>U139_ARATH (Q9SD88) UPF0139 protein At5g07960|
          Length = 107

 Score = 97.8 bits (242), Expect = 6e-21
 Identities = 44/74 (59%), Positives = 52/74 (70%)
 Frame = +1

Query: 124 NDPRQPTTARPYAPPKLSSQDLPVDYXXXXXXXXXXXXXMLHYKACSWIAIIFCAQSLAN 303
           NDPRQP+ A+PY P  ++ +DLPVDY             M  YK CSW+AIIFCAQSLAN
Sbjct: 12  NDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLAN 71

Query: 304 MKNFENDLKQLSMA 345
           M+N ENDLKQ+SMA
Sbjct: 72  MRNLENDLKQISMA 85

>U139_MANSE (Q9U516) UPF0139 protein pMsmaA27|
          Length = 108

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +1

Query: 124 NDPRQPTTARPYAPPKLSS---QDLPVDYXXXXXXXXXXXXXMLHYKACSWIAIIFCAQS 294
           +DPR+    R Y PP  ++   +DL  DY             M+  K C+W A+   + S
Sbjct: 5   SDPRRADRERRYKPPPSTTAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSIS 64

Query: 295 LANMKNFENDLKQLSMAF 348
            AN +   +D KQ+  +F
Sbjct: 65  FANSR-VSDDTKQIVSSF 81

>CG140_MOUSE (Q6ZWX0) UPF0139 protein CGI-140 homolog|
          Length = 106

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 124 NDPRQPTTARPYAPP----KLSSQDLPVDYXXXXXXXXXXXXXMLHYKACSWIAIIFCAQ 291
           +DPR+P     Y PP      +  D   DY             ML  K C+W+A+     
Sbjct: 7   SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66

Query: 292 SLANMKNFENDLKQLSMAF 348
           S AN ++ E D KQ+  +F
Sbjct: 67  SFANSRSSE-DTKQMMSSF 84

>CG140_HUMAN (Q9Y284) UPF0139 protein CGI-140|
          Length = 106

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 124 NDPRQPTTARPYAPP----KLSSQDLPVDYXXXXXXXXXXXXXMLHYKACSWIAIIFCAQ 291
           +DPR+P     Y PP      +  D   DY             ML  K C+W+A+     
Sbjct: 7   SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66

Query: 292 SLANMKNFENDLKQLSMAF 348
           S AN ++ E D KQ+  +F
Sbjct: 67  SFANSRSSE-DTKQMMSSF 84

>CG140_PIG (Q6Q7K0) UPF0139 protein CGI-140 homolog|
          Length = 106

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +1

Query: 124 NDPRQPTTARPYAPP----KLSSQDLPVDYXXXXXXXXXXXXXMLHYKACSWIAIIFCAQ 291
           +DPR P     Y PP      +  D   DY             ML  K C+W+A+     
Sbjct: 7   SDPRSPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66

Query: 292 SLANMKNFENDLKQLSMAF 348
           S AN ++ E D KQ+  +F
Sbjct: 67  SFANSRSSE-DTKQMMSSF 84

>U139_DROME (Q9VRJ8) UPF0139 protein CG10674|
          Length = 108

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
 Frame = +1

Query: 127 DPRQPTTARPYAPPKLSSQ------DLPVDYXXXXXXXXXXXXXMLHYKACSWIAIIFCA 288
           DPR+      Y  PK   Q      D+  DY             M+  K C+W A+    
Sbjct: 6   DPRRKEKINRYKAPKNQGQSGGANEDMMPDYMNILGMIFSMCGLMMKLKWCAWFALYCSC 65

Query: 289 QSLANMKNFENDLKQLSMAF 348
            S A+ +   +D KQ+  +F
Sbjct: 66  ISFASSR-ASDDAKQVLSSF 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,559,220
Number of Sequences: 219361
Number of extensions: 171275
Number of successful extensions: 480
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)