ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast16a05 |
|---|---|
| Clone Library Name | barley_pub |
>RCD1_SCHPO (Q92368) Cell differentiation protein rcd1| Length = 283 Score = 204 bits (518), Expect = 5e-53 Identities = 102/129 (79%), Positives = 110/129 (85%) Frame = +3 Query: 3 YPSLSPPTLSPVASNRVCNALALLQCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFE 182 YP L+PPTL+ SNRVCNALALLQC+ASHPETRI FLNAHI L+LYPFLNT SK++PFE Sbjct: 66 YPLLNPPTLTGPTSNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFE 125 Query: 183 YLRLTSLGVIGALVKVDDSEVIGFLLQTEIIPLCLRTMEMGSELSKTVATFIVXKILLDD 362 YLRLTSLGVIGALVK D EVI FLL TEIIPLCLR ME GSELSKTVA FIV K L DD Sbjct: 126 YLRLTSLGVIGALVKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDD 185 Query: 363 IGLRYICAT 389 +GL+YIC T Sbjct: 186 VGLQYICQT 194
>YN28_YEAST (P53829) Hypothetical 41.2 kDa protein in PLC1-SEC21 intergenic| region Length = 373 Score = 191 bits (484), Expect = 5e-49 Identities = 96/129 (74%), Positives = 107/129 (82%) Frame = +3 Query: 3 YPSLSPPTLSPVASNRVCNALALLQCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFE 182 YP L P LS SNRVCNAL LLQCVASHPET+ FL AHIPL+L+PFLNTTS+ R FE Sbjct: 158 YPMLQPQMLSNNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLFPFLNTTSRQRTFE 217 Query: 183 YLRLTSLGVIGALVKVDDSEVIGFLLQTEIIPLCLRTMEMGSELSKTVATFIVXKILLDD 362 YLRLTSLGVIGALVK D +VI FLL+T+I+PLCLR ME SELSKTVA FI+ KILLDD Sbjct: 218 YLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSKTVAIFILQKILLDD 277 Query: 363 IGLRYICAT 389 +GL+YICAT Sbjct: 278 VGLQYICAT 286
>IPO4_MOUSE (Q8VI75) Importin-4 (Importin 4a) (Imp4a) (Ran-binding protein 4)| (RanBP4) Length = 1082 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/91 (28%), Positives = 38/91 (41%) Frame = +3 Query: 24 TLSPVASNRVCNALALLQCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSL 203 TL P+ + C AL L + ET +P +N H+ L L E LR+ L Sbjct: 212 TLIPLDEVKACEALEALDEML---ETELPIINPHLSEVLTFCLEVAKNVALGEPLRVRVL 268 Query: 204 GVIGALVKVDDSEVIGFLLQTEIIPLCLRTM 296 + LVKV LL+ ++P L + Sbjct: 269 CCLTFLVKVKSKA----LLKNRLVPPLLHAL 295
>MIG1_CANAL (Q9Y7G2) Regulatory protein MIG1| Length = 574 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 275 DYFSLKQKSNNFRIINLHKSTNNTQAGKPQVLKRSCLAG 159 DYF K SNN R+ N S+ ++ +GK + + LAG Sbjct: 330 DYFQQKSNSNNSRLFNASSSSLSSLSGKIRSSSSTNLAG 368
>NADA_PYRFU (Q8TZL3) Quinolinate synthetase A| Length = 303 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/79 (24%), Positives = 40/79 (50%) Frame = +3 Query: 12 LSPPTLSPVASNRVCNALALLQCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFEYLR 191 L+P + + + R A+A + V E + + NA + LY+ N+T++T+ + + Sbjct: 72 LNPDKIVLIPNKRATCAMANMLKVKHILEAKKKYPNAPVVLYV----NSTAETKAYADVT 127 Query: 192 LTSLGVIGALVKVDDSEVI 248 +TS + + K+D +I Sbjct: 128 VTSANAVDIIRKLDSDVII 146
>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein| 4.4) (Ultrahigh sulfur keratin-associated protein 4.4) Length = 166 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +2 Query: 20 SYFIASCIKP-CLQCTCTSSVCC 85 SY ++SC +P C Q TC + CC Sbjct: 124 SYCVSSCCRPQCCQTTCCRTTCC 146
>GP110_MOUSE (Q8VEC3) G-protein coupled receptor 110 precursor| Length = 908 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = +2 Query: 44 KPCLQCTCTSSVCCFTP*DQDPILECSHPTVPVP 145 K L+C C S F P DP C H T PVP Sbjct: 97 KGFLECACEDSYTWFPPSCLDPQNCCLHTTGPVP 130
