Clone Information

BLAST Search Result

Clone Name	bast16g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	H1_WHEAT (P27806) Histone H1	71	9e-13
2	H1_LYCPN (P40267) Histone H1	70	2e-12
3	H1_LYCES (P37218) Histone H1	70	3e-12
4	H1_MAIZE (P23444) Histone H1	69	4e-12
5	H12_ARATH (P26569) Histone H1.2	69	6e-12
6	H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)	66	3e-11
7	H1_EUPES (Q9M5W4) Histone H1	66	4e-11
8	H11_ARATH (P26568) Histone H1.1	63	3e-10
9	H11_VOLCA (Q08864) Histone H1-I	53	2e-07
10	H12_VOLCA (Q08865) Histone H1-II	49	5e-06
11	H1_DICDI (P54671) Histone H1	49	5e-06
12	H1A_OLILU (P82898) Histone H1A (Fragment)	47	2e-05
13	H1X_CAEEL (Q18336) Histone H1.X (Histone H1-like protein 1)	42	4e-04
14	H11_CAEEL (P10771) Histone H1.1	42	6e-04
15	H15_CAEEL (O01833) Histone H1.5 (Histone H1-like protein 5)	41	0.001
16	H1B_OLILU (P82899) Histone H1B (Fragment)	41	0.001
17	H5_CHICK (P02259) Histone H5	41	0.001
18	H14_CAEEL (O17536) Histone H1.4 (Histone H1-like protein 4)	40	0.002
19	H1B_STRPU (P15869) Histone H1-beta, late embryonic	40	0.002
20	H5_ANSAN (P02258) Histone H5	40	0.002
21	H1_NEUCR (Q8J0U2) Histone H1	40	0.002
22	H5_CAIMO (P06513) Histone H5	40	0.003
23	H13_CAEEL (Q19743) Histone H1.3 (Histone H1-like protein 3)	39	0.004
24	H12_CAEEL (P15796) Histone H1.2 (Histone H1-like protein 2)	39	0.006
25	H16_CAEEL (O16277) Putative histone H1.6 (Histone H1-like protei...	39	0.006
26	H1_ASCIM (Q9UV33) Histone H1	38	0.011
27	H1D_STRPU (P15870) Histone H1-delta	38	0.011
28	H5B_XENLA (P22845) Histone H5B (XLH5B) (H1E) (H1-SB)	37	0.014
29	H1_EMENI (Q9P8F8) Histone H1	37	0.024
30	H10_RAT (P43278) Histone H1.0 (H1(0)) (Histone H1')	36	0.041
31	H10_MOUSE (P10922) Histone H1' (H1.0) (H1(0))	36	0.041
32	H10_HUMAN (P07305) Histone H1.0 (H1(0)) (Histone H1')	36	0.041
33	H1E_STRPU (P19375) Histone H1, early embryonic	36	0.041
34	H1E_CHITE (P40278) Histone H1E	35	0.054
35	H1E_CHIPA (P40262) Histone H1E	35	0.054
36	H5A_XENLA (P22844) Histone H5A (XLH5A) (H1D) (H1-SA)	35	0.054
37	H1_LYTPI (P06144) Late histone H1	35	0.070
38	H1O_CHITH (Q07134) Histone H1, orphon	35	0.070
39	H1G_STRPU (P07796) Histone H1-gamma, late	35	0.092
40	H1_ECHCR (P02257) Histone H1, gonadal (Fragment)	34	0.12
41	H1_PARAN (P02256) Histone H1, gonadal	34	0.12
42	H1A_PLADU (P06894) Histone H1A, sperm	34	0.12
43	HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)	34	0.12
44	H1_YEAST (P53551) Histone H1	34	0.16
45	H1_ASHGO (Q75C22) Histone H1	33	0.20
46	H1_TIGCA (P35060) Histone H1	33	0.27
47	H1B_PLADU (P06895) Histone H1B, sperm	33	0.35
48	H13_DROVI (Q94972) Histone H1.3	32	0.45
49	H12_DROVI (Q94555) Histone H1.2	32	0.45
50	H11_DROVI (Q24704) Histone H1.1	32	0.45
51	H1L1_OSTED (Q86QH9) Sperm-specific H1/protamine-like protein typ...	32	0.45
52	H1_DROME (P02255) Histone H1	32	0.45
53	H1L2_OSTED (Q86QI0) Sperm-specific H1/protamine-like protein typ...	32	0.45
54	H11_WHEAT (P15871) Histone H1.1 (Fragment)	32	0.59
55	H13_GLYBA (P40265) Histone H1-III	32	0.59
56	H12_GLYBA (P40264) Histone H1-II	32	0.78
57	H1B_CHITE (P40276) Histone H1B	31	1.0
58	H1L5_ENSMI (P27203) Histone H1-like protein EM5 (Fragment)	31	1.0
59	H1_CANGA (Q6FJX6) Histone H1	31	1.0
60	H1_DROHY (P17268) Histone H1	31	1.0
61	H1_CHITH (P21895) Histone H1	31	1.3
62	H1C_CHITE (P40277) Histone H1C	31	1.3
63	H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*) (Sperm...	31	1.3
64	H1L_MYTCA (P22974) Sperm-specific protein PHI-2B (PL-II*) (Sperm...	30	1.7
65	H11_GLYSA (P40266) Histone H1-I	30	2.9
66	H11_GLYBA (P40263) Histone H1-I	30	2.9
67	H13_WHEAT (P15872) Histone H1.3 (Fragments)	29	5.0

