>ATPBM_MAIZE (P19023) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 553

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 32/59 (54%), Positives = 35/59 (59%)
 Frame = +2

Query: 128 GYLFNRXXXXXXXXXXXXXXXXDKLPPTSDKYVGAKITDEFTGAGSVGQVCQVIGAVVD 304
           GYLFNR                   PP + K  G KITDEFTGAG++GQVCQVIGAVVD
Sbjct: 38  GYLFNRAAAYASSAAAQAAPATP--PPATGKTGGGKITDEFTGAGAIGQVCQVIGAVVD 94

>ATPBM_ORYSA (Q01859) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 552

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 32/59 (54%), Positives = 33/59 (55%)
 Frame = +2

Query: 128 GYLFNRXXXXXXXXXXXXXXXXDKLPPTSDKYVGAKITDEFTGAGSVGQVCQVIGAVVD 304
           GYLFNR                   P T     G KITDEFTGAG+VGQVCQVIGAVVD
Sbjct: 37  GYLFNRAAAYATAAAAKEAA--PPAPATGKATGGGKITDEFTGAGAVGQVCQVIGAVVD 93

>ATPBM_NICPL (P17614) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 560

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 29/59 (49%), Positives = 32/59 (54%)
 Frame = +2

Query: 128 GYLFNRXXXXXXXXXXXXXXXXDKLPPTSDKYVGAKITDEFTGAGSVGQVCQVIGAVVD 304
           G+L NR                   PP S      KITDEFTGAGS+G+VCQVIGAVVD
Sbjct: 45  GFLLNRAVQYATSAAAPASQ--PSTPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVD 101

>ATPBM_HEVBR (P29685) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 562

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 28/59 (47%), Positives = 30/59 (50%)
 Frame = +2

Query: 128 GYLFNRXXXXXXXXXXXXXXXXDKLPPTSDKYVGAKITDEFTGAGSVGQVCQVIGAVVD 304
           GYL  R                    P   K  G KITDEFTG G++GQVCQVIGAVVD
Sbjct: 46  GYLLTRAAEYATSAAAAAPPQPPPAKPEGGKG-GGKITDEFTGKGAIGQVCQVIGAVVD 103

>ATPBM_DAUCA (P37399) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 547

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +2

Query: 236 ITDEFTGAGSVGQVCQVIGAVVD 304
           ITDE TGAG++GQVCQ+IGAVVD
Sbjct: 70  ITDEKTGAGAIGQVCQIIGAVVD 92

>ATPBN_ARATH (P83484) ATP synthase beta chain 2, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 556

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 233 KITDEFTGAGSVGQVCQVIGAVVD 304
           K T ++ G G++G+VCQVIGA+VD
Sbjct: 72  KKTYDYGGKGAIGRVCQVIGAIVD 95

>ATPBM_ARATH (P83483) ATP synthase beta chain 1, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 556

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 233 KITDEFTGAGSVGQVCQVIGAVVD 304
           K T ++ G G++G+VCQVIGA+VD
Sbjct: 72  KKTYDYGGKGAIGRVCQVIGAIVD 95

>ATPBO_ARATH (Q9C5A9) ATP synthase beta chain 3, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 559

 Score = 34.7 bits (78), Expect = 0.063
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 233 KITDEFTGAGSVGQVCQVIGAVVD 304
           K T ++ G G++G+VCQVIGA+VD
Sbjct: 75  KKTYDYGGKGAIGRVCQVIGAIVD 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,910,796
Number of Sequences: 219361
Number of extensions: 104941
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)