>TRPM8_HUMAN (Q7Z2W7) Transient receptor potential cation channel subfamily M| member 8 (Transient receptor potential-p8) (Trp-p8) (Long transient receptor potential channel 6) (LTrpC6) Length = 1104 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%) Frame = +2 Query: 5 PFTFTSYFIASCIKPCLQCTCT-----SSVCCFTP*DQDPI 112 PF +YF +K C +C C SSVCCF D + + Sbjct: 1014 PFIVFAYFYM-VVKKCFKCCCKEKNMESSVCCFKNEDNETL 1053
>KRA93_HUMAN (Q9BYQ3) Keratin-associated protein 9-3 (Keratin-associated protein| 9.3) (Ultrahigh sulfur keratin-associated protein 9.3) Length = 159 Score = 28.9 bits (63), Expect = 3.1 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +2 Query: 29 IASCIKPCLQCTCTSSVCCFT 91 ++SC +PC TC + CC T Sbjct: 39 VSSCCQPCCHPTCCQNTCCRT 59
>YIW2_YEAST (P40586) Hypothetical 27.4 kDa protein in HYR1 3'region| Length = 236 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/89 (25%), Positives = 36/89 (40%) Frame = +3 Query: 108 PFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDSEVIGFLLQTEIIPLCL 287 PF N L LN T T PF + + +G L + E G L + + Sbjct: 67 PFTNLEEYLEFIKELNETKDTVPFAIINKETERAVGTLCLIRIDEANGSL----EVGYVV 122 Query: 288 RTMEMGSELSKTVATFIVXKILLDDIGLR 374 + E+ + T A F++ K + DD+ R Sbjct: 123 FSPELQKTIIATEAQFLLMKYVFDDLQYR 151
>KRA98_HUMAN (Q9BYQ0) Keratin-associated protein 9-8 (Keratin-associated| protein 9.8) (Ultrahigh sulfur keratin-associated protein 9.8) Length = 159 Score = 28.5 bits (62), Expect = 4.0 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 29 IASCIKPCLQCTCTSSVCC 85 ++SC +PC + TC + CC Sbjct: 39 VSSCCQPCCRPTCCQNTCC 57
>KRA94_HUMAN (Q9BYQ2) Keratin-associated protein 9-4 (Keratin-associated protein| 9.4) (Ultrahigh sulfur keratin-associated protein 9.4) Length = 154 Score = 28.5 bits (62), Expect = 4.0 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 29 IASCIKPCLQCTCTSSVCC 85 ++SC +PC + TC + CC Sbjct: 44 VSSCCQPCCRPTCCQNTCC 62
>KAD_LACLC (P27143) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 215 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +3 Query: 204 GVIGALVKVDDSEVIGFLL----QTEIIPLCLRTM--EMGSELSKTVATFIVXKILLDDI 365 G++ + DD + GFLL +T L TM E+G +L V + IL+D + Sbjct: 66 GIVKERLAQDDIKASGFLLDGYPRTIDQAHALDTMLEELGIKLDAVVNIVVNPNILVDRL 125 Query: 366 GLRYICATAXA 398 RYIC A Sbjct: 126 SGRYICRNCGA 136
>NADA_PYRAB (Q9V2R2) Quinolinate synthetase A| Length = 308 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/79 (26%), Positives = 39/79 (49%) Frame = +3 Query: 12 LSPPTLSPVASNRVCNALALLQCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFEYLR 191 L+P + S R A+A + V E + + NA + LY+ N+T++T+ + + Sbjct: 77 LNPDKTVLLPSRRATCAMANMLKVEHIIEAKRKYPNAPVVLYV----NSTAETKAYADVT 132 Query: 192 LTSLGVIGALVKVDDSEVI 248 +TS + + K+D VI Sbjct: 133 VTSANAVKIVSKLDADVVI 151
>KAD_LACLA (P58117) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 215 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +3 Query: 204 GVIGALVKVDDSEVIGFLL----QTEIIPLCLRTM--EMGSELSKTVATFIVXKILLDDI 365 G++ + DD + GFLL +T L TM E+G +L V + IL+D + Sbjct: 66 GIVKERLAQDDIKASGFLLDGYPRTIDQAHALDTMLEELGIKLDAVVNIVVNPDILVDRL 125 Query: 366 GLRYICATAXA 398 RYIC A Sbjct: 126 SGRYICRNCGA 136
