ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast14e11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X74545.1|TAATP2 T.aestivum atp-2 mRNA for ATP synthase beta subunit Length = 1891 Score = 206 bits (104), Expect = 3e-50 Identities = 113/116 (97%) Strand = Plus / Plus Query: 191 gccgacaagctgccccccacctccgacaagtacgtcggcgccaagatcaccgacgagttc 250 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 186 gccgagaagctgccccccacctccgacaagtacgtcggtgccaagatcaccgacgagttc 245 Query: 251 accggcgccggctccgtcggccaggtctgccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 246 accggcgccggctccatcggccaggtctgccaggtcatcggcgccgtcgtcgacgt 301 Score = 103 bits (52), Expect = 3e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 5 cgatccgcggccatggcgacgcgccgggccctctcctcgctcctccgatcggcgtcccgc 64 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 3 cgatccgcggccatggcgacgcgccgggccctctcctcgctcctccggtcggcctcccgc 62
>ref|XM_475868.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1659 Score = 123 bits (62), Expect = 3e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 208 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 267 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 268 gccgtcgtcgacgt 281 Score = 46.1 bits (23), Expect = 0.065 Identities = 32/35 (91%) Strand = Plus / Plus Query: 17 atggcgacgcgccgggccctctcctcgctcctccg 51 |||||||| ||||||||||||||||| ||| |||| Sbjct: 1 atggcgactcgccgggccctctcctccctcgtccg 35
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 123 bits (62), Expect = 3e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 167664 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 167605 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 167604 gccgtcgtcgacgt 167591 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||||| ||||||||||||||||| ||| |||| Sbjct: 167876 cggccatggcgactcgccgggccctctcctccctcgtccg 167837
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 123 bits (62), Expect = 3e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 5153 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 5094 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 5093 gccgtcgtcgacgt 5080 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||||| ||||||||||||||||| ||| |||| Sbjct: 5365 cggccatggcgactcgccgggccctctcctccctcgtccg 5326
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 123 bits (62), Expect = 3e-25 Identities = 71/74 (95%) Strand = Plus / Minus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 27292696 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 27292637 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 27292636 gccgtcgtcgacgt 27292623 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||||| ||||||||||||||||| ||| |||| Sbjct: 27292908 cggccatggcgactcgccgggccctctcctccctcgtccg 27292869
>dbj|AK071143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F24, full insert sequence Length = 1071 Score = 123 bits (62), Expect = 3e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 317 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 376 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 377 gccgtcgtcgacgt 390 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||||| ||||||||||||||||| ||| |||| Sbjct: 105 cggccatggcgactcgccgggccctctcctccctcgtccg 144
>dbj|AK061681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A03, full insert sequence Length = 1973 Score = 123 bits (62), Expect = 3e-25 Identities = 71/74 (95%) Strand = Plus / Plus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 258 aagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcatcggc 317 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 318 gccgtcgtcgacgt 331 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||||| ||||||||||||||||| ||| |||| Sbjct: 46 cggccatggcgactcgccgggccctctcctccctcgtccg 85
>gb|BT018722.1| Zea mays clone EL01N0518D08.d mRNA sequence Length = 1977 Score = 121 bits (61), Expect = 1e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 226 cggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggt 285 ||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct: 236 cggcggcaagatcaccgacgagttcaccggcgccggcgccatcggccaggtgtgccaggt 295 Query: 286 catcggcgccgtcgtcgacgt 306 |||||||||||||||||||| Sbjct: 296 gatcggcgccgtcgtcgacgt 316
>gb|AY103634.1| Zea mays PCO073309 mRNA sequence Length = 1799 Score = 121 bits (61), Expect = 1e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 226 cggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggt 285 ||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||| Sbjct: 32 cggcggcaagatcaccgacgagttcaccggcgccggcgccatcggccaggtgtgccaggt 91 Query: 286 catcggcgccgtcgtcgacgt 306 |||||||||||||||||||| Sbjct: 92 gatcggcgccgtcgtcgacgt 112
>dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA for mitochondrial F1-ATPase Length = 1929 Score = 107 bits (54), Expect = 2e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 233 aagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggc 292 |||||||||||||||||||||||||||||| || | || ||||| ||||||||||||||| Sbjct: 219 aagatcaccgacgagttcaccggcgccggcgccattgggcaggtgtgccaggtcatcggc 278 Query: 293 gccgtcgtcgacgt 306 |||||||||||||| Sbjct: 279 gccgtcgtcgacgt 292 Score = 63.9 bits (32), Expect = 3e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||||||||||||||||||||||| ||| |||| Sbjct: 10 cggccatggcgacgcgccgggccctctcctccctcgtccg 49
>gb|BT016806.1| Zea mays clone Contig639 mRNA sequence Length = 2139 Score = 103 bits (52), Expect = 3e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| ||||||||||||||||||||||||||| ||| || |||||||||| |||||||| Sbjct: 257 ggcggcaagatcaccgacgagttcaccggcgctggcgccatcggccaggtgtgccaggtg 316 Query: 287 atcggcgccgtcgtcgacgt 306 |||||||||||||| ||||| Sbjct: 317 atcggcgccgtcgttgacgt 336 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Plus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccg 51 ||||||||||| | ||||||| | |||||||||||||||| Sbjct: 48 cggccatggcgtcccgccgggtcgtctcctcgctcctccg 87
>emb|X54233.1|ZMATP2MT Maize ATP2 mRNA for mitochondrial ATP synthase beta subunit Length = 2029 Score = 103 bits (52), Expect = 3e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| ||||||||||||||||||||||||||| ||| || |||||||||| |||||||| Sbjct: 258 ggcggcaagatcaccgacgagttcaccggcgctggcgccatcggccaggtgtgccaggtg 317 Query: 287 atcggcgccgtcgtcgacgt 306 |||||||||||||| ||||| Sbjct: 318 atcggcgccgtcgttgacgt 337 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccgatcggcgtcccgc 64 ||||||||||| | ||||||| | |||||||||||||||| || ||||||||| Sbjct: 49 cggccatggcgtcccgccgggtcgtctcctcgctcctccgctccgcgtcccgc 101
>gb|M36087.1|MZEMT2BATP Zea mays mitochondrial F-1-ATPase subunit 2 mRNA, complete cds; nuclear gene for mitochondrial product Length = 2054 Score = 101 bits (51), Expect = 1e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 232 caagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcgg 291 ||||||||||||||||||||||||||| ||| || |||||||||| |||||||| ||||| Sbjct: 215 caagatcaccgacgagttcaccggcgctggcgccatcggccaggtgtgccaggtgatcgg 274 Query: 292 cgccgtcgtcgacgt 306 ||||||||| ||||| Sbjct: 275 cgccgtcgttgacgt 289 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 12 cggccatggcgacgcgccgggccctctcctcgctcctccgatcggcgtcccgc 64 ||||||||||| | ||||||| | |||||||||||||||| || ||||||||| Sbjct: 1 cggccatggcgtcccgccgggtcgtctcctcgctcctccgctccgcgtcccgc 53
>ref|NM_192090.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1668 Score = 79.8 bits (40), Expect = 5e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 217 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 276 Query: 287 atcggcgccgtcgtcgacgt 306 || ||||||||||| ||||| Sbjct: 277 attggcgccgtcgtggacgt 296 Score = 40.1 bits (20), Expect = 4.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 17 atggcgacgcgccgggccctctcctcgctcctccgatcggcgtcccgc 64 |||||||| |||||||||||| |||| ||||||| || || |||||| Sbjct: 1 atggcgacccgccgggccctcacctccgtcctccgctccgcctcccgc 48
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 5e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 28271283 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 28271342 Query: 287 atcggcgccgtcgtcgacgt 306 || ||||||||||| ||||| Sbjct: 28271343 attggcgccgtcgtggacgt 28271362 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 11 gcggccatggcgacgcgccgggccctctcctcgctcctccgatcggcgtcccgc 64 |||||||||||||| |||||||||||| |||| ||||||| || || |||||| Sbjct: 28271061 gcggccatggcgacccgccgggccctcacctccgtcctccgctccgcctcccgc 28271114
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 79.8 bits (40), Expect = 5e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 105790 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 105849 Query: 287 atcggcgccgtcgtcgacgt 306 || ||||||||||| ||||| Sbjct: 105850 attggcgccgtcgtggacgt 105869 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 11 gcggccatggcgacgcgccgggccctctcctcgctcctccgatcggcgtcccgc 64 |||||||||||||| |||||||||||| |||| ||||||| || || |||||| Sbjct: 105568 gcggccatggcgacccgccgggccctcacctccgtcctccgctccgcctcccgc 105621
>dbj|AK071414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093I16, full insert sequence Length = 1688 Score = 79.8 bits (40), Expect = 5e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 33 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 92 Query: 287 atcggcgccgtcgtcgacgt 306 || ||||||||||| ||||| Sbjct: 93 attggcgccgtcgtggacgt 112
