ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast16c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.007
2dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.007
3dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.007
4ref|NM_125017.3| Arabidopsis thaliana protein binding / ubiquiti... 44 0.11
5gb|AY091194.1| Arabidopsis thaliana unknown protein (At5g56340) ... 44 0.11
6gb|AY063905.1| Arabidopsis thaliana unknown protein (At5g56340) ... 44 0.11
7dbj|AB009049.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.11
8ref|XM_450193.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.45
9ref|XM_636982.1| Dictyostelium discoideum hypothetical protein (... 40 1.8
10emb|CR848708.12| Wallaby DNA sequence from clone MEKBa-201B9, co... 40 1.8
11ref|NM_001030880.1| Gallus gallus similar to putative MAPK activ... 40 1.8
12gb|AY013753.1| Aegilops tauschii glutathione-S-transferase 2 and... 40 1.8
13emb|BX883042.1| Rattus norvegicus chromosome 20, major histocomp... 40 1.8
14emb|AJ720259.1| Gallus gallus mRNA for hypothetical protein, clo... 40 1.8
15emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 40 1.8
16dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 1.8
17ref|XM_716677.1| Candida albicans SC5314 hypothetical protein (C... 38 7.0
18ref|XM_716556.1| Candida albicans SC5314 hypothetical protein (C... 38 7.0
19gb|AY271294.1| Rhodothermus marinus mannosyl-3-phosphoglycerate ... 38 7.0
20ref|XM_535987.2| PREDICTED: Canis familiaris similar to tubulin,... 38 7.0
21ref|XM_846290.1| PREDICTED: Canis familiaris similar to tubulin,... 38 7.0
22ref|XM_851157.1| PREDICTED: Canis familiaris similar to tubulin,... 38 7.0
23ref|XM_851116.1| PREDICTED: Canis familiaris similar to tubulin,... 38 7.0
24ref|XM_843368.1| PREDICTED: Canis familiaris similar to tubulin,... 38 7.0
25gb|DQ127747.1| Emiliania huxleyi virus 163 clone mike242.seq par... 38 7.0
26gb|DQ127565.1| Emiliania huxleyi virus 163 clone new243.seq part... 38 7.0
27emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on ch... 38 7.0
28emb|AL353658.33| Human DNA sequence from clone RP11-358D14 on ch... 38 7.0
29gb|AC092898.15| Homo sapiens 3 BAC RP11-321A2 (Roswell Park Canc... 38 7.0
30emb|Y19187.1|GGY19187 Gallus gallus mRNA for partial aczonin, XL... 38 7.0
31gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 38 7.0
32gb|CP000264.1| Jannaschia sp. CCS1, complete genome 38 7.0
33emb|AJ698933.1| Populus deltoides x Populus maximowiczii partial... 38 7.0
34gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 38 7.0
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
37dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
38dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
39dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
40ref|XM_315261.2| Anopheles gambiae str. PEST ENSANGP00000022311 ... 38 7.0
41ref|XM_307209.2| Anopheles gambiae str. PEST ENSANGP00000002136 ... 38 7.0
42emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 38 7.0
43gb|AY107196.1| Zea mays PCO076336 mRNA sequence 38 7.0 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 112      ggcggtaatggcggtggaggaggtggccgagagctg 147
                |||| |||||||||||||||||| ||| ||||||||
Sbjct: 21186882 ggcgctaatggcggtggaggaggcggcggagagctg 21186917
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>dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full
           insert sequence
          Length = 2263

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 112 ggcggtaatggcggtggaggaggtggccgagagctg 147
           |||| |||||||||||||||||| ||| ||||||||
Sbjct: 27  ggcgctaatggcggtggaggaggcggcggagagctg 62
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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 112   ggcggtaatggcggtggaggaggtggccgagagctg 147
             |||| |||||||||||||||||| ||| ||||||||
Sbjct: 57639 ggcgctaatggcggtggaggaggcggcggagagctg 57674
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>ref|NM_125017.3| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT5G56340 mRNA, complete cds
          Length = 1484

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 113 gcggtaatggcggtggaggaggtggc 138
           ||||||||||||||||||| ||||||
Sbjct: 199 gcggtaatggcggtggaggtggtggc 224
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>gb|AY091194.1| Arabidopsis thaliana unknown protein (At5g56340) mRNA, complete cds
          Length = 1222

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 113 gcggtaatggcggtggaggaggtggc 138
           ||||||||||||||||||| ||||||
Sbjct: 119 gcggtaatggcggtggaggtggtggc 144
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>gb|AY063905.1| Arabidopsis thaliana unknown protein (At5g56340) mRNA, complete cds
          Length = 1478

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 113 gcggtaatggcggtggaggaggtggc 138
           ||||||||||||||||||| ||||||
Sbjct: 206 gcggtaatggcggtggaggtggtggc 231
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>dbj|AB009049.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCD7
          Length = 87685

