ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast16h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 66 2e-08
2gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 1.2
3gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete... 38 4.8
4gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 4.8
5gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 4.8
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
10dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
11gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, comp... 38 4.8
12dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.8
13emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 4.8
14dbj|AK065945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.8
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.8
16gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.8
17emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 38 4.8
18emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 38 4.8

>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 66  ccatggcgagcagcggcagcctggccggtctggcggtgctg 106
           ||||||||||||||||| | |||||||||||||||||||||
Sbjct: 63  ccatggcgagcagcggcgggctggccggtctggcggtgctg 103



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 78      gcggcagcctggccggtctg 97
               ||||||||||||||||||||
Sbjct: 4650072 gcggcagcctggccggtctg 4650053



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>gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete sequence
          Length = 207268

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     ggcgagcagcggcagcctg 88
              |||||||||||||||||||
Sbjct: 103678 ggcgagcagcggcagcctg 103696



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 75      gcagcggcagcctggccgg 93
               |||||||||||||||||||
Sbjct: 3005842 gcagcggcagcctggccgg 3005860



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 75      gcagcggcagcctggccgg 93
               |||||||||||||||||||
Sbjct: 2454158 gcagcggcagcctggccgg 2454140



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     agctaagctaagctagcca 65
              |||||||||||||||||||
Sbjct: 344028 agctaagctaagctagcca 344046



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     agctaagctaagctagcca 65
              |||||||||||||||||||
Sbjct: 340430 agctaagctaagctagcca 340448



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 43      cttcagctaagctaagcta 61
               |||||||||||||||||||
Sbjct: 4205264 cttcagctaagctaagcta 4205246



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 43      cttcagctaagctaagcta 61
               |||||||||||||||||||
Sbjct: 7258723 cttcagctaagctaagcta 7258741



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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431F01
          Length = 143209

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    cttcagctaagctaagcta 61
             |||||||||||||||||||
Sbjct: 60153 cttcagctaagctaagcta 60171



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>gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, complete sequence
          Length = 224634

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     catggcgagcagcggcagc 85
              |||||||||||||||||||
Sbjct: 192591 catggcgagcagcggcagc 192609



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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    cttcagctaagctaagcta 61
             |||||||||||||||||||
Sbjct: 50485 cttcagctaagctaagcta 50467



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      cgagcagcggcagcctggc 90
               |||||||||||||||||||
Sbjct: 2823566 cgagcagcggcagcctggc 2823548



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>dbj|AK065945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F17,
          full insert sequence
          Length = 2088

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 47 agctaagctaagctagcca 65
          |||||||||||||||||||
Sbjct: 30 agctaagctaagctagcca 48



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     agctaagctaagctagcca 65
              |||||||||||||||||||
Sbjct: 340430 agctaagctaagctagcca 340448



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     agctaagctaagctagcca 65
              |||||||||||||||||||
Sbjct: 344028 agctaagctaagctagcca 344046



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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    agctaagctaagctagcca 65
             |||||||||||||||||||
Sbjct: 77079 agctaagctaagctagcca 77097



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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    agctaagctaagctagcca 65
             |||||||||||||||||||
Sbjct: 47748 agctaagctaagctagcca 47766


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 651,602
Number of Sequences: 3902068
Number of extensions: 651602
Number of successful extensions: 52979
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52452
Number of HSP's gapped (non-prelim): 527
length of query: 106
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 85
effective length of database: 17,151,101,840
effective search space: 1457843656400
effective search space used: 1457843656400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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