>LSM4_ORYSA (Q9LGE6) Probable U6 snRNA-associated Sm-like protein LSm4|
          Length = 147

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 65  RRPQGTGAPSRARGRGEKATPGGGREAEKGRPDATKQRGG 184
           RRP G G   R RGRG+  T  GGR   +G+ D   + GG
Sbjct: 90  RRPPGVG---RGRGRGDIGTKPGGRGIGRGQDDGGSKGGG 126

>LRP1_HHV1F (P17588) Latency-related protein 1|
          Length = 340

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 74  QGTGAPSRARGRGEKATPGGGREAEKGRPDATKQRGG 184
           QGT  P+R  G G    PGGGR    G P  ++ RGG
Sbjct: 281 QGTDGPARGGGSGGGRGPGGGR----GGPRGSRGRGG 313

>RL1_RHIME (Q92QI0) 50S ribosomal protein L1|
          Length = 232

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
 Frame = +3

Query: 198 RGMRSFPVAGGRSVTLALF-------------SDVSNSRELLDLMQSGKLEPEAAFLNAS 338
           RG+ + P   GRSV +A+F             +DV  + EL++++Q GK++    F    
Sbjct: 60  RGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVEIVQGGKID----FDRCI 115

Query: 339 LVPDVFPV 362
             PD+ P+
Sbjct: 116 ATPDMMPL 123

>HNF3G_RAT (P32183) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3)
          Length = 354

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 PLCLVASGRPFSASLPPPGVAFSPLPLARLGAPVP 76
           PL    S  P S+  PP G+  SPLP   L  P P
Sbjct: 36  PLNSYMSLNPLSSPYPPGGLQASPLPTGPLAPPAP 70

>RL1_SILPO (Q5LMQ0) 50S ribosomal protein L1|
          Length = 232

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
 Frame = +3

Query: 198 RGMRSFPVAGGRSVTLALFS-------------DVSNSRELLDLMQSGKLEPEAAFLNAS 338
           RG+   P   G++V +A+F+             D+  + +L++ +QSGK+E    F    
Sbjct: 60  RGVVGLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLMETIQSGKIE----FDRCI 115

Query: 339 LVPDVFPV 362
             PD+ PV
Sbjct: 116 ATPDMMPV 123

>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 68  RPQGTGAPSRARGRGEKATPGGGREAEKGRPDATKQRGG 184
           R + T   SR+R RGE+   GGG + ++ R    ++ GG
Sbjct: 67  RDRDTRRRSRSRDRGERRGGGGGGDRDRSRSRERRRGGG 105

>RSPO1_MOUSE (Q9Z132) R-spondin-1 precursor (Roof plate-specific spondin-1)|
           (Cysteine-rich and single thrombospondin
           domain-containing protein 3) (Cristin-3) (mCristin-3)
          Length = 265

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 82  RSPEPRQRERGEGDAGRRKGGREGPARRHQAEGR 183
           R+P P  ++R +G  GRR+     PAR++  E R
Sbjct: 203 RTPCPEGQKRRKGGQGRRENANRHPARKNSKEPR 236

>RS3_ANASP (Q8YPI5) 30S ribosomal protein S3|
          Length = 260

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 88  PEPRQRERGEGDAGRRKGGREGPARRHQAEGR 183
           P PR R+R  GD  R    R+   RR Q E R
Sbjct: 225 PSPRDRDRDRGDRDREPRRRQQQRRRQQFEDR 256

>SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-like protein 3|
            (SPA-1-like protein 3)
          Length = 1781

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 82   RSPEPRQRERGEGDAGRRKGGREGPARRHQAEGRR 186
            ++P P +  +  G  G   GGRE   R H A+ RR
Sbjct: 1327 KAPRPAKPHKPPGSMGLCGGGREAAGRSHHADRRR 1361

>HYDL_STRCO (P42534) Putative polyketide hydroxylase (EC 1.14.13.-) (WhiE ORF|
           VIII)
          Length = 627

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 71  PQGTGAPSRARGRGEKATPGGGREAEKGRPDATKQRGGAP 190
           P G G P    G G    PGG      G PD  +  GGAP
Sbjct: 421 PGGLGGPGGPGGTGGPGGPGG-----PGGPDGPRGAGGAP 455

>RL1_RHOS4 (Q3J5T3) 50S ribosomal protein L1|
          Length = 232

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
 Frame = +3

Query: 198 RGMRSFPVAGGRSVTLALFS-------------DVSNSRELLDLMQSGKLEPEAAFLNAS 338
           RG+ + P   G++V +A+F+             D+  + +L++ +QSGK+E    F    
Sbjct: 60  RGVVTLPNGTGKTVRVAVFARGAKADEAKAAGADIVGAEDLMETIQSGKIE----FDRCI 115

Query: 339 LVPDVFPV 362
             PD+ P+
Sbjct: 116 ATPDMMPL 123

>CB017_HUMAN (Q8NC44) Protein C2orf17|
          Length = 543

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 186 APPLCLVASGRPFSASLPPPGVAFSPLPL 100
           +PPLCLV S    S S+ PP    SP PL
Sbjct: 450 SPPLCLVGSDPAPSPSILPPVPQDSPQPL 478

>ZN499_HUMAN (Q96K62) Zinc finger protein 499|
          Length = 511

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 180 PLCLVASGRPFSASLPPPGVAFSPLPLARLGAPVP 76
           P C+++  RP     P P VA  P  L   G P P
Sbjct: 310 PDCILSGSRPPGVKTPGPPVALFPFHLGAPGPPAP 344

>HNF3G_MOUSE (P35584) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3)
          Length = 353

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 PLCLVASGRPFSASLPPPGVAFSPLPLARLGAPVP 76
           PL    +  P S+  PP G+  SPLP   L  P P
Sbjct: 36  PLNSYMTLNPLSSPYPPGGLQASPLPTGPLAPPAP 70

>HNF3G_BOVIN (Q3Y598) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3)
          Length = 351

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 PLCLVASGRPFSASLPPPGVAFSPLPLARLGAPVP 76
           PL    +  P S+  PP G+  SPLP   L  P P
Sbjct: 36  PLNSYMTLNPLSSPYPPGGLPASPLPTGPLAPPAP 70

>SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 precursor|
          Length = 1222

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 77  GTGAPSRARGRGEKATP--GGGREAEKGRPDATKQRGGA 187
           GT      RGRG  A    GG R + + +P  T++RG A
Sbjct: 107 GTSPAGERRGRGIPAPAKLGGARRSRRAQPPITQERGDA 145

>PYRF_ASPFU (O13410) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase) (Uridine
           5'-monophosphate synthase) (UMP synthase)
          Length = 278

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 171 SRGEALPSERGMRSFPVAGGRSVTLALFSDVSNSRELLDLMQSGKLEPEAAFLNASL 341
           +R    P+    R F +A  +   + + +DV+ +RELLDL  + +L P  A +   +
Sbjct: 11  ARASKHPNPLAKRLFEIAEAKKTNVTVSADVTTTRELLDL--ADRLGPYIAVIKTHI 65

>FBLN2_HUMAN (P98095) Fibulin-2 precursor|
          Length = 1184

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = -3

Query: 198 AQMGAPPLCLVASGRPFSASLPPPGVAFSPLP--LARLGAPVP 76
           A  G PP  L    +P S    PP  A  P P   A LG P P
Sbjct: 223 AGAGGPPAALGGGSQPLSTIQAPPWPAVLPRPTAAAALGPPAP 265

>RL1_RHILO (Q98N69) 50S ribosomal protein L1|
          Length = 232

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
 Frame = +3

Query: 198 RGMRSFPVAGGRSVTLALF-------------SDVSNSRELLDLMQSGKLEPEAAFLNAS 338
           RG+ + P   GRSV +A+F             +D+  + +L+D++Q G ++    F    
Sbjct: 60  RGVVNLPNGTGRSVRVAVFARGDKAEEAKAAGADIVGAEDLVDIVQKGTID----FDRCI 115

Query: 339 LVPDVFPV 362
             PD+ P+
Sbjct: 116 ATPDMMPL 123

>GUC2D_BOVIN (P55203) Retinal guanylyl cyclase 1 precursor (EC 4.6.1.2)|
           (Guanylate cyclase 2D, retinal) (RETGC-1) (Rod outer
           segment membrane guanylate cyclase) (ROS-GC) (Guanylate
           cyclase E) (GC-E)
          Length = 1110

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 250 RARVTLRPPATGKLLMPRSDGSASPLLGGVGP 155
           R R+ LRPP    LL+PRS  SA   +G +GP
Sbjct: 35  RPRLRLRPPLLLLLLLPRSVLSAVFTVGVLGP 66

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 183  PPLCLVASGRPFSASLPPPGVAFSPLPLARLG 88
            PP  +V +  P S  L PPG A SP P   LG
Sbjct: 1943 PPTSVVTALTPTSGELAPPGPAPSPPPPEDLG 1974

>HNF3G_HUMAN (P55318) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3) (Fork head-related protein FKH H3)
          Length = 350

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 180 PLCLVASGRPFSASLPPPGVAFSPLPLARLGAPVP 76
           PL    +  P S+  PP G+  SPLP   L  P P
Sbjct: 36  PLNSYMTLNPLSSPYPPGGLPASPLPSGPLAPPAP 70

>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
          Length = 1744

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 80   TGAPSRARGRGEKATPGGGREAEKGRPDATKQRGGAP 190
            TG P R RG  E        ++E   PD   +R G+P
Sbjct: 1426 TGGPQRRRGSVESGRGDDASDSEAADPDLYARRSGSP 1462


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,486,050
Number of Sequences: 219361
Number of extensions: 739245
Number of successful extensions: 3438
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3391
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)