ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast15c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M63799.1|BLYACL2 Barley acyl carrier protein II (Ac12) mRNA, ... 573 e-160
2ref|XM_483668.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
3dbj|D10420.1|RICKN33 Oryza sativa mRNA for acyl carrier protein ... 82 2e-12
4dbj|AK120938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|AF457946.1| Zea mays clone cho1c.pk002.m24, mRNA sequence 74 4e-10
6gb|BT016215.1| Zea mays clone Contig48 mRNA sequence 64 4e-07
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
8dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9gb|AY104517.1| Zea mays PCO060888 mRNA sequence 58 2e-05
10gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL03... 56 9e-05
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
12dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
13gb|BT019098.1| Zea mays clone Contig697.F mRNA sequence 54 3e-04
14gb|AY104707.1| Zea mays PCO060889 mRNA sequence 54 3e-04
15gb|M24426.1|BLYACPIII Barley acyl carrier protein III (ACP III) ... 54 3e-04
16emb|X57956.1|ZMACPAA Z.mays acp mRNA for acyl carrier protein 48 0.021
17gb|M58754.1|BLYACL3 Hordeum vulgare acyl carrier protein III (Ac... 48 0.021
18gb|AC087359.13| Homo sapiens chromosome 8, clone RP11-446H10, co... 46 0.084
19ref|XM_517647.1| PREDICTED: Pan troglodytes similar to KIAA0878 ... 44 0.33
20gb|BC047884.1| Homo sapiens Rho-related BTB domain containing 3,... 44 0.33
21gb|BC020231.1| Homo sapiens Rho-related BTB domain containing 3,... 44 0.33
22gb|BC013169.1| Homo sapiens Rho-related BTB domain containing 3,... 44 0.33
23emb|CR596551.1| full-length cDNA clone CS0DA010YB13 of Neuroblas... 44 0.33
24gb|AC008840.5| Homo sapiens chromosome 5 clone CTD-2154I11, comp... 44 0.33
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
26gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3... 44 0.33
27dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
28gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 1.3
29ref|NM_001032750.1| Takifugu rubripes coagulation factor VIII pr... 42 1.3
30ref|XM_888675.2| PREDICTED: Mus musculus AT rich interactive dom... 42 1.3
31ref|XM_139711.8| PREDICTED: Mus musculus AT rich interactive dom... 42 1.3
32ref|XM_973595.1| PREDICTED: Mus musculus AT rich interactive dom... 42 1.3
33ref|XM_983766.1| PREDICTED: Mus musculus AT rich interactive dom... 42 1.3
34gb|AC126929.3| Mus musculus BAC clone RP24-465A20 from chromosom... 42 1.3
35emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC... 42 1.3
36emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 1.3
37emb|AL591143.11| Mouse DNA sequence from clone RP23-210L24 on ch... 42 1.3
38dbj|AK153615.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.3
39dbj|AK052216.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 42 1.3
40dbj|AK044797.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 42 1.3
41gb|AY946348.1| Chlamydomonas reinhardtii low photochemical bleac... 42 1.3
42gb|AF465279.1| Takifugu rubripes coagulation factor VIII precurs... 42 1.3
43gb|AC164651.3| Ornithorhynchus anatinus BAC clone OABb-375A1 fro... 42 1.3
44emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC... 42 1.3
45ref|XM_957438.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.2
46ref|XM_329023.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.2
47gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.2
48emb|AL138789.12| Human DNA sequence from clone RP4-694A7 on chro... 40 5.2
49gb|AC073493.27| Homo sapiens Xp BAC RP11-631N21 (Roswell Park Ca... 40 5.2
50gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.2
51emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen... 40 5.2
52gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.2
53gb|AC073429.6| Homo sapiens BAC clone RP11-775H9 from 4, complet... 40 5.2
54dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
55gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.2
56dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 5.2
57dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
58dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
59dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
60dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
61dbj|AK121642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
62gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence 40 5.2
63gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence 40 5.2
64dbj|AP006114.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.2
65emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chr... 40 5.2 
>gb|M63799.1|BLYACL2 Barley acyl carrier protein II (Ac12) mRNA, complete cds
          Length = 706

 Score =  573 bits (289), Expect = e-160
 Identities = 299/301 (99%), Gaps = 1/301 (0%)
 Strand = Plus / Plus

                                                                       
Query: 90  tctccccctgtcccgtctcccccatggcctccgccgcggcgtccgccgtctccttcgcca 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tctccccctgtcccgtctcccccatggcctccgccgcggcgtccgccgtctccttcgcca 134

                                                                       
Query: 150 ggcccgtcaaggcaatctgtgtcaactcggtctccttctctgctctaaggaaagacaatg 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggcccgtcaaggcaatctgtgtcaactcggtctccttctctgctctaaggaaagacaatg 194

                                                                       
Query: 210 tatccttccgtttgcagccagttccccagagattttctgtttgctgtgcagccaaaaagg 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatccttccgtttgcagccagttccccagagattttctgtttgctgtgcagccaaaaagg 254

                                                                       
Query: 270 agacagtagagaaggtttgtgatattgtgaagagccagcttgcgctgtctgatgacactg 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agacagtagagaaggtttgtgatattgtgaagagccagcttgcgctgtctgatgacactg 314

                                                                       
Query: 330 aagtttctggctcctcc-catttgctgatcttggtgccgattctttggatacggatgaga 388
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 315 aagtttctggctcctccacatttgctgatcttggtgccgattctttggatacggttgaga 374

            
Query: 389 t 389
           |
Sbjct: 375 t 375



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gctgccgctgtgttgtcccgtt 37
          ||||||||||||||||||||||
Sbjct: 1  gctgccgctgtgttgtcccgtt 22
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>ref|XM_483668.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 724

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 238 gagattttctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgt 297
           ||||||| ||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct: 176 gagatttgctgtttgctgtgccgcaaaaaaggagacagtggagaaggtttgtgacattgt 235

                
Query: 298 gaaga 302
            ||||
Sbjct: 236 taaga 240



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 131 tccgccgtctccttcgccaggcccgtcaaggca 163
           |||||| ||||||||||||  ||||||||||||
Sbjct: 69  tccgccctctccttcgccacccccgtcaaggca 101
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>dbj|D10420.1|RICKN33 Oryza sativa mRNA for acyl carrier protein (KN33 gene), partial
           sequence
          Length = 284

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 238 gagattttctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgt 297
           ||||||| ||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct: 129 gagatttgctgtttgctgtgccgcaaaaaaggagacagtggagaaggtttgtgacattgt 188

                
Query: 298 gaaga 302
            ||||
Sbjct: 189 taaga 193



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 131 tccgccgtctccttcgccaggcccgtcaaggca 163
           |||||| ||||||||||||  ||||||||||||
Sbjct: 22  tccgccctctccttcgccacccccgtcaaggca 54
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>dbj|AK120938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037A21, full
           insert sequence
          Length = 724

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 238 gagattttctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgt 297
           ||||||| ||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct: 176 gagatttgctgtttgctgtgccgcaaaaaaggagacagtggagaaggtttgtgacattgt 235

                
Query: 298 gaaga 302
            ||||
Sbjct: 236 taaga 240



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 131 tccgccgtctccttcgccaggcccgtcaaggca 163
           |||||| ||||||||||||  ||||||||||||
Sbjct: 69  tccgccctctccttcgccacccccgtcaaggca 101
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>gb|AF457946.1| Zea mays clone cho1c.pk002.m24, mRNA sequence
          Length = 381

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 113/137 (82%), Gaps = 1/137 (0%)
 Strand = Plus / Plus