>H1_WHEAT (P27806) Histone H1|
          Length = 238

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 32/67 (47%), Positives = 46/67 (68%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLRXXXXXXXX 390
           +HP+Y EM+ EAIAALK+R+GSS++AI K++E+KH   LPANF+K+L  Q++        
Sbjct: 54  AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKL 113

Query: 391 XXXXXSY 411
                SY
Sbjct: 114 TKVKGSY 120

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>H1_LYCPN (P40267) Histone H1|
          Length = 202

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 32/67 (47%), Positives = 44/67 (65%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLRXXXXXXXX 390
           +HP YF+MIKEA+ AL ++ GSS  A+AKY+E+KH   LPANF+K+L +QL+        
Sbjct: 48  THPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKL 107

Query: 391 XXXXXSY 411
                SY
Sbjct: 108 IKIKASY 114

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>H1_LYCES (P37218) Histone H1|
          Length = 287

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 34/52 (65%), Positives = 42/52 (80%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLR 366
           +HP YFEMIK+AI  LK+RTGSS  AI K++EEK  KSLP+NFKK+L  QL+
Sbjct: 55  THPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQ-KSLPSNFKKLLLTQLK 105

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>H1_MAIZE (P23444) Histone H1|
          Length = 245

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 32/52 (61%), Positives = 42/52 (80%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLR 366
           +H  Y EM+ EAI +LK+RTGSSS AIAK+VE+KH   LP NF+K+L+VQL+
Sbjct: 48  THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLK 99

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>H12_ARATH (P26569) Histone H1.2|
          Length = 273

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 34/52 (65%), Positives = 41/52 (78%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLR 366
           SHPTY EMIK+AI  LK+RTGSS  AI K++EEKH KSLP  F+K+L V L+
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKH-KSLPPTFRKLLLVNLK 111

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>H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)|
          Length = 265

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 33/52 (63%), Positives = 41/52 (78%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLR 366
           SHPTY EMIK+AI +LK++ GSS  AIAK++EEK  K LPANFKK+L   L+
Sbjct: 61  SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQ-KQLPANFKKLLLQNLK 111

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>H1_EUPES (Q9M5W4) Histone H1|
          Length = 229

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 31/52 (59%), Positives = 42/52 (80%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLR 366
           SHP++FEMI +AI+ LK+RTGSS  AI K+VE+KH K LP+NF+K+L   L+
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKH-KQLPSNFRKLLLFHLK 100

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>H11_ARATH (P26568) Histone H1.1|
          Length = 274

 Score = 62.8 bits (151), Expect = 3e-10
 Identities = 31/52 (59%), Positives = 39/52 (75%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLR 366
           SHPTY EMIK+AI  LK+RTGSS  AI K++EEK  K LP  F+K+L + L+
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKR-KELPPTFRKLLLLNLK 111

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>H11_VOLCA (Q08864) Histone H1-I|
          Length = 260