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 113   gcggtaatggcggtggaggaggtggc 138
             ||||||||||||||||||| ||||||
Sbjct: 31491 gcggtaatggcggtggaggtggtggc 31516
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>ref|XM_450193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 119 atggcggtggaggaggtggccgagagctg 147
           |||||||||||||||| ||| ||||||||
Sbjct: 1   atggcggtggaggaggcggcggagagctg 29
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>ref|XM_636982.1| Dictyostelium discoideum hypothetical protein (DDB0204371), partial
           mRNA
          Length = 1371

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 115 ggtaatggcggtggaggaggtggc 138
           |||||||| |||||||||||||||
Sbjct: 374 ggtaatggaggtggaggaggtggc 351
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>emb|CR848708.12| Wallaby DNA sequence from clone MEKBa-201B9, complete sequence
          Length = 194524

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    ggtaatggcggtggaggagg 134
              ||||||||||||||||||||
Sbjct: 146742 ggtaatggcggtggaggagg 146723
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>ref|NM_001030880.1| Gallus gallus similar to putative MAPK activating protein
           (LOC419462), mRNA
          Length = 2963

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 gaggaggtggccgagagctg 147
           ||||||||||||||||||||
Sbjct: 39  gaggaggtggccgagagctg 58
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>gb|AY013753.1| Aegilops tauschii glutathione-S-transferase 2 and glutathione
            S-transferase 1 genes, complete cds
          Length = 13710

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  ggcggtggaggaggtggccg 140
            ||||||||||||||||||||
Sbjct: 6557 ggcggtggaggaggtggccg 6538
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>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 1/11
          Length = 348780

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   atggcggtggaggaggtggc 138
             ||||||||||||||||||||
Sbjct: 46612 atggcggtggaggaggtggc 46631
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>emb|AJ720259.1| Gallus gallus mRNA for hypothetical protein, clone 13j19
          Length = 2963

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 gaggaggtggccgagagctg 147
           ||||||||||||||||||||
Sbjct: 39  gaggaggtggccgagagctg 58
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>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 115    ggtaatggcggtggaggaggtggc 138
              ||||||||||||||||||| ||||
Sbjct: 306146 ggtaatggcggtggaggagatggc 306123



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    ggcggtaatggcggtggag 130
              |||||||||||||||||||
Sbjct: 311519 ggcggtaatggcggtggag 311501



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    ggcggtaatggcggtggag 130
              |||||||||||||||||||
Sbjct: 311438 ggcggtaatggcggtggag 311420



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 112    ggcggtaatggcggtggag 130
              |||||||||||||||||||
Sbjct: 311399 ggcggtaatggcggtggag 311381



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 115    ggtaatggcggtggaggag 133
              |||||||||||||||||||
Sbjct: 310124 ggtaatggcggtggaggag 310106
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 120     tggcggtggaggaggtggcc 139
               ||||||||||||||||||||
Sbjct: 1389631 tggcggtggaggaggtggcc 1389650
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>ref|XM_716677.1| Candida albicans SC5314 hypothetical protein (CaO19_1698), mRNA
          Length = 1899

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 120  tggcggtggaggaggtggc 138
            |||||||||||||||||||
Sbjct: 1482 tggcggtggaggaggtggc 1464
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>ref|XM_716556.1| Candida albicans SC5314 hypothetical protein (CaO19_9265), mRNA
          Length = 1899

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 120  tggcggtggaggaggtggc 138
            |||||||||||||||||||
Sbjct: 1482 tggcggtggaggaggtggc 1464
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>gb|AY271294.1| Rhodothermus marinus mannosyl-3-phosphoglycerate synthase (mpgS) and
            mannosyl-3-phosphoglycerate phosphatase (mpgP) genes,
            complete cds
          Length = 3425

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 123  cggtggaggaggtggccga 141
            |||||||||||||||||||
Sbjct: 2731 cggtggaggaggtggccga 2749
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>ref|XM_535987.2| PREDICTED: Canis familiaris similar to tubulin, beta, 2
           (LOC478825), mRNA
          Length = 974

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 121 ggcggtggaggaggtggccgagagctg 147
           ||||| ||||||||||||| |||||||
Sbjct: 783 ggcggaggaggaggtggcctagagctg 809
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>ref|XM_846290.1| PREDICTED: Canis familiaris similar to tubulin, beta 5 (LOC609086),
           mRNA
          Length = 619

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 121 ggcggtggaggaggtggccgagagctg 147
           ||||| ||||||||||||| |||||||
Sbjct: 432 ggcggaggaggaggtggcctagagctg 458
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>ref|XM_851157.1| PREDICTED: Canis familiaris similar to tubulin, beta, 2, transcript
            variant 3 (LOC491231), mRNA
          Length = 1453

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 121  ggcggtggaggaggtggccgagagctg 147
            ||||| ||||||||||||| |||||||
Sbjct: 1283 ggcggaggaggaggtggcctagagctg 1309
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>ref|XM_851116.1| PREDICTED: Canis familiaris similar to tubulin, beta, 2, transcript
            variant 2 (LOC491231), mRNA
          Length = 1570

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 121  ggcggtggaggaggtggccgagagctg 147
            ||||| ||||||||||||| |||||||
Sbjct: 1398 ggcggaggaggaggtggcctagagctg 1424
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>ref|XM_843368.1| PREDICTED: Canis familiaris similar to tubulin, beta, 2, transcript
            variant 1 (LOC491231), mRNA
          Length = 1542