                                                                       
Query: 138 tctccttcgccaggcccgtcaaggcaatctgtgtcaactcggtctccttctctgctctaa 197
           ||||||| || |||||||||||||||||| |  | || || ||||| ||||||| |||||
Sbjct: 92  tctcctttgcgaggcccgtcaaggcaatcagcattaagtctgtctctttctctggtctaa 151

                                                                       
Query: 198 ggaaagacaatgtatccttccgtttgcagcc-agttccccagagattttctgtttgctgt 256
           |||| || |||||| ||||||| |||||||| ||| || || |||||  |||| ||||||
Sbjct: 152 ggaaggataatgtagccttccgcttgcagccaagtgccacaaagattcgctgtctgctgt 211

                            
Query: 257 gcagccaaaaaggagac 273
            | || |||||||||||
Sbjct: 212 cctgctaaaaaggagac 228
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>gb|BT016215.1| Zea mays clone Contig48 mRNA sequence
          Length = 766

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 131 tccgccgtctccttcgccaggcccgtcaaggcaatc 166
           |||||| |||||||||||||||||||||||||||||
Sbjct: 144 tccgccctctccttcgccaggcccgtcaaggcaatc 179



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 tctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgtgaagagc 304
           ||||||| ||| || ||||| ||||| |||  ||| ||||||||||| ||||||||||  
Sbjct: 255 tctgtttcctgcgctgccaagaaggatacaacagacaaggtttgtgagattgtgaagaag 314

                   
Query: 305 cagcttgc 312
           ||||||||
Sbjct: 315 cagcttgc 322
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 260      gccaaaaaggagacagtagagaaggtttgtgatattgtgaagagccagcttg 311
                ||||||||||| ||||| |||||||||||||||||||| ||||  |||||||
Sbjct: 20953743 gccaaaaaggaaacagtggagaaggtttgtgatattgtaaagaagcagcttg 20953692



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 132      ccgccgtctccttcgccaggcccg 155
                ||||||||||| ||||||||||||
Sbjct: 17335535 ccgccgtctccgtcgccaggcccg 17335558
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>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 260   gccaaaaaggagacagtagagaaggtttgtgatattgtgaagagccagcttg 311
             ||||||||||| ||||| |||||||||||||||||||| ||||  |||||||
Sbjct: 45832 gccaaaaaggaaacagtggagaaggtttgtgatattgtaaagaagcagcttg 45781
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>gb|AY104517.1| Zea mays PCO060888 mRNA sequence
          Length = 805

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 138 tctccttcgccaggcccgtcaaggcaatc 166
           |||||||||||||||||||||||||||||
Sbjct: 149 tctccttcgccaggcccgtcaaggcaatc 177



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 tctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgtgaagagc 304
           ||||||| ||| || ||||| ||||| |||  ||| ||||||||||| ||||||||||  
Sbjct: 253 tctgtttcctgcgctgccaagaaggatacaacagacaaggtttgtgagattgtgaagaag 312

                   
Query: 305 cagcttgc 312
           ||||||||
Sbjct: 313 cagcttgc 320
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>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene
             region
          Length = 65993

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 263   aaaaaggagacagtagagaaggtttgtgatattgtgaaga 302
             |||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 64702 aaaaaggagacagtggagaaggtttgtgacattgttaaga 64663
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 263      aaaaaggagacagtagagaaggtttgtgatattgtgaaga 302
                |||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 27559663 aaaaaggagacagtggagaaggtttgtgacattgttaaga 27559624
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>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1479_B11
          Length = 105702

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 263   aaaaaggagacagtagagaaggtttgtgatattgtgaaga 302
             |||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 41953 aaaaaggagacagtggagaaggtttgtgacattgttaaga 41914
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>gb|BT019098.1| Zea mays clone Contig697.F mRNA sequence
          Length = 702

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                       
Query: 245 tctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgtgaagagc 304
           ||||||| ||| || ||||| ||||| || || || ||||||||||| ||||||||||  
Sbjct: 467 tctgtttcctgcgctgccaagaaggatacggtggacaaggtttgtgaaattgtgaagaag 408