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSL-PANFKKMLS 354
           +HP Y EM+K+AI  LK+R GSS  A+ K++E K+GK +   NF K LS
Sbjct: 57  THPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLS 105

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>H12_VOLCA (Q08865) Histone H1-II|
          Length = 240

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSL-PANFKKMLSVQLR 366
           +HP Y +M+ +AI +LK+R GSS  A+ K++E K+GK +    F K LS+ L+
Sbjct: 23  THPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALK 75

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>H1_DICDI (P54671) Histone H1|
          Length = 179

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 28/67 (41%), Positives = 34/67 (50%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQLRXXXXXXXX 390
           +HPTY  MI  AIA  KDRTGSS  AI KY+E  +  + P  FK  L + L+        
Sbjct: 22  NHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVA-PDTFKTQLKLALKRLVAKGTL 80

Query: 391 XXXXXSY 411
                SY
Sbjct: 81  TMVKASY 87

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>H1A_OLILU (P82898) Histone H1A (Fragment)|
          Length = 47

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYVE 306
           PTY++M+K+AI ALKDR GSS  AI KY+E
Sbjct: 1   PTYYDMVKDAIVALKDRNGSSMQAIKKYIE 30

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>H1X_CAEEL (Q18336) Histone H1.X (Histone H1-like protein 1)|
          Length = 232

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH--GKSLP 330
           HP+Y +MIK AI A+ + TGSS  AI KY+ + +  G++LP
Sbjct: 37  HPSYMDMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLP 77

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>H11_CAEEL (P10771) Histone H1.1|
          Length = 207

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP Y  MIKEAI  LKDR G+S  AI K++ + +
Sbjct: 36  AHPPYINMIKEAIKQLKDRKGASKQAILKFISQNY 70

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>H15_CAEEL (O01833) Histone H1.5 (Histone H1-like protein 5)|
          Length = 224

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP +  MI EA++ LKDR GSS VAI K++  K+
Sbjct: 36  AHPPFINMITEAVSNLKDRKGSSRVAIFKFITAKY 70

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>H1B_OLILU (P82899) Histone H1B (Fragment)|
          Length = 42

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +1

Query: 220 TYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           TY+E+IK AI ALK+R GSS+ AI KY+ E +
Sbjct: 1   TYYELIKAAILALKERNGSSAQAIKKYILENN 32

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>H5_CHICK (P02259) Histone H5|
          Length = 189

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           SHPTY EMI  AI A K R GSS  +I KY++  +     A+ +  LS++
Sbjct: 24  SHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIR 73

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>H14_CAEEL (O17536) Histone H1.4 (Histone H1-like protein 4)|
          Length = 252

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPAN 336
           +HP +  M+ EAI+++KDR G S  AI KY+  K+     AN
Sbjct: 50  AHPPFINMVTEAISSIKDRKGPSRAAILKYITTKYTLGDQAN 91

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>H1B_STRPU (P15869) Histone H1-beta, late embryonic|
          Length = 211

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP+  EM+  AI ALK+R GSS+ AI KY+E+ +
Sbjct: 17  AHPSSSEMVLAAITALKERGGSSAQAIRKYIEKNY 51

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>H5_ANSAN (P02258) Histone H5|
          Length = 193

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           SHPTY EMI  AI A K R GSS  +I KYV+  +     A+ +  L+++
Sbjct: 25  SHPTYSEMIAAAIRADKSRGGSSRQSIQKYVKSHYKVGQHADLQIKLAIR 74

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>H1_NEUCR (Q8J0U2) Histone H1|
          Length = 236

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +H +Y +MI +AI ALKDR GSS  A+ KYV
Sbjct: 36  THASYLDMITDAIVALKDRAGSSRQALKKYV 66

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>H5_CAIMO (P06513) Histone H5|
          Length = 193

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           SHP+Y EMI  AI A K R GSS  +I KYV+  +     A+ +  LS++
Sbjct: 25  SHPSYSEMIVAAIRAEKSRGGSSRQSIQKYVKSHYKVGQHADLQIKLSIR 74

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>H13_CAEEL (Q19743) Histone H1.3 (Histone H1-like protein 3)|
          Length = 207

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP Y  M+  AI  LK+R GSS +AI KY+ + +
Sbjct: 36  AHPPYINMVTAAINGLKERKGSSKIAILKYITKNY 70

