

>gb|AC092272.2| Homo sapiens chromosome 5 clone CTC-339E17, complete sequence
          Length = 145668

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     caaaaaagaacaacgaaat 53
              |||||||||||||||||||
Sbjct: 138692 caaaaaagaacaacgaaat 138710



to top

>gb|AC008844.5|AC008844 Homo sapiens chromosome 5 clone CTD-2157L4, complete sequence
          Length = 113759

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    caaaaaagaacaacgaaat 53
             |||||||||||||||||||
Sbjct: 40314 caaaaaagaacaacgaaat 40332



to top

>gb|U44747.1|CAU44747 Candida albicans adhesion and aggregation mediating surface antigen
           (AAF1) gene, complete cds
          Length = 2913

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  ggccgaaagcaaaaaagaa 44
           |||||||||||||||||||
Sbjct: 388 ggccgaaagcaaaaaagaa 406



to top

>gb|U18983.1|CAU18983 Candida albicans adherence factor gene, complete cds
          Length = 3412

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  ggccgaaagcaaaaaagaa 44
           |||||||||||||||||||
Sbjct: 773 ggccgaaagcaaaaaagaa 791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 698,550
Number of Sequences: 3902068
Number of extensions: 698550
Number of successful extensions: 46810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46800
Number of HSP's gapped (non-prelim): 10
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top