                                          
Query: 305 cagcttgcgctgtctgatgacactgaagttt 335
           |||||||| ||  ||||  ||||||||||||
Sbjct: 407 cagcttgctcttcctgaccacactgaagttt 377



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 138 tctccttcgccaggcccgtcaaggcaatc 166
           |||||||||||| ||| ||||||||||||
Sbjct: 571 tctccttcgccatgcctgtcaaggcaatc 543
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>gb|AY104707.1| Zea mays PCO060889 mRNA sequence
          Length = 777

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                       
Query: 245 tctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgtgaagagc 304
           ||||||| ||| || ||||| ||||| || || || ||||||||||| ||||||||||  
Sbjct: 236 tctgtttcctgcgctgccaagaaggatacggtggacaaggtttgtgaaattgtgaagaag 295

                                          
Query: 305 cagcttgcgctgtctgatgacactgaagttt 335
           |||||||| ||  ||||  ||||||||||||
Sbjct: 296 cagcttgctcttcctgaccacactgaagttt 326



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 138 tctccttcgccaggcccgtcaaggcaatc 166
           |||||||||||| ||| ||||||||||||
Sbjct: 132 tctccttcgccatgcctgtcaaggcaatc 160
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>gb|M24426.1|BLYACPIII Barley acyl carrier protein III (ACP III) mRNA, complete cds
          Length = 520

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 238 gagattttctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgt 297
           ||||||| ||||||||||  |||| ||  |||| ||||| |||||||||||||| |||||
Sbjct: 61  gagatttgctgtttgctgctcagcaaagcaggatacagtggagaaggtttgtgaaattgt 120

                          
Query: 298 gaagagccagcttgc 312
            ||||  ||||||||
Sbjct: 121 taagaagcagcttgc 135
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>emb|X57956.1|ZMACPAA Z.mays acp mRNA for acyl carrier protein
          Length = 492

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 tctgtttgctgtgcagccaaaaaggagacagtagagaaggtttgtgatattgtgaagagc 304
           ||||||| ||| || ||||| ||||| |||  ||| ||||||||||| ||||||||||  
Sbjct: 118 tctgtttcctgcgctgccaagaaggatacaacagacaaggtttgtgagattgtgaagaag 177

                   
Query: 305 cagcttgc 312
           ||||||||
Sbjct: 178 cagcttgc 185
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>gb|M58754.1|BLYACL3 Hordeum vulgare acyl carrier protein III (Acl3) gene, complete cds
          Length = 4830

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 134  gccgtctccttcgccaggcccgtcaagg 161
            |||||||||||||||| |||||||||||
Sbjct: 1606 gccgtctccttcgccaagcccgtcaagg 1633



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 267  aggagacagtagagaaggtttgtgatattgtgaagagccagcttgc 312
            |||| ||||| |||||||||||||| ||||| ||||  ||||||||
Sbjct: 3561 aggatacagtggagaaggtttgtgaaattgttaagaagcagcttgc 3606
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>gb|AC087359.13| Homo sapiens chromosome 8, clone RP11-446H10, complete sequence
          Length = 182167

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 91     ctccccctgtcccgtctcccccatggcctcc 121
              |||||||| |||||||||||||| |||||||
Sbjct: 120755 ctccccctctcccgtctcccccacggcctcc 120785
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>ref|XM_517647.1| PREDICTED: Pan troglodytes similar to KIAA0878 protein (LOC461743),
           mRNA
          Length = 3374

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 4   cctcctgctgccgctgccgctg 25
           ||||||||||||||||||||||
Sbjct: 358 cctcctgctgccgctgccgctg 337
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>gb|BC047884.1| Homo sapiens Rho-related BTB domain containing 3, mRNA (cDNA clone
           IMAGE:5724018), with apparent retained intron
          Length = 1468

