ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast14g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466493.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
3dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
4dbj|AK070526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
5gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 4.1
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.1
7ref|XR_003085.1| PREDICTED: Mus musculus similar to cytochrome P... 40 4.1
8ref|XR_004631.1| PREDICTED: Mus musculus similar to cytochrome P... 40 4.1
9ref|XR_001834.1| PREDICTED: Mus musculus similar to cytochrome P... 40 4.1
10ref|XM_783203.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.1
11gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
13dbj|AK069718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
14emb|AL831740.9| Mouse DNA sequence from clone RP23-395P16 on chr... 40 4.1
15emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & C... 40 4.1
16emb|AL645473.12| Mouse DNA sequence from clone RP23-246H17 on ch... 40 4.1
17emb|AL731651.1| Mouse DNA sequence from clone XX-PAC129 on chrom... 40 4.1 
>ref|XM_466493.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1271

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 263 aaaggggtatgtgtttcacctggcggacggttccctgctttctcatc 309
           ||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 215 aaaggtgtatgtgtttcgcctggtggacgattccctgccttctcatc 261
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 263      aaaggggtatgtgtttcacctggcggacggttccctgctttctcatc 309
                ||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 22952106 aaaggtgtatgtgtttcgcctggtggacgattccctgccttctcatc 22952060
to top
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 263   aaaggggtatgtgtttcacctggcggacggttccctgctttctcatc 309
             ||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 71908 aaaggtgtatgtgtttcgcctggtggacgattccctgccttctcatc 71862
to top
>dbj|AK070526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060F11, full
           insert sequence
          Length = 1271

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 263 aaaggggtatgtgtttcacctggcggacggttccctgctttctcatc 309
           ||||| ||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 215 aaaggtgtatgtgtttcgcctggtggacgattccctgccttctcatc 261
to top
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV,
              complete sequence
          Length = 202301

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    agcctgcttctgctgctcttcttc 235
              ||||||||||||||||||| ||||
Sbjct: 139028 agcctgcttctgctgctctacttc 139005
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     tctgctgctcttcttctcgc 239
               ||||||||||||||||||||
Sbjct: 2132062 tctgctgctcttcttctcgc 2132043
to top
>ref|XR_003085.1| PREDICTED: Mus musculus similar to cytochrome P450, family 4,
           subfamily a, polypeptide 10 (LOC670700), mRNA
          Length = 1697

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 gcctgcttctgctgctcttc 232
           ||||||||||||||||||||
Sbjct: 77  gcctgcttctgctgctcttc 96
to top
>ref|XR_004631.1| PREDICTED: Mus musculus similar to cytochrome P450, family 4,
           subfamily a, polypeptide 10 (LOC674260), mRNA
          Length = 1559

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 gcctgcttctgctgctcttc 232
           ||||||||||||||||||||
Sbjct: 77  gcctgcttctgctgctcttc 96
to top
>ref|XR_001834.1| PREDICTED: Mus musculus similar to cytochrome P450, family 4,
           subfamily a, polypeptide 10 (LOC547220), mRNA
          Length = 1559

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 gcctgcttctgctgctcttc 232
           ||||||||||||||||||||
Sbjct: 77  gcctgcttctgctgctcttc 96
to top
>ref|XM_783203.1| PREDICTED: Strongylocentrotus purpuratus similar to NLI interacting
           factor (33.1 kD) (1E869) (LOC583286), mRNA
          Length = 1529

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 cttctgctgctcttcttctc 237
           ||||||||||||||||||||
Sbjct: 330 cttctgctgctcttcttctc 311
to top
>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0030C11, complete sequence
          Length = 156647

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tctgctgctcttcttctcgc 239
             ||||||||||||||||||||
Sbjct: 22356 tctgctgctcttcttctcgc 22337
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     tctgctgctcttcttctcgc 239
               ||||||||||||||||||||
Sbjct: 2132074 tctgctgctcttcttctcgc 2132055
to top
>dbj|AK069718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027F09, full
           insert sequence
          Length = 3194

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 tctgctgctcttcttctcgc 239
           ||||||||||||||||||||
Sbjct: 234 tctgctgctcttcttctcgc 253
to top
>emb|AL831740.9| Mouse DNA sequence from clone RP23-395P16 on chromosome 4, complete
             sequence
          Length = 166965

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   agcctgcttctgctgctctt 231
             ||||||||||||||||||||
Sbjct: 31251 agcctgcttctgctgctctt 31232
to top
>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes
          Length = 234411

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    gcctgcttctgctgctcttc 232
              ||||||||||||||||||||
Sbjct: 160727 gcctgcttctgctgctcttc 160708
to top
>emb|AL645473.12| Mouse DNA sequence from clone RP23-246H17 on chromosome 4, complete
             sequence
          Length = 162757

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   gcctgcttctgctgctcttc 232
             ||||||||||||||||||||
Sbjct: 66309 gcctgcttctgctgctcttc 66290
to top
>emb|AL731651.1| Mouse DNA sequence from clone XX-PAC129 on chromosome 4, complete
             sequence
          Length = 147323

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   gcctgcttctgctgctcttc 232
             ||||||||||||||||||||
Sbjct: 73639 gcctgcttctgctgctcttc 73620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,734,875
Number of Sequences: 3902068
Number of extensions: 1734875
Number of successful extensions: 34625
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34523
Number of HSP's gapped (non-prelim): 102
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top