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 121  ggcggtggaggaggtggccgagagctg 147
            ||||| ||||||||||||| |||||||
Sbjct: 1370 ggcggaggaggaggtggcctagagctg 1396
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>gb|DQ127747.1| Emiliania huxleyi virus 163 clone mike242.seq partial sequence
          Length = 404

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 112 ggcggtaatggcggtggag 130
           |||||||||||||||||||
Sbjct: 362 ggcggtaatggcggtggag 344
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>gb|DQ127565.1| Emiliania huxleyi virus 163 clone new243.seq partial sequence
          Length = 3944

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 112 ggcggtaatggcggtggag 130
           |||||||||||||||||||
Sbjct: 23  ggcggtaatggcggtggag 5
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>emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on chromosome X Contains a
             tubulin beta polypeptide pseudogene, complete sequence
          Length = 197611

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 127   ggaggaggtggccgagagc 145
             |||||||||||||||||||
Sbjct: 19086 ggaggaggtggccgagagc 19104
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>emb|AL353658.33| Human DNA sequence from clone RP11-358D14 on chromosome 20 Contains
             part of the KCNQ2 gene for potassium voltage-gated channel
             protein (KQT-like subfamily member 2), a putative novel
             gene, ESTs, GSSs and five CpG islands, complete sequence
          Length = 56475

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   tggaggaggtggccgagag 144
             |||||||||||||||||||
Sbjct: 32685 tggaggaggtggccgagag 32667
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>gb|AC092898.15| Homo sapiens 3 BAC RP11-321A2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 122934

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 115   ggtaatggcggtggaggaggtgg 137
             |||||||| ||||||||||||||
Sbjct: 42986 ggtaatggtggtggaggaggtgg 43008
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>emb|Y19187.1|GGY19187 Gallus gallus mRNA for partial aczonin, XL spliced variant (acz gene)
          Length = 15717

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 115  ggtaatggcggtggaggaggtgg 137
            ||||||||||| |||||||||||
Sbjct: 7022 ggtaatggcggaggaggaggtgg 7000
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 120     tggcggtggaggaggtggc 138
               |||||||||||||||||||
Sbjct: 1942405 tggcggtggaggaggtggc 1942387
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 89      ccggaatccgcgaccgaga 107
               |||||||||||||||||||
Sbjct: 3639159 ccggaatccgcgaccgaga 3639177
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>emb|AJ698933.1| Populus deltoides x Populus maximowiczii partial mRNA for
           hypothetical protein
          Length = 512

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 125 gtggaggaggtggccgagagctg 147
           ||||||||||||||| |||||||
Sbjct: 347 gtggaggaggtggcccagagctg 369
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 113     gcggtaatggcggtggaggaggt 135
               |||||| ||||||||||||||||
Sbjct: 2808776 gcggtagtggcggtggaggaggt 2808798
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 112      ggcggtaatggcggtggaggagg 134
                |||||||||||||| ||||||||
Sbjct: 12489742 ggcggtaatggcggcggaggagg 12489720
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 121      ggcggtggaggaggtggcc 139
                |||||||||||||||||||
Sbjct: 23714720 ggcggtggaggaggtggcc 23714738



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 110      ggggcggtaatggcggtggagga 132
                ||||||||||||||| |||||||
Sbjct: 14477471 ggggcggtaatggcgctggagga 14477449
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>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0029C06
          Length = 156500

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   ggcggtggaggaggtggcc 139
             |||||||||||||||||||
Sbjct: 62796 ggcggtggaggaggtggcc 62814
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>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 110   ggggcggtaatggcggtggagga 132
             ||||||||||||||| |||||||
Sbjct: 70645 ggggcggtaatggcgctggagga 70623
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>dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0613B07
          Length = 191756

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 112    ggcggtaatggcggtggaggagg 134
              |||||||||||||| ||||||||
Sbjct: 134024 ggcggtaatggcggcggaggagg 134002
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>ref|XM_315261.2| Anopheles gambiae str. PEST ENSANGP00000022311
           (ENSANGG00000019822), partial mRNA
          Length = 731

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 124 ggtggaggaggtggccgag 142
           |||||||||||||||||||
Sbjct: 63  ggtggaggaggtggccgag 81
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>ref|XM_307209.2| Anopheles gambiae str. PEST ENSANGP00000002136
           (ENSANGG00000001800), partial mRNA
          Length = 733

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 124 ggtggaggaggtggccgag 142
           |||||||||||||||||||
Sbjct: 63  ggtggaggaggtggccgag 81
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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    gagatcggggcggtaatgg 122
              |||||||||||||||||||
Sbjct: 217035 gagatcggggcggtaatgg 217017
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>gb|AY107196.1| Zea mays PCO076336 mRNA sequence
          Length = 811

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 atggcggtggaggaggtgg 137
           |||||||||||||||||||
Sbjct: 414 atggcggtggaggaggtgg 432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 658,277
Number of Sequences: 3902068
Number of extensions: 658277
Number of successful extensions: 78295
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77833
Number of HSP's gapped (non-prelim): 462
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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