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 4   cctcctgctgccgctgccgctg 25
           ||||||||||||||||||||||
Sbjct: 199 cctcctgctgccgctgccgctg 178
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>gb|BC020231.1| Homo sapiens Rho-related BTB domain containing 3, mRNA (cDNA clone
           IMAGE:4905926), containing frame-shift errors
          Length = 1146

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 4   cctcctgctgccgctgccgctg 25
           ||||||||||||||||||||||
Sbjct: 168 cctcctgctgccgctgccgctg 147
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>gb|BC013169.1| Homo sapiens Rho-related BTB domain containing 3, mRNA (cDNA
          clone IMAGE:3919018), with apparent retained intron
          Length = 997

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 4  cctcctgctgccgctgccgctg 25
          ||||||||||||||||||||||
Sbjct: 23 cctcctgctgccgctgccgctg 2
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>emb|CR596551.1| full-length cDNA clone CS0DA010YB13 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1316

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 4   cctcctgctgccgctgccgctg 25
           ||||||||||||||||||||||
Sbjct: 170 cctcctgctgccgctgccgctg 149
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>gb|AC008840.5| Homo sapiens chromosome 5 clone CTD-2154I11, complete sequence
          Length = 126746

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 4     cctcctgctgccgctgccgctg 25
             ||||||||||||||||||||||
Sbjct: 50481 cctcctgctgccgctgccgctg 50502
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 260      gccaaaaaggagacagtagaga 281
                ||||||||||||||||||||||
Sbjct: 32411686 gccaaaaaggagacagtagaga 32411665



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 132      ccgccgtctccttcgccaggcccg 155
                ||||||||||| ||||||||||||
Sbjct: 25715011 ccgccgtctccgtcgccaggcccg 25714988
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>gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3, complete sequence
          Length = 160770

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 4     cctcctgctgccgctgccgctg 25
             ||||||||||||||||||||||
Sbjct: 84251 cctcctgctgccgctgccgctg 84230
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1143G03
          Length = 137770

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 260   gccaaaaaggagacagtagaga 281
             ||||||||||||||||||||||
Sbjct: 91183 gccaaaaaggagacagtagaga 91162
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    tccgccgcggcgtccgccgtc 139
              |||||||||||||||||||||
Sbjct: 807075 tccgccgcggcgtccgccgtc 807055
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>ref|NM_001032750.1| Takifugu rubripes coagulation factor VIII precursor (F8), mRNA
          Length = 4929

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 5  ctcctgctgccgctgccgctg 25
          |||||||||||||||||||||
Sbjct: 16 ctcctgctgccgctgccgctg 36
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>ref|XM_888675.2| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like),
           transcript variant 2 (Arid1b), mRNA
          Length = 11205

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ctcctgctgccgctgccgctg 25
           |||||||||||||||||||||
Sbjct: 874 ctcctgctgccgctgccgctg 854
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>ref|XM_139711.8| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like),
           transcript variant 1 (Arid1b), mRNA
          Length = 11325

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ctcctgctgccgctgccgctg 25
           |||||||||||||||||||||
Sbjct: 874 ctcctgctgccgctgccgctg 854
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>ref|XM_973595.1| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like)
            (Arid1b), mRNA
          Length = 11836

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    ctcctgctgccgctgccgctg 25
            |||||||||||||||||||||
Sbjct: 1345 ctcctgctgccgctgccgctg 1325
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>ref|XM_983766.1| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like)
            (Arid1b), mRNA
          Length = 11501

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    ctcctgctgccgctgccgctg 25
            |||||||||||||||||||||
Sbjct: 1011 ctcctgctgccgctgccgctg 991
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>gb|AC126929.3| Mus musculus BAC clone RP24-465A20 from chromosome 17, complete
             sequence
          Length = 168712

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     ctcctgctgccgctgccgctg 25
             |||||||||||||||||||||
Sbjct: 28514 ctcctgctgccgctgccgctg 28494
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>emb|BX088700.1|CNS09S4S DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11,
              DP09G08, DP35C12 of chromosome 5  of Podospora anserina
          Length = 322194

