>ECM27_YEAST (P47144) Extracellular matrix protein 27|
          Length = 725

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 125 FIHLLLPPSLHCSISSSCPTKHLDRLAAAFPLVL 226
           FI  +  P L CSI S   T HL  L   FPL+L
Sbjct: 445 FIQSITAPFLLCSILSVLLTYHLGYLVYLFPLIL 478

>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)|
            (Strand-exchange protein 1 homolog) (Protein Dhm2)
          Length = 1719

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 180  QPSTSIVSPLPSLLCCRGAPDGR*GGRLH 266
            Q  T+IV P PS+  C  AP G  GG  H
Sbjct: 1183 QKLTAIVKPQPSVSHCSAAPSGHLGGLNH 1211

>CEF1_ASHGO (Q756C3) Pre-mRNA-splicing factor CEF1|
          Length = 477

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 276 PGHHEADRLSDHLARHGSTRGKAAARRSRCLVGQEEEMEQWR 151
           P   E + +++  AR  ST+GK AARR+R     E ++E+ R
Sbjct: 128 PEEDEREMVAEARARLASTQGKKAARRAR-----ERQVEESR 164

>CCA_PYRKO (Q5JJ38) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 456

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 208 SGETIEVLGWTGGRDGAMEAGREEEMDKWE 119
           S E  EVLGW  GR GA +A    E+D+ E
Sbjct: 329 SREGFEVLGWNTGRYGAEKAFVMLELDRVE 358


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,916,795
Number of Sequences: 219361
Number of extensions: 507967
Number of successful extensions: 1436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)