>DPO3X_BACSU (P09122) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 563 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/59 (32%), Positives = 33/59 (55%) Frame = +3 Query: 66 ALLQCVASHPETRIPFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDSE 242 ALL+ + PE I F+ A + P L S+ + F++ R+TS ++G + K+ D+E Sbjct: 138 ALLKTLEEPPEHCI-FILATTEPHKIP-LTIISRCQRFDFKRITSQAIVGRMNKIVDAE 194
>RR4_NEPOL (Q9TKX5) Chloroplast 30S ribosomal protein S4| Length = 202 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 278 RDYFSLKQKSNNFRIINLHKSTNNTQAGKPQV-LKRSCLAGSIQERVQVQW 129 ++ S++ S + ++I + ST + P + LK+ L G+IQE + QW Sbjct: 134 KEKISIRSNSRSRKLIEGYMSTMGSIVTPPHLELKKEKLEGNIQEIIDRQW 184
>RPOF_STRCO (P37971) RNA polymerase sigma-F factor| Length = 287 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 90 HPETRIPFLNAHIPLYLYPFLNTTSKTRPFE-YLRLTSLGVIGALVKVDDSEVIGF 254 H R + A++PL Y S+ P E +++ ++G+I A+ + D + F Sbjct: 60 HDRVRAALIEANLPLVRYAAARFRSRNEPMEDVVQVGTIGLINAIDRFDPERGVQF 115
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = -2 Query: 308 TAHLHSTET*RDYFSLKQKSNNFRIINLHKSTNNTQAGKPQVLK 177 T+HL +T ++ LK+++ + H S N+ Q+ KP V+K Sbjct: 4711 TSHLDNTPR---WYPLKEQTESIEHGKSHSSQNSQQSPKPSVIK 4751
>ALMS1_HUMAN (Q8TCU4) Alstrom syndrome protein 1| Length = 4167 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Frame = -2 Query: 257 QKSNNFRIINLHKSTNNT-QAGKPQVLKRSCLAGSIQERV-QVQWDVSIQEWDPGLRV*S 84 QK F+ +L KS NT + K +VL S Q ++ Q+++D I PG S Sbjct: 3673 QKKKRFK--SLEKSHKNTGELKKSKVLSHHRAGRSNQIKIEQIKFDKYILSKQPGFNYIS 3730 Query: 83 NTLKKCK 63 NT C+ Sbjct: 3731 NTSSDCR 3737
>KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-associated protein| 9.9) (Ultrahigh sulfur keratin-associated protein 9.9) Length = 154 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = +2 Query: 29 IASCIKPCLQCTCTSSVCCFT 91 ++SC +PC + C + CC T Sbjct: 44 VSSCCQPCCRPACCQNTCCRT 64
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -1 Query: 138 GTVGCEHSRMGSWSQGVKQHTEEVQVHCRHGLM 40 G GC G ++G + H + Q HCR G M Sbjct: 2063 GCGGCRPCACGPAAEGSECHPQSGQCHCRPGTM 2095
>CCA_LEGPA (Q5X1E5) Multifunctional CCA protein [Includes: CCA-adding enzyme| (EC 2.7.7.25) (EC 2.7.7.21) (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cycli Length = 410 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 221 KSTNNTQAGKPQVLKRSCLAGSIQERVQVQWDVSIQEWDP 102 K N T+ ++K+ LA I ERV +W S+QE +P Sbjct: 151 KIANETRLLMYSMVKQGELAHLIPERVWQEWQKSLQEKNP 190
>NU2M_OENBE (P93401) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 488 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Frame = -3 Query: 145 GYRYSGM*AFKNGILVSGCE-------ATH*RSASALQTRFDATGDKVGG 17 G +Y + AF +GIL+ GC ATH + + T ++ TG + G Sbjct: 165 GLKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSG 214
>NU2M_ARATH (O05000) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 499 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Frame = -3 Query: 145 GYRYSGM*AFKNGILVSGCE-------ATH*RSASALQTRFDATGDKVGG 17 G +Y + AF +GIL+ GC ATH + + T ++ TG + G Sbjct: 176 GLKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSG 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,986,949 Number of Sequences: 219361 Number of extensions: 1107576 Number of successful extensions: 3189 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2937 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3172 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