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>H12_CAEEL (P15796) Histone H1.2 (Histone H1-like protein 2)|
          Length = 190

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP +  M+  AI++LK+R GSS +AI KY+
Sbjct: 36  AHPPFINMVTAAISSLKERKGSSKIAILKYI 66

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>H16_CAEEL (O16277) Putative histone H1.6 (Histone H1-like protein 6)|
          Length = 189

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP +  M+  AI++LK+R GSS +AI KY+
Sbjct: 33  AHPPFINMVTAAISSLKERKGSSKIAILKYI 63

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>H1_ASCIM (Q9UV33) Histone H1|
          Length = 213

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVE 306
           HP+Y EM+ +AI  LK+R GSS  AI K+++
Sbjct: 27  HPSYKEMLTKAITELKERNGSSRQAIKKFIQ 57

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>H1D_STRPU (P15870) Histone H1-delta|
          Length = 185

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVE 306
           SHP Y +MI  A+ +LK++ GSS  AI KYV+
Sbjct: 32  SHPKYSDMIASALESLKEKKGSSRQAILKYVK 63

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>H5B_XENLA (P22845) Histone H5B (XLH5B) (H1E) (H1-SB)|
          Length = 194

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           HP Y +MI +A+ A K R+GSS  +I KY++  +     A+ +  LS++
Sbjct: 23  HPKYSDMILDAVQAKKSRSGSSRQSIQKYIKNNYTVGENADSQIKLSIK 71

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>H1_EMENI (Q9P8F8) Histone H1|
          Length = 200

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +H +Y +MIK+AI  LK+R GSS  +I KYV
Sbjct: 18  THTSYRDMIKDAILNLKERNGSSRQSIKKYV 48

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>H10_RAT (P43278) Histone H1.0 (H1(0)) (Histone H1')|
          Length = 193

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           HP Y +MI  AI A K+R GSS  +I KY++  +     A+ +  LS++
Sbjct: 24  HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIK 72

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>H10_MOUSE (P10922) Histone H1' (H1.0) (H1(0))|
          Length = 193

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           HP Y +MI  AI A K+R GSS  +I KY++  +     A+ +  LS++
Sbjct: 24  HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIK 72

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>H10_HUMAN (P07305) Histone H1.0 (H1(0)) (Histone H1')|
          Length = 193

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           HP Y +MI  AI A K+R GSS  +I KY++  +     A+ +  LS++
Sbjct: 24  HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIK 72

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>H1E_STRPU (P19375) Histone H1, early embryonic|
          Length = 205

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM+  AI  LKDR GSS  AI KY+
Sbjct: 17  AHPPAAEMVATAITELKDRNGSSLQAIKKYI 47

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>H1E_CHITE (P40278) Histone H1E|
          Length = 237

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP   EM+  AI  LK+R GSS +AI K+V  ++
Sbjct: 50  THPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQY 84

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>H1E_CHIPA (P40262) Histone H1E|
          Length = 235

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP   EM+  AI  LK+R GSS +AI K+V  ++
Sbjct: 50  THPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQY 84

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>H5A_XENLA (P22844) Histone H5A (XLH5A) (H1D) (H1-SA)|
          Length = 196

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +1

Query: 214 HPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFKKMLSVQ 360
           HP Y +MI  A+ A K R+GSS  +I KY++  +     A+ +  LS++
Sbjct: 25  HPKYSDMILAAVQAEKSRSGSSRQSIQKYIKNHYKVGENADSQIKLSIK 73

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>H1_LYTPI (P06144) Late histone H1|
          Length = 210

 Score = 35.0 bits (79), Expect = 0.070
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   +M+  AI ALK+R GSS+ AI KY+
Sbjct: 17  AHPPTSQMVVAAITALKERGGSSNQAIKKYI 47

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>H1O_CHITH (Q07134) Histone H1, orphon|
          Length = 244

 Score = 35.0 bits (79), Expect = 0.070
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP   EM+  A+  LK+R GSS +AI K+V  ++
Sbjct: 53  THPPVSEMVVNAVTTLKERGGSSLIAIKKFVAAQY 87

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>H1G_STRPU (P07796) Histone H1-gamma, late|
          Length = 217

