ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast13h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
2dbj|AK104087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
3dbj|AK072701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 6e-33
4dbj|AK067632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 1e-30
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
6dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
7dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
8ref|XM_463680.1| Oryza sativa (japonica cultivar-group), predic... 115 8e-23
9gb|BT019303.1| Zea mays clone Contig976.F mRNA sequence 88 2e-14
10gb|BT018425.1| Zea mays clone EL01N0362C11.d mRNA sequence 88 2e-14
11gb|AY103615.1| Zea mays PCO148672 mRNA sequence 80 5e-12
12emb|CR848708.12| Wallaby DNA sequence from clone MEKBa-201B9, co... 46 0.063
13gb|DQ143963.2| Streptomyces rimosus oxytetracycline gene cluster... 42 0.99
14ref|XM_844795.1| PREDICTED: Canis familiaris similar to nuclear ... 42 0.99
15emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 0.99
16emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 42 0.99
17emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 42 0.99
18gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 0.99
19ref|XM_466234.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.9
20ref|XM_466235.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.9
21gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.9
22gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
23ref|XM_424728.1| PREDICTED: Gallus gallus similar to DEAH (Asp-G... 40 3.9
24ref|XM_421624.1| PREDICTED: Gallus gallus similar to eukaryotic ... 40 3.9
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.9
26gb|AF121970.1| Pseudomonas aeruginosa topoisomerase (top), putat... 40 3.9
27ref|XM_571449.1| Cryptococcus neoformans var. neoformans JEC21 n... 40 3.9
28gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 3.9
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.9
30emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 3.9
31emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 40 3.9
32emb|AJ515144.2|AXY515144 Achromobacter xylosoxidans plasmid pA81... 40 3.9
33gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 3.9
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
35dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
36gb|AF533985.1| Streptomyces sp. EN27 plasmