ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast17a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 505 e-140
2dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 505 e-140
3dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 505 e-140
4dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 505 e-140
5gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene clu... 44 0.42
6dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.42
7gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.7
8gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete... 42 1.7
9emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.7
10emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 42 1.7
11emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl... 42 1.7
12emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for bi... 42 1.7
13gb|AF469938.1| Silene flos-cuculi clone Cuculi4 microsatellite s... 42 1.7
14gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 6.6
15gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.6
16gb|AC163329.6| Mus musculus chromosome 5, clone RP24-294K15, com... 40 6.6
17ref|XM_369445.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 6.6
18ref|XM_369842.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.6
19gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.6
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
21gb|AY324878.1| Oryza sativa (japonica cultivar-group) KUP1 mRNA,... 40 6.6
22gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 6.6
23gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, com... 40 6.6
24gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.6
25gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502... 40 6.6
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
27gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B... 40 6.6
28gb|AE004805.1| Pseudomonas aeruginosa PAO1, section 366 of 529 o... 40 6.6
29gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 40 6.6
30dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.6
31gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the ... 40 6.6
32dbj|AK099276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
33dbj|AK070389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
34gb|AC107709.12| Mus musculus chromosome 5, clone RP23-60E7, comp... 40 6.6
35gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromoso... 40 6.6 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  505 bits (255), Expect = e-140
 Identities = 342/371 (92%)
 Strand = Plus / Minus

                                                                            
Query: 1        cgcaaccacctcgtcgccctcgccgacgccttcccctcgctccaccccaaggcggccctc 60
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 35856616 cgcaaccacctcgtcgccctcgccgacgctttcccctcgctccaccccaaggccgccctc 35856557

                                                                            
Query: 61       ttcacccacaacgacggccgcgccgcccacctgctccaggccgacggcaccgtccccatc 120
                |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 35856556 ttcacccacaacgacggccgcgccgcccacctcctccaggccgacggcaccatccccatc 35856497

                                                                            
Query: 121      caccacgccggggccacctacaacctgcccgccgtcatctggctgcccgagacctacccg 180
                ||||||||||| ||| |||||||||| ||||| ||| ||||||| || ||| ||||||||
Sbjct: 35856496 caccacgccggcgcctcctacaacctccccgctgtcctctggctcccggagccctacccg 35856437

                                                                            
Query: 181      cgctccccgcccctcgtcttcctctcccccacccgcgacatgctcatcaagccccaccac 240
                || || ||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 35856436 cggtcgccgcccctcgtcttcctctccccaacacgcgacatggtcatcaagccccaccac 35856377

                                                                            
Query: 241      ccgctcgtcgaccgctccggcctcgtcgccaacgcgccctacctccgctcatgggtcttc 300
                || |||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 35856376 cccctcgtcgaccgctccggcctcgtcgccaacgccccttacctccgctcttgggttttc 35856317

                                                                            
Query: 301      ccctcctccaacctcctcgacctcgtcagatccctctcccacctcttcggcctcgacccg 360
                ||||||||||||||| |||| |||||| |||||||||| ||||| |||||||||||||||
Sbjct: 35856316 ccctcctccaacctcgtcgatctcgtccgatccctctctcacctgttcggcctcgacccg 35856257

                           
Query: 361      ccgcttttcac 371
                || || |||||
Sbjct: 35856256 cccctcttcac 35856246
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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score =  505 bits (255), Expect = e-140
 Identities = 342/371 (92%)
 Strand = Plus / Minus

                                                                         
Query: 1     cgcaaccacctcgtcgccctcgccgacgccttcccctcgctccaccccaaggcggccctc 60
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 47162 cgcaaccacctcgtcgccctcgccgacgctttcccctcgctccaccccaaggccgccctc 47103

                                                                         
Query: 61    ttcacccacaacgacggccgcgccgcccacctgctccaggccgacggcaccgtccccatc 120
             |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 47102 ttcacccacaacgacggccgcgccgcccacctcctccaggccgacggcaccatccccatc 47043

                                                                         
Query: 121   caccacgccggggccacctacaacctgcccgccgtcatctggctgcccgagacctacccg 180
             ||||||||||| ||| |||||||||| ||||| ||| ||||||| || ||| ||||||||
Sbjct: 47042 caccacgccggcgcctcctacaacctccccgctgtcctctggctcccggagccctacccg 46983