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   +M+  A+ ALK+R GSS+ AI KY+
Sbjct: 17  AHPPSSQMVVAAVTALKERGGSSTQAIKKYI 47

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>H1_ECHCR (P02257) Histone H1, gonadal (Fragment)|
          Length = 171

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP   +MI  AIAA K+R GSS   I  Y+  K+
Sbjct: 37  AHPPVIDMITAAIAAQKERRGSSVAKIQSYIAAKY 71

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>H1_PARAN (P02256) Histone H1, gonadal|
          Length = 248

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM++ AI A+K+R GSS+  I  Y+
Sbjct: 41  THPPVLEMVQAAITAMKERKGSSAAKIKSYM 71

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>H1A_PLADU (P06894) Histone H1A, sperm|
          Length = 121

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP    M+  AI  LK+R GSS VAI KY+
Sbjct: 10  AHPPVATMVVTAILGLKERKGSSMVAIKKYI 40

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>HMGYA_SOYBN (Q00423) HMG-Y-related protein A (SB16A protein)|
          Length = 176

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGK 321
           S P Y EMI + + AL +  GS+  AI+KY+E  +G+
Sbjct: 11  SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGE 47

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>H1_YEAST (P53551) Histone H1|
          Length = 258

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           S  +Y E+I E + ALK+R GSS  A+ K+++E +
Sbjct: 43  SSKSYRELIIEGLTALKERKGSSRPALKKFIKENY 77



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 220 TYFEMIKEAIAALKDRTGSSSVAIAKYVEEKHGKSL 327
           TY EMI +++  L D  GSS + + KYV++     L
Sbjct: 179 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKL 214

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>H1_ASHGO (Q75C22) Histone H1|
          Length = 225

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           P Y ++I EA+ +L +R GSS  AI K++ +K+
Sbjct: 25  PKYKDLIVEAVVSLAERGGSSRQAIKKFIRDKY 57

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>H1_TIGCA (P35060) Histone H1|
          Length = 181

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP    M+  AI ALK+R GSS  AI KY+
Sbjct: 20  THPPTSVMVMAAIKALKERNGSSLPAIKKYI 50

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>H1B_PLADU (P06895) Histone H1B, sperm|
          Length = 119

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP     +  AI  LKDR GSS VAI KY+
Sbjct: 8   THPPVATAVVAAILGLKDRKGSSMVAIKKYL 38

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>H13_DROVI (Q94972) Histone H1.3|
          Length = 250

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           SHP   +M+  +I  LK+R GSS +AI KY+
Sbjct: 44  SHPPTQQMVDASIKNLKERGGSSLLAIKKYI 74

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>H12_DROVI (Q94555) Histone H1.2|
          Length = 250

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           SHP   +M+  +I  LK+R GSS +AI KY+
Sbjct: 44  SHPPTQQMVDASIKNLKERGGSSLLAIKKYI 74

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>H11_DROVI (Q24704) Histone H1.1|
          Length = 250

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           SHP   +M+  +I  LK+R GSS +AI KY+
Sbjct: 44  SHPPTQQMVDASIKNLKERGGSSLLAIKKYI 74

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>H1L1_OSTED (Q86QH9) Sperm-specific H1/protamine-like protein type 1 precursor|
           [Contains: Sperm-specific protein OE1 (Sperm-specific
           linker histone H1-like protein OE1); Sperm-specific
           protein OE3 (Protamine-like OS3)]
          Length = 202

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           PT   MI  AI A+K+R GSS  AI KY+
Sbjct: 43  PTTLSMIVAAITAMKNRKGSSVQAIRKYI 71

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>H1_DROME (P02255) Histone H1|
          Length = 256

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           SHP   +M+  +I  LK+R GSS +AI KY+
Sbjct: 45  SHPPTQQMVDASIKNLKERGGSSLLAIKKYI 75

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>H1L2_OSTED (Q86QI0) Sperm-specific H1/protamine-like protein type 2 precursor|
           [Contains: Sperm-specific protein OE2 (Sperm-specific
           linker histone H1-like protein OE2); Sperm-specific
           protein OE3 (Protamine-like OS3)] (Fragment)
          Length = 126

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           PT   MI  AI A+K+R GSS  AI KY+
Sbjct: 7   PTTLSMIVAAITAMKNRKGSSVQAIRKYI 35