>dbj|AK064953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A02, full insert sequence Length = 2050 Score = 79.8 bits (40), Expect = 5e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 227 ggcgccaagatcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtc 286 |||| |||||||||||| |||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 329 ggcggcaagatcaccgatgagttcacgggcgctggcgccgtcgggcaggtgtgccaggtg 388 Query: 287 atcggcgccgtcgtcgacgt 306 || ||||||||||| ||||| Sbjct: 389 attggcgccgtcgtggacgt 408 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 11 gcggccatggcgacgcgccgggccctc 37 |||||||||||||| |||||||||||| Sbjct: 106 gcggccatggcgacccgccgggccctc 132
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 266 gtcggccaggtctgccaggtcatcggcgccgtcgtcgacgt 306 |||||| ||||| |||||||||||||||| ||||||||||| Sbjct: 3246858 gtcggcaaggtccgccaggtcatcggcgcagtcgtcgacgt 3246818
>gb|U96496.1|NSU96496 Nicotiana sylvestris ATPase beta subunit (nsatp2.1.1) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1987 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 236 atcaccgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggcgcc 295 |||||||| |||||||||||||| || || |||| |||| |||||||||||||| ||| Sbjct: 240 atcaccgatgagttcaccggcgctggttcgatcgggaaggtgtgccaggtcatcggtgcc 299 Query: 296 gtcgt 300 ||||| Sbjct: 300 gtcgt 304
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 56.0 bits (28), Expect = 7e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 279 gccaggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||||||||||| Sbjct: 2569900 gccaggtcatcggcgccgtcgtcgacgt 2569927
>emb|Y15179.1|SBY15179 Sorghum bicolor F1-ATP synthase, cultivar CS3541, partial Length = 1361 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 267 tcggccaggtctgccaggtcatcggcgccgtcgtcgacgt 306 |||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 2 tcggccaggtgtgccaggtcatcggcgctgtcgtggacgt 41
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||||||||| Sbjct: 488016 ccaggtcatcggcgccgtcgtcgacgt 488042
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||||||||| Sbjct: 632599 ccaggtcatcggcgccgtcgtcgacgt 632625
>emb|X99599.1|RCATP1OPN R.capsulatus complete atp1 operon Length = 8009 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||||||||| Sbjct: 5548 ccaggtcatcggcgccgtcgtcgacgt 5574
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||||||||| Sbjct: 299329 ccaggtcatcggcgccgtcgtcgacgt 299303
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||||||||| Sbjct: 475249 ccaggtcatcggcgccgtcgtcgacgt 475223
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||||||||| Sbjct: 2412724 caggtcatcggcgccgtcgtcgacgt 2412749
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||||||||| Sbjct: 245939 caggtcatcggcgccgtcgtcgacgt 245914
>emb|X02868.1|NPATP21 Nicotiana plubaginifolia atp2-1 gene for mitochondrial ATP synthase beta subunit Length = 5351 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 239 accgacgagttcaccggcgccggctccgtcggccaggtctgccaggtcatcggcgccgtc 298 ||||| |||||||||||||| || || |||| |||| |||||||||||||| |||||| Sbjct: 630 accgatgagttcaccggcgctggttcgatcgggaaggtgtgccaggtcatcggtgccgtc 689 Query: 299 gt 300 || Sbjct: 690 gt 691
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||||||||| Sbjct: 196168 caggtcatcggcgccgtcgtcgacgt 196143
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||||||||| Sbjct: 191070 caggtcatcggcgccgtcgtcgacgt 191045
>ref|XM_654827.1| Aspergillus nidulans FGSC A4 ATP synthase subunit beta (AN2315.2), mRNA Length = 1542 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 |||||||||||| |||||||||||||| Sbjct: 141 ccaggtcatcggtgccgtcgtcgacgt 167
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 46.1 bits (23), Expect = 0.065 Identities = 23/23 (100%) Strand = Plus / Minus Query: 284 gtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||||| Sbjct: 585643 gtcatcggcgccgtcgtcgacgt 585621
>emb|Z00018.1|RBATP R.blasticus atp operon coding for the 5 subunits of F1-ATPase and 8URFs Length = 12368 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||||||| ||||| Sbjct: 9252 ccaggtcatcggcgccgtcgtggacgt 9278
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 280 ccaggtcatcggcgccgtcgtcgacgt 306 |||||| |||||||||||||||||||| Sbjct: 4102159 ccaggttatcggcgccgtcgtcgacgt 4102133
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 ||||||||||||||||| |||||||| Sbjct: 1012367 caggtcatcggcgccgttgtcgacgt 1012342
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||| ||||||||||| Sbjct: 1727792 caggtcatcggcgctgtcgtcgacgt 1727767
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 ||||| |||||||||||||||||||| Sbjct: 866190 caggttatcggcgccgtcgtcgacgt 866165
>gb|AE009468.1| Brucella melitensis 16M chromosome I, section 25 of 195 of the complete sequence Length = 11411 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||| ||||||||||| Sbjct: 263 caggtcatcggcgctgtcgtcgacgt 288
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||| ||||||||||| Sbjct: 1744708 caggtcatcggcgctgtcgtcgacgt 1744683
>gb|AF017097.1|AF017097 Paracoccus denitrificans F1-ATPase gamma-subunit (atpC) and F1-ATPase beta-subunit (atpB) genes, partial cds Length = 903 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 ||||| |||||||||||||||||||| Sbjct: 154 caggtgatcggcgccgtcgtcgacgt 179
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 ccgcggccatggcgacgcgccg 30 |||||||||||||||||||||| Sbjct: 176352 ccgcggccatggcgacgcgccg 176373
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||| ||||||||||| Sbjct: 1741865 caggtcatcggcgctgtcgtcgacgt 1741840
>dbj|D84449.1|DVUATPASE Desulfovibrio vulgaris genes for proton ATPase gamma subunit and proton ATPase beta subunit, partial cds and complete cds Length = 1665 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||| ||||| Sbjct: 201 caggtcatcggcgccgtcgtggacgt 226
>dbj|AB022018.1| Desulfovibrio vulgaris genes for F1-ATPase, complete cds Length = 5506 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 caggtcatcggcgccgtcgtcgacgt 306 |||||||||||||||||||| ||||| Sbjct: 3661 caggtcatcggcgccgtcgtggacgt 3686
>ref|XM_365465.1| Magnaporthe grisea 70-15 hypothetical protein (MG02167.4) partial mRNA Length = 1962 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 ccaagatcaccgacgagttca 251 ||||||||||||||||||||| Sbjct: 491 ccaagatcaccgacgagttca 511
>dbj|AK007308.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700128E15 product:finger protein kox11 (fragment) homolog [Homo sapiens], full insert sequence Length = 2279 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 ccgatccgcggccatggcgacgcgc 28 ||||||||||||| ||||||||||| Sbjct: 36 ccgatccgcggccctggcgacgcgc 12
>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic region, partial sequence Length = 161264 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaggtcatcggcgccgtcg 299 |||||||||||||||||||| Sbjct: 54604 ccaggtcatcggcgccgtcg 54623
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 ttcaccggcgccggctccgtcggc 271 ||||||||||||| |||||||||| Sbjct: 2403184 ttcaccggcgccgtctccgtcggc 2403207
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 agatcaccgacgagttcaccggcgccgg 261 |||||| |||||||| |||||||||||| Sbjct: 217222 agatcatcgacgagtacaccggcgccgg 217249
>emb|AJ507836.1|ANI507836 Arthrobacter nicotinovorans pAO1 plasmid sequence Length = 165137 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ggtcatcggcgccgtcgtcg 302 |||||||||||||||||||| Sbjct: 20282 ggtcatcggcgccgtcgtcg 20301
>gb|AE006004.1| Caulobacter crescentus CB15 section 330 of 359 of the complete genome Length = 14710 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 ccaggtcatcggcgccgtcgtcga 303 |||| ||||||||||||||||||| Sbjct: 2945 ccagatcatcggcgccgtcgtcga 2922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ccggcgccggctccgtcggccagg 275 ||||||||||| |||||||||||| Sbjct: 23058777 ccggcgccggcgccgtcggccagg 23058800
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 279 gccaggtcatcggcgccgtcgtcgacgt 306 ||||||||||||| || ||||||||||| Sbjct: 1789979 gccaggtcatcggagcagtcgtcgacgt 1790006
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tccgtcggccaggtctgccaggtc 286 |||| ||||||||||||||||||| Sbjct: 2797876 tccggcggccaggtctgccaggtc 2797899
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ccggcgccggctccgtcggccagg 275 ||||||||||| |||||||||||| Sbjct: 133991 ccggcgccggcgccgtcggccagg 134014
>gb|AE005071.1| Halobacterium sp. NRC-1 section 102 of 170 of the complete genome Length = 10826 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 gagttcaccggcgccggctccgtc 268 ||||||||||||| |||||||||| Sbjct: 9205 gagttcaccggcggcggctccgtc 9182
>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1699_E05 Length = 170666 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ccggcgccggctccgtcggccagg 275 ||||||||||| |||||||||||| Sbjct: 2961 ccggcgccggcgccgtcggccagg 2984
>dbj|AK108612.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A11, full insert sequence Length = 1582 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ccggcgccggctccgtcggccagg 275 ||||||||||| |||||||||||| Sbjct: 186 ccggcgccggcgccgtcggccagg 209
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cgacgagttcaccggcgccg 260 |||||||||||||||||||| Sbjct: 4593856 cgacgagttcaccggcgccg 4593875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,060,207 Number of Sequences: 3902068 Number of extensions: 1060207 Number of successful extensions: 27300 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25994 Number of HSP's gapped (non-prelim): 1306 length of query: 306 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 284 effective length of database: 17,147,199,772 effective search space: 4869804735248 effective search space used: 4869804735248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
