>gb|BT019246.1| Zea mays clone Contig919.F mRNA sequence
          Length = 1035

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 95   ccatggtgaagctagcgacggcgcgggactgccgcgcgtacagcctcggcgc 146
            ||||||||||||| ||||||||||| || |||||||| ||||||||||||||
Sbjct: 1008 ccatggtgaagctggcgacggcgcgcgagtgccgcgcatacagcctcggcgc 957



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 175 cggtgggagtacatcaacgccggggtgtacgtctt 209
           |||||||||||||||||||||||||||||| ||||
Sbjct: 925 cggtgggagtacatcaacgccggggtgtacatctt 891

>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05,
             complete sequence
          Length = 108479

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 172   cggcggtgggagtacatcaacgccggggtgtacgtcttcgc 212
             |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 18041 cggcggtgggagtacatcaacgccggggcgtacgtgttcgc 18081

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                         
Query: 172      cggcggtgggagtacatcaacgccggggtgtacgtcttcgc 212
                |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 29007986 cggcggtgggagtacatcaacgccggggcgtacgtgttcgc 29008026

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                    
Query: 176     ggtgggagtacatcaacgccggggtgtacgtcttcgc 212
               |||||||||||||||||||||||| ||||||||||||
Sbjct: 8870493 ggtgggagtacatcaacgccggggcgtacgtcttcgc 8870457



 Score = 46.1 bits (23), Expect = 0.044
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 97      atggtgaagctagcgacggcgcgggactgccgcgcgtac 135
               ||||||||||| ||||||||| |||| ||||| ||||||
Sbjct: 8870566 atggtgaagctggcgacggcgagggagtgccgggcgtac 8870528

>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 176   ggtgggagtacatcaacgccggggtgtacgtcttcgc 212
             |||||||||||||||||||||||| ||||||||||||
Sbjct: 75511 ggtgggagtacatcaacgccggggcgtacgtcttcgc 75475



 Score = 46.1 bits (23), Expect = 0.044
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 97    atggtgaagctagcgacggcgcgggactgccgcgcgtac 135
             ||||||||||| ||||||||| |||| ||||| ||||||
Sbjct: 75584 atggtgaagctggcgacggcgagggagtgccgggcgtac 75546

>dbj|AK103494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130P11, full
           insert sequence
          Length = 1159

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 176 ggtgggagtacatcaacgccggggtgtacgtcttcgc 212
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 127 ggtgggagtacatcaacgccggggcgtacgtcttcgc 163



 Score = 46.1 bits (23), Expect = 0.044
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 97  atggtgaagctagcgacggcgcgggactgccgcgcgtac 135
           ||||||||||| ||||||||| |||| ||||| ||||||
Sbjct: 54  atggtgaagctggcgacggcgagggagtgccgggcgtac 92

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 137     gcctcggcgcggccggcggcgagacg 162
               |||||||||||| |||||||||||||
Sbjct: 2722036 gcctcggcgcggtcggcggcgagacg 2722061

>gb|AE004970.1| Halobacterium sp. NRC-1 section 1 of 170 of the complete genome
          Length = 12825

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 180  ggagtacatcaacgccggggtgtacg 205
            |||||||||||||||||| |||||||
Sbjct: 8150 ggagtacatcaacgccggcgtgtacg 8125

>gb|DQ013294.1| Polyangium cellulosum strain So ce12 disorazole biosynthesis gene
             cluster, complete sequence
          Length = 84868

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 144   cgcggccggcggcgagacgtcgcgc 168
             |||||||||||||| ||||||||||
Sbjct: 59656 cgcggccggcggcgcgacgtcgcgc 59632

>gb|DQ337730.1| Uncultured bacterium clone Bsedi_nirK-10 NirK (nirK) gene, partial
           cds
          Length = 473

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 4   ccagatcgccgtgtccgccga 24
           |||||||||||||||||||||
Sbjct: 331 ccagatcgccgtgtccgccga 311

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 138     cctcggcgcggccggcggcgagacg 162
               ||||||||||||||||| |||||||
Sbjct: 3983045 cctcggcgcggccggcgtcgagacg 3983069

>gb|AF079139.1|AF079139 Streptomyces venezuelae pikCD operon, complete sequence
          Length = 4342