                                                                         
Query: 181   cgctccccgcccctcgtcttcctctcccccacccgcgacatgctcatcaagccccaccac 240
             || || ||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 46982 cggtcgccgcccctcgtcttcctctccccaacacgcgacatggtcatcaagccccaccac 46923

                                                                         
Query: 241   ccgctcgtcgaccgctccggcctcgtcgccaacgcgccctacctccgctcatgggtcttc 300
             || |||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 46922 cccctcgtcgaccgctccggcctcgtcgccaacgccccttacctccgctcttgggttttc 46863

                                                                         
Query: 301   ccctcctccaacctcctcgacctcgtcagatccctctcccacctcttcggcctcgacccg 360
             ||||||||||||||| |||| |||||| |||||||||| ||||| |||||||||||||||
Sbjct: 46862 ccctcctccaacctcgtcgatctcgtccgatccctctctcacctgttcggcctcgacccg 46803

                        
Query: 361   ccgcttttcac 371
             || || |||||
Sbjct: 46802 cccctcttcac 46792
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>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
           insert sequence
          Length = 1547

 Score =  505 bits (255), Expect = e-140
 Identities = 342/371 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcaaccacctcgtcgccctcgccgacgccttcccctcgctccaccccaaggcggccctc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 229 cgcaaccacctcgtcgccctcgccgacgctttcccctcgctccaccccaaggccgccctc 288

                                                                       
Query: 61  ttcacccacaacgacggccgcgccgcccacctgctccaggccgacggcaccgtccccatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 289 ttcacccacaacgacggccgcgccgcccacctcctccaggccgacggcaccatccccatc 348

                                                                       
Query: 121 caccacgccggggccacctacaacctgcccgccgtcatctggctgcccgagacctacccg 180
           ||||||||||| ||| |||||||||| ||||| ||| ||||||| || ||| ||||||||
Sbjct: 349 caccacgccggcgcctcctacaacctccccgctgtcctctggctcccggagccctacccg 408

                                                                       
Query: 181 cgctccccgcccctcgtcttcctctcccccacccgcgacatgctcatcaagccccaccac 240
           || || ||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 409 cggtcgccgcccctcgtcttcctctccccaacacgcgacatggtcatcaagccccaccac 468

                                                                       
Query: 241 ccgctcgtcgaccgctccggcctcgtcgccaacgcgccctacctccgctcatgggtcttc 300
           || |||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 469 cccctcgtcgaccgctccggcctcgtcgccaacgccccttacctccgctcttgggttttc 528

                                                                       
Query: 301 ccctcctccaacctcctcgacctcgtcagatccctctcccacctcttcggcctcgacccg 360
           ||||||||||||||| |||| |||||| |||||||||| ||||| |||||||||||||||
Sbjct: 529 ccctcctccaacctcgtcgatctcgtccgatccctctctcacctgttcggcctcgacccg 588

                      
Query: 361 ccgcttttcac 371
           || || |||||
Sbjct: 589 cccctcttcac 599
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>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
           insert sequence
          Length = 1562

 Score =  505 bits (255), Expect = e-140
 Identities = 342/371 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcaaccacctcgtcgccctcgccgacgccttcccctcgctccaccccaaggcggccctc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 244 cgcaaccacctcgtcgccctcgccgacgctttcccctcgctccaccccaaggccgccctc 303

                                                                       
Query: 61  ttcacccacaacgacggccgcgccgcccacctgctccaggccgacggcaccgtccccatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 304 ttcacccacaacgacggccgcgccgcccacctcctccaggccgacggcaccatccccatc 363

                                                                       
Query: 121 caccacgccggggccacctacaacctgcccgccgtcatctggctgcccgagacctacccg 180
           ||||||||||| ||| |||||||||| ||||| ||| ||||||| || ||| ||||||||
Sbjct: 364 caccacgccggcgcctcctacaacctccccgctgtcctctggctcccggagccctacccg 423

                                                                       
Query: 181 cgctccccgcccctcgtcttcctctcccccacccgcgacatgctcatcaagccccaccac 240
           || || ||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 424 cggtcgccgcccctcgtcttcctctccccaacacgcgacatggtcatcaagccccaccac 483

                                                                       
Query: 241 ccgctcgtcgaccgctccggcctcgtcgccaacgcgccctacctccgctcatgggtcttc 300
           || |||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 484 cccctcgtcgaccgctccggcctcgtcgccaacgccccttacctccgctcttgggttttc 543

                                                                       
Query: 301 ccctcctccaacctcctcgacctcgtcagatccctctcccacctcttcggcctcgacccg 360
           ||||||||||||||| |||| |||||| |||||||||| ||||| |||||||||||||||
Sbjct: 544 ccctcctccaacctcgtcgatctcgtccgatccctctctcacctgttcggcctcgacccg 603

                      
Query: 361 ccgcttttcac 371
           || || |||||
Sbjct: 604 cccctcttcac 614
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>gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene cluser, complete
             sequence; and bacteriophytochrome (bphP), PpsR protein
             (ppsR), cytochrome C2 (cycA), geranylgeranyl
             bacteriochlorophyll reductase (bchP), light harvesting
             pigment major facilitator family (bch2),
             geranylgeranyl-bacteriochlorophyll synthetase (bchG),
             PpsR1 (ppsR1), and transcriptional regulator, AerR (aerR)
             genes, complete cds; and 2-vinyl bacteriochlorophillide
             hydratase BchF subunit (bchF) gene, partial cds
          Length = 30040

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 12    cgtcgccctcgccgacgccttc 33
             ||||||||||||||||||||||
Sbjct: 11926 cgtcgccctcgccgacgccttc 11905
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 81     cgccgcccacctgctccaggccgacg 106
              |||||||||||||||| |||||||||
Sbjct: 944270 cgccgcccacctgctcgaggccgacg 944245
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 127     gccggggccacctacaacctg 147
               |||||||||||||||||||||
Sbjct: 1340426 gccggggccacctacaacctg 1340446
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>gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete genome
          Length = 163025

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    gacggccgcgccgcccacctg 93
             |||||||||||||||||||||
Sbjct: 72461 gacggccgcgccgcccacctg 72481
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>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24
          Length = 299350

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 345    cttcggcctcgacccgccgct 365
              |||||||||||||||||||||
Sbjct: 275891 cttcggcctcgacccgccgct 275911
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 75     cggccgcgccgcccacctgctccag 99
              ||||||||||||| |||||||||||
Sbjct: 145589 cggccgcgccgccgacctgctccag 145565
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>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    cgcccacctgctccaggccga 104
             |||||||||||||||||||||
Sbjct: 35417 cgcccacctgctccaggccga 35397
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>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of
             glycopeptide antibiotic teicoplanin
          Length = 89713

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    cgcccacctgctccaggccga 104
             |||||||||||||||||||||
Sbjct: 42024 cgcccacctgctccaggccga 42004
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>gb|AF469938.1| Silene flos-cuculi clone Cuculi4 microsatellite sequence
          Length = 495

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 ctcgacctcgtcagatccctctccc 340
           ||||||||| |||||||||||||||
Sbjct: 312 ctcgacctcctcagatccctctccc 336
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 195     cgtcttcctctcccccaccc 214
               ||||||||||||||||||||
Sbjct: 1874178 cgtcttcctctcccccaccc 1874197
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     gacggccgcgccgcccacctgctc 96
              ||||||||||||||| ||||||||
Sbjct: 488887 gacggccgcgccgccgacctgctc 488910
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>gb|AC163329.6| Mus musculus chromosome 5, clone RP24-294K15, complete sequence
          Length = 186890

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cccctcgtcttcctctcccc 209
             ||||||||||||||||||||
Sbjct: 60807 cccctcgtcttcctctcccc 60788



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cccctcgtcttcctctcccc 209
             ||||||||||||||||||||
Sbjct: 60764 cccctcgtcttcctctcccc 60745
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>ref|XM_369445.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG06019.4) partial mRNA
          Length = 555

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 309 caacctcctcgacctcgtcagatccctc 336
           ||||||||||| ||| ||||||||||||
Sbjct: 373 caacctcctcggccttgtcagatccctc 346
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>ref|XM_369842.1| Magnaporthe grisea 70-15 hypothetical protein (MG06357.4) partial
           mRNA
          Length = 363

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  tccaccccaaggcggccctc 60
           ||||||||||||||||||||
Sbjct: 87  tccaccccaaggcggccctc 106
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 242     cgctcgtcgaccgctccggcctcg 265
               |||||| |||||||||||||||||
Sbjct: 3299745 cgctcggcgaccgctccggcctcg 3299768
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 11       tcgtcgccctcgccgacgccttcccctc 38
                |||||| |||||||| ||||||||||||
Sbjct: 20377141 tcgtcggcctcgccgtcgccttcccctc 20377168
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>gb|AY324878.1| Oryza sativa (japonica cultivar-group) KUP1 mRNA, complete cds
          Length = 2655

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 243  gctcgtcgaccgctccggcctcgtcgcc 270
            ||||||||||||| ||||||||| ||||
Sbjct: 2131 gctcgtcgaccgccccggcctcgccgcc 2104
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      accacctcgtcgccctcgcc 24
              ||||||||||||||||||||
Sbjct: 648792 accacctcgtcgccctcgcc 648773
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>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence
          Length = 178256

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  cccgcgctccccgcccctcg 196
            ||||||||||||||||||||
Sbjct: 7826 cccgcgctccccgcccctcg 7807
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     tcgtcgccctcgccgacgcc 30
              ||||||||||||||||||||
Sbjct: 956316 tcgtcgccctcgccgacgcc 956335
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>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence
          Length = 180835

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   cccgcgctccccgcccctcg 196
             ||||||||||||||||||||
Sbjct: 92366 cccgcgctccccgcccctcg 92347
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 11       tcgtcgccctcgccgacgccttcccctc 38
                |||||| |||||||| ||||||||||||
Sbjct: 20370170 tcgtcggcctcgccgtcgccttcccctc 20370197
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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete
             sequence
          Length = 152883

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 11    tcgtcgccctcgccgacgccttcccctc 38
             |||||| |||||||| ||||||||||||
Sbjct: 21441 tcgtcggcctcgccgtcgccttcccctc 21468
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>gb|AE004805.1| Pseudomonas aeruginosa PAO1, section 366 of 529 of the complete
            genome
          Length = 10637

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 15   cgccctcgccgacgccttcc 34
            ||||||||||||||||||||
Sbjct: 7499 cgccctcgccgacgccttcc 7518
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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctcgtcttcctctcccccac 212
             ||||||||||||||||||||
Sbjct: 29190 ctcgtcttcctctcccccac 29171
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 342     cctcttcggcctcgacccgc 361
               ||||||||||||||||||||
Sbjct: 2512955 cctcttcggcctcgacccgc 2512936
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>gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the complete genome
          Length = 13283

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   tggctgcccgagacctacccgcgc 183
             ||||||||||| ||||||||||||
Sbjct: 11081 tggctgcccgacacctacccgcgc 11058
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>dbj|AK099276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H10, full
           insert sequence
          Length = 2393

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 11  tcgtcgccctcgccgacgccttcccctc 38
           |||||| |||||||| ||||||||||||
Sbjct: 293 tcgtcggcctcgccgtcgccttcccctc 320
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>dbj|AK070389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048I16, full
           insert sequence
          Length = 2466

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 11  tcgtcgccctcgccgacgccttcccctc 38
           |||||| |||||||| ||||||||||||
Sbjct: 366 tcgtcggcctcgccgtcgccttcccctc 393
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>gb|AC107709.12| Mus musculus chromosome 5, clone RP23-60E7, complete sequence
          Length = 256771

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cccctcgtcttcctctcccc 209
             ||||||||||||||||||||
Sbjct: 72771 cccctcgtcttcctctcccc 72790



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cccctcgtcttcctctcccc 209
             ||||||||||||||||||||
Sbjct: 72728 cccctcgtcttcctctcccc 72747
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>gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromosome unknown, complete
             sequence
          Length = 194387

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    cggccgcgccgcccacctgc 94
             ||||||||||||||||||||
Sbjct: 73972 cggccgcgccgcccacctgc 73953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,818,974
Number of Sequences: 3902068
Number of extensions: 2818974
Number of successful extensions: 71128
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70341
Number of HSP's gapped (non-prelim): 787
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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