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 8      ctgctgccgctgccgctgtgttgtc 32
              ||||||||||||||||||| |||||
Sbjct: 274417 ctgctgccgctgccgctgtcttgtc 274393
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    cccatggcctccgccgcggcg 130
              |||||||||||||||||||||
Sbjct: 104717 cccatggcctccgccgcggcg 104697
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>emb|AL591143.11| Mouse DNA sequence from clone RP23-210L24 on chromosome 11 Contains the
             5' end of the Abr gene for active BCR-related protein, a
             ribosomal protein L18 (Rpl18) pseudogene, a ribosomal
             protein L36 (Rpl36) pseudogene and four CpG islands,
             complete sequence
          Length = 212940

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     ctgctgccgctgccgctgtgt 28
             |||||||||||||||||||||
Sbjct: 50294 ctgctgccgctgccgctgtgt 50274
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>dbj|AK153615.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630021H07 product:active BCR-related
            gene, full insert sequence
          Length = 2430

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 8    ctgctgccgctgccgctgtgt 28
            |||||||||||||||||||||
Sbjct: 1005 ctgctgccgctgccgctgtgt 1025
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>dbj|AK052216.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330009I23 product:active BCR-related
           gene, full insert sequence
          Length = 2394

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 8   ctgctgccgctgccgctgtgt 28
           |||||||||||||||||||||
Sbjct: 554 ctgctgccgctgccgctgtgt 574
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>dbj|AK044797.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130001P19
           product:unclassifiable, full insert sequence
          Length = 2009

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 8   ctgctgccgctgccgctgtgt 28
           |||||||||||||||||||||
Sbjct: 533 ctgctgccgctgccgctgtgt 553
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>gb|AY946348.1| Chlamydomonas reinhardtii low photochemical bleaching 1 protein
            (LPB1) gene, complete cds
          Length = 8595

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 120  ccgccgcggcgtccgccgtctccttcgcc 148
            |||||||||||||||||| |||| |||||
Sbjct: 2571 ccgccgcggcgtccgccgcctccgtcgcc 2599
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>gb|AF465279.1| Takifugu rubripes coagulation factor VIII precursor (F8) mRNA,
          complete cds
          Length = 4929

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 5  ctcctgctgccgctgccgctg 25
          |||||||||||||||||||||
Sbjct: 16 ctcctgctgccgctgccgctg 36
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>gb|AC164651.3| Ornithorhynchus anatinus BAC clone OABb-375A1 from chromosome
            unknown, complete sequence
          Length = 183178

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    cctgctgccgctgccgctgtg 27
            |||||||||||||||||||||
Sbjct: 7672 cctgctgccgctgccgctgtg 7692
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>emb|AL627322.1|CNS07TIW DNA centromeric region sequence from BAC DP35C12 of chromosome 5 of
             Podospora anserina
          Length = 101256

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 8     ctgctgccgctgccgctgtgttgtc 32
             ||||||||||||||||||| |||||
Sbjct: 47778 ctgctgccgctgccgctgtcttgtc 47802
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>ref|XM_957438.1| Neurospora crassa OR74A hypothetical protein (NCU08318.1) partial
           mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  ctgccgctgccgctgtgttg 30
           ||||||||||||||||||||
Sbjct: 683 ctgccgctgccgctgtgttg 702
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>ref|XM_329023.1| Neurospora crassa OR74A hypothetical protein (NCU08318.1) partial
           mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  ctgccgctgccgctgtgttg 30
           ||||||||||||||||||||
Sbjct: 683 ctgccgctgccgctgtgttg 702
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 111     ccatggcctccgccgcggcg 130
               ||||||||||||||||||||
Sbjct: 1544135 ccatggcctccgccgcggcg 1544154
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>emb|AL138789.12| Human DNA sequence from clone RP4-694A7 on chromosome 1p31.2-32.1
             Contains the 3' end of the gene for cell cycle control
             protein SDP35 (SDP35), two novel genes and a thioredoxin
             (TXN) pseudogene, complete sequence
          Length = 96157