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 138  cctcggcgcggccggcggcga 158
            |||||||||||||||||||||
Sbjct: 2245 cctcggcgcggccggcggcga 2265

>emb|AJ874112.1| Polyangium cellulosum disA gene, disB gene, disC gene, disD gene, ORF1,
             ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10,
             ORF11, ORF12, ORF13, ORF14, ORF15, ORF16, ORF17, ORF18 and
             ORF19
          Length = 86080

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 144   cgcggccggcggcgagacgtcgcgc 168
             |||||||||||||| ||||||||||
Sbjct: 59574 cgcggccggcggcgcgacgtcgcgc 59550

>ref|NM_197572.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0064P21.6), mRNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 cggccggcggcgagacgtcg 165
           ||||||||||||||||||||
Sbjct: 209 cggccggcggcgagacgtcg 228

>ref|NM_192227.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 915

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 gcgcgtacagcctcggcgcg 147
           ||||||||||||||||||||
Sbjct: 547 gcgcgtacagcctcggcgcg 528

>gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complete sequence
          Length = 56458

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   cctcggcgcggccggcggcg 157
             ||||||||||||||||||||
Sbjct: 46085 cctcggcgcggccggcggcg 46104

>gb|AY195830.1| Uncultured bacterium clone M305044 NirK (nirK) gene, partial cds
          Length = 306

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   atcgccgtgtccgccgacca 27
           ||||||||||||||||||||
Sbjct: 303 atcgccgtgtccgccgacca 284

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     gcctcggcgcggccggcggc 156
               ||||||||||||||||||||
Sbjct: 1953142 gcctcggcgcggccggcggc 1953161

>gb|AY179964.1| Stenotrophomonas maltophilia phosphoglucomutase (spgM) gene,
           complete cds
          Length = 1983

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 cctcggcgcggccggcggcg 157
           ||||||||||||||||||||
Sbjct: 840 cctcggcgcggccggcggcg 859

>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     cttcaactcctccaccgcag 50
              ||||||||||||||||||||
Sbjct: 492881 cttcaactcctccaccgcag 492862

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 135     cagcctcggcgcggccggcg 154
               ||||||||||||||||||||
Sbjct: 1543623 cagcctcggcgcggccggcg 1543604

>gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence, complete
             sequence
          Length = 142114

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   cggccggcggcgagacgtcg 165
             ||||||||||||||||||||
Sbjct: 22601 cggccggcggcgagacgtcg 22620

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 146      cggccggcggcgagacgtcg 165
                ||||||||||||||||||||
Sbjct: 20517311 cggccggcggcgagacgtcg 20517330

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 128      gcgcgtacagcctcggcgcg 147
                ||||||||||||||||||||
Sbjct: 29146637 gcgcgtacagcctcggcgcg 29146618

>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0421H07
          Length = 158126

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    gcgcgtacagcctcggcgcg 147
              ||||||||||||||||||||
Sbjct: 107003 gcgcgtacagcctcggcgcg 106984

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    cctcggcgcggccggcggcg 157
              ||||||||||||||||||||
Sbjct: 191508 cctcggcgcggccggcggcg 191489

>dbj|AK120628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153C17, full
           insert sequence
          Length = 2784

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 cggccggcggcgagacgtcg 165
           ||||||||||||||||||||
Sbjct: 246 cggccggcggcgagacgtcg 265

>dbj|AK099917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116I02, full
           insert sequence
          Length = 1430

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 gcgcgtacagcctcggcgcg 147
           ||||||||||||||||||||
Sbjct: 578 gcgcgtacagcctcggcgcg 559

>dbj|AK069643.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027O19, full
           insert sequence
          Length = 1452

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 gcgcgtacagcctcggcgcg 147
           ||||||||||||||||||||
Sbjct: 75  gcgcgtacagcctcggcgcg 56

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 188     tcaacgccggggtgtacgtcttcg 211
               |||||||||||||||||| |||||
Sbjct: 1022402 tcaacgccggggtgtacgccttcg 1022379

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 146      cggccggcggcgagacgtcg 165
                ||||||||||||||||||||
Sbjct: 20528583 cggccggcggcgagacgtcg 20528602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,361,617
Number of Sequences: 3902068
Number of extensions: 1361617
Number of successful extensions: 107631
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105240
Number of HSP's gapped (non-prelim): 2391
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)