ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast13h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNC_RALSO (Q8Y0I1) Ribonuclease III (EC 3.1.26.3) (RNase III) 30 1.4
2CTPG_MYCTU (P63689) Probable cation-transporting ATPase G (EC 3.... 27 8.8
3CTPG_MYCBO (P63690) Probable cation-transporting ATPase G (EC 3.... 27 8.8
4RNC_RALEJ (Q46Z18) Ribonuclease III (EC 3.1.26.3) (RNase III) 27 8.8

>RNC_RALSO (Q8Y0I1) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 256

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 357 IRERGQGERPDLAVLEELVGGDHVLARAAEFELRVT*PTVPAAISGTSSSRRGREQ 190
           ++E  QG +  +A+ +  V   H  A   +FE+  T P +   +SG+ +SRR  EQ
Sbjct: 157 LQEYLQGHK--IALPQYAVVATHGAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQ 210



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>CTPG_MYCTU (P63689) Probable cation-transporting ATPase G (EC 3.6.3.-)|
          Length = 771

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 294 DHVLARAAEFELRVT*PTVPAAISGTSSSRRGREQQVVDGAG 169
           + VLA AA  E R   P   A ++ T ++    + Q V GAG
Sbjct: 486 EEVLAVAAALEARSEHPLAVAVLAATQATTAASDVQAVPGAG 527



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>CTPG_MYCBO (P63690) Probable cation-transporting ATPase G (EC 3.6.3.-)|
          Length = 771

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 294 DHVLARAAEFELRVT*PTVPAAISGTSSSRRGREQQVVDGAG 169
           + VLA AA  E R   P   A ++ T ++    + Q V GAG
Sbjct: 486 EEVLAVAAALEARSEHPLAVAVLAATQATTAASDVQAVPGAG 527



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>RNC_RALEJ (Q46Z18) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 256

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 357 IRERGQGERPDLAVLEELVGGDHVLARAAEFELRVT*PTVPAAISGTSSSRRGREQ 190
           ++E  QG +  +A+ +  V   H  A + +FE+    P +   + GT +SRR  EQ
Sbjct: 157 LQEYLQGHK--IALPQYNVIATHGAAHSQQFEVECMVPKLEVRVFGTGASRRAAEQ 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,036,545
Number of Sequences: 219361
Number of extensions: 451625
Number of successful extensions: 1503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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