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>H11_WHEAT (P15871) Histone H1.1 (Fragment)|
          Length = 25

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 232 MIKEAIAALKDRTGSSSVAIAKYVE 306
           M+ EAIAALK+R GSS  AI K  E
Sbjct: 1   MVSEAIAALKEREGSSEFAIGKKKE 25

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>H13_GLYBA (P40265) Histone H1-III|
          Length = 228

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           +HP   EM+  AI  LK+R GSS  AI K++  ++
Sbjct: 39  THPPVSEMVVNAIKTLKERGGSSLQAIKKFLAAQY 73

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>H12_GLYBA (P40264) Histone H1-II|
          Length = 232

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM+  AI  LK+R GSS  AI K++
Sbjct: 39  THPPVSEMVVNAIKTLKERGGSSLQAIKKFL 69

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>H1B_CHITE (P40276) Histone H1B|
          Length = 232

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM+  A+  LK+R GSS  AI K++
Sbjct: 39  THPPVSEMVVNAVKTLKERGGSSLQAIKKFL 69

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>H1L5_ENSMI (P27203) Histone H1-like protein EM5 (Fragment)|
          Length = 36

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +1

Query: 232 MIKEAIAALKDRTGSSSVAIAKYVEEKHGKSLPANFK 342
           MI  A+ ALK+R GSS  AI KY++        ANFK
Sbjct: 1   MITAAVGALKERGGSSRQAILKYIQ--------ANFK 29

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>H1_CANGA (Q6FJX6) Histone H1|
          Length = 229

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYVEEKH 315
           P Y  +I E + AL +  G+S VA+ KY+++ H
Sbjct: 12  PGYKNLIIEGLKALNNGKGASRVALKKYIKDNH 44

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>H1_DROHY (P17268) Histone H1|
          Length = 249

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   +M+  +I  LK+R GSS +AI KY+
Sbjct: 45  THPPTQQMVDASIQNLKERGGSSLLAIKKYI 75

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>H1_CHITH (P21895) Histone H1|
          Length = 231

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   +MI  AI  LK+R GSS  AI K++
Sbjct: 38  THPPVSDMIVNAIKTLKERGGSSVQAIKKFL 68

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>H1C_CHITE (P40277) Histone H1C|
          Length = 221

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM+  A+  LK+R GSS  AI K++
Sbjct: 38  THPPVSEMVFNAVKTLKERGGSSLQAIKKFL 68

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>H1L_MYTTR (Q05831) Sperm-specific protein PHI-2B (PL-II*) (Sperm-specific|
           linker histone H1-like protein) [Contains:
           Sperm-specific protein PHI-3 (Protamine-like protein
           PHI-3) (PL-IV)]
          Length = 202

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           P+   MI  AI A+K+R GSS  AI KY+
Sbjct: 42  PSTLSMIVAAITAMKNRKGSSVQAIRKYI 70

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>H1L_MYTCA (P22974) Sperm-specific protein PHI-2B (PL-II*) (Sperm-specific|
           linker histone H1-like protein)
          Length = 148

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 PTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           P+   MI  AI A+K+R GSS  AI KY+
Sbjct: 42  PSTLSMIVAAIQAMKNRKGSSVQAIRKYI 70

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>H11_GLYSA (P40266) Histone H1-I|
          Length = 233

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM+  A+  L ++ GSS +AI K++
Sbjct: 51  THPPVSEMVVNALKTLNEKGGSSVIAIKKFL 81

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>H11_GLYBA (P40263) Histone H1-I|
          Length = 233

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 211 SHPTYFEMIKEAIAALKDRTGSSSVAIAKYV 303
           +HP   EM+  A+  L ++ GSS +AI K++
Sbjct: 51  THPPVSEMVVNALKTLNEKGGSSVIAIKKFL 81

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>H13_WHEAT (P15872) Histone H1.3 (Fragments)|
          Length = 31

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 232 MIKEAIAALKDRTGSSSVAIAKYV 303
           M+ EAI ALK+RTGS    I K V
Sbjct: 1   MVSEAITALKERTGSMLTQIKKLV 24


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.125    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,221,344
Number of Sequences: 219361
Number of extensions: 253337
Number of successful extensions: 932
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result