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   gtttctggctcctcccattt 351
             ||||||||||||||||||||
Sbjct: 11309 gtttctggctcctcccattt 11328
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>gb|AC073493.27| Homo sapiens Xp BAC RP11-631N21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 211422

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    aaaggagacagtagagaagg 284
              ||||||||||||||||||||
Sbjct: 180299 aaaggagacagtagagaagg 180318
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 4       cctcctgctgccgctgccgc 23
               ||||||||||||||||||||
Sbjct: 2557281 cctcctgctgccgctgccgc 2557300
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>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     cctgctgccgctgccgctgt 26
             ||||||||||||||||||||
Sbjct: 94661 cctgctgccgctgccgctgt 94680
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tccttcgccaggcccgtcaa 159
              ||||||||||||||||||||
Sbjct: 709260 tccttcgccaggcccgtcaa 709241
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>gb|AC073429.6| Homo sapiens BAC clone RP11-775H9 from 4, complete sequence
          Length = 114909

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    ttctctgctctaaggaaaga 204
              ||||||||||||||||||||
Sbjct: 101691 ttctctgctctaaggaaaga 101710
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 238      gagattttctgtttgctgtg 257
                ||||||||||||||||||||
Sbjct: 21424097 gagattttctgtttgctgtg 21424116
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 115     ggcctccgccgcggcgtccg 134
               ||||||||||||||||||||
Sbjct: 4305554 ggcctccgccgcggcgtccg 4305535
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 116    gcctccgccgcggcgtccgccgtctcct 143
              ||||||||||||||| ||||| ||||||
Sbjct: 720024 gcctccgccgcggcggccgccatctcct 719997
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   ccgccgtctccttcgccaggcccg 155
             ||||||||||| ||||||||||||
Sbjct: 17475 ccgccgtctccgtcgccaggcccg 17452
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>dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1045B05
          Length = 140992

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    ccgccgtctccttcgccaggcccg 155
              ||||||||||| ||||||||||||
Sbjct: 122407 ccgccgtctccgtcgccaggcccg 122430
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054F02
          Length = 180651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   ccgccgtctccttcgccaggcccg 155
             ||||||||||| ||||||||||||
Sbjct: 59448 ccgccgtctccgtcgccaggcccg 59471
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>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1729_E01
          Length = 155527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   gagattttctgtttgctgtg 257
             ||||||||||||||||||||
Sbjct: 68153 gagattttctgtttgctgtg 68172
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>dbj|AK121642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055N21, full
           insert sequence
          Length = 2246

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 cctccgccgcggcgtccgcc 136
           ||||||||||||||||||||
Sbjct: 88  cctccgccgcggcgtccgcc 107
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>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence
          Length = 405672

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tcctgctgccgctgccgctg 25
              ||||||||||||||||||||
Sbjct: 248730 tcctgctgccgctgccgctg 248711
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>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence
          Length = 323584

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tcctgctgccgctgccgctg 25
              ||||||||||||||||||||
Sbjct: 252211 tcctgctgccgctgccgctg 252192
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>dbj|AP006114.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT43M15, TM0198a,
             complete sequence
          Length = 75051

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tccgccgtctccttcgccag 150
             ||||||||||||||||||||
Sbjct: 29300 tccgccgtctccttcgccag 29319
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>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete
             sequence
          Length = 160626

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   agagattttctgtttgctgt 256
             ||||||||||||||||||||
Sbjct: 51203 agagattttctgtttgctgt 51222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,178,886
Number of Sequences: 3902068
Number of extensions: 3178886
Number of successful extensions: 78471
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77897
Number of HSP's gapped (non-prelim): 573
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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