ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast14b07 |
|---|---|
| Clone Library Name | barley_pub |
>CHEB1_RHIME (Q52883) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 349 Score = 31.2 bits (69), Expect = 0.70 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = -2 Query: 178 PTLCSLARELPLLADMSFLTTVTVFTSLPALIFATICHRSAEMSSKAPPAAAGSC 14 P + +L E+P + + FL + +P ++ +T+ HR AE + A A C Sbjct: 51 PDVVTLDIEMPNMNGLEFLDKIMRLRPMPVIMVSTLTHRGAEATIAALEIGAFDC 105
>CFC1_HUMAN (Q9GZR3) Cryptic protein precursor| Length = 223 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -1 Query: 272 HRRGLVDDVLRQERRQLGHVGLGRR 198 H R LV VL++ERR G GLG R Sbjct: 198 HPRSLVPSVLQRERRPCGRPGLGHR 222
>YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (Bacteriophage| SPP1 receptor protein yueB) Length = 1076 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 93 GKEVKTVTVVRNDMSARSGNSLANEQRVGYV 185 GK V + +VRND+ GN+L + Q GYV Sbjct: 853 GKNVASTKLVRNDVYGILGNTLVDGQNNGYV 883
>CHEB1_AGRT5 (O85128) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 351 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = -2 Query: 178 PTLCSLARELPLLADMSFLTTVTVFTSLPALIFATICHRSAEMSSKAPPAAAGSC 14 P + +L E+P + + FL + +P ++ +++ HR A+ S A A C Sbjct: 51 PDVVTLDIEMPEMNGLEFLEKIMRLRPMPVIMVSSLTHRGADASLAALEIGAFDC 105
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 84 IRAGKEVKTVTVVRNDMSARSGNSLANEQRVGYVEAGSPPAKTDVPEL 227 +RA +T RND +G + RV +A PPA+ VP+L Sbjct: 15 VRARARPRTRRRHRNDHPLLAGRRYLRDDRVRLQDARKPPARARVPQL 62
>IF2_THIDA (Q3SKX1) Translation initiation factor IF-2| Length = 922 Score = 28.9 bits (63), Expect = 3.5 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +3 Query: 105 KTVTVVRNDMSARSGNSLANEQRVGYVEAGSPPAKTDVP-ELAALLAKDVVDETAA 269 K+ T V+ D +A + +LA + A PPA +VP E A + A+ V ET A Sbjct: 91 KSRTYVKRDPAALAAEALAAAEPAAAAPAAPPPALEEVPAEPAPIEAQAPVAETPA 146
>CHEB1_CAUCR (O87717) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 344 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = -2 Query: 178 PTLCSLARELPLLADMSFLTTVTVFTSLPALIFATICHRSAEMSSKAPPAAAGSC 14 P + +L E+P + + FL + +P ++ +T+ AEM+ +A A C Sbjct: 50 PDVVTLDIEMPNMNGIDFLEKIMRLRPMPVVMVSTLTQAGAEMTLRALELGAVDC 104
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -2 Query: 202 GGEPASTYPTLCSLARELPLLADMSFLTTVTVFTSLPALIFATIC 68 GGE +T+ T L +A S +TTVT FT P I T+C Sbjct: 170 GGEITTTFVTKNIPTTYLTTIAPTSSVTTVTNFT--PTTITTTVC 212
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -2 Query: 202 GGEPASTYPTLCSLARELPLLADMSFLTTVTVFTSLPALIFATIC 68 GGE +T+ T L +A S +TTVT FT P I T+C Sbjct: 171 GGEITTTFVTKNIPTTYLTTIAPTSSVTTVTNFT--PTTITTTVC 213
>PPR3A_MOUSE (Q99MR9) Protein phosphatase 1 regulatory subunit 3A (Protein| phosphatase 1 glycogen-associated regulatory subunit) (Protein phosphatase type-1 glycogen targeting subunit) (RGL) Length = 1089 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +3 Query: 78 AKIRAGKEVKTVTVVRNDMSARSGNSL--ANEQRVGYVEAGSPPAKTDVPELAALLAKDV 251 AK+ KE +T V N+ +++ S+ E +GY + + K + +L +LL+KD+ Sbjct: 497 AKVDNKKEKQTCLGV-NENPSKNFQSVFQTQEGHMGYPKISTEGDKANNQDLTSLLSKDI 555 Query: 252 VDETAAVVAFP 284 T AV P Sbjct: 556 TANTWAVTVDP 566
>HEPA_HCMVA (P16827) DNA helicase/primase complex-associated protein| Length = 873 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 61 SAEMSSKAPPAAAGSCCC 8 S +S PPAA G CCC Sbjct: 655 SDRVSPSTPPAALGGCCC 672
>PLSB_HUMAN (Q9HCL2) Glycerol-3-phosphate acyltransferase, mitochondrial| precursor (EC 2.3.1.15) (GPAT) Length = 828 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -2 Query: 199 GEPASTYPTLCSLARELPLLADMSFLTTVTVFTSLPALIFATICHRS 59 G P ST P L S + + A + +L + SLP F +CH + Sbjct: 600 GGPTSTPPNLISQEQLVRKAASLCYLLSNEGTISLPCQTFYQVCHET 646
>MUTS_PSEF5 (Q4KHE3) DNA mismatch repair protein mutS| Length = 859 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 219 PELAALLAKDVVDETAAVV 275 PELAALLAK ++D AV+ Sbjct: 404 PELAALLAKAIIDNPPAVI 422 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,208,820 Number of Sequences: 219361 Number of extensions: 380138 Number of successful extensions: 1760 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1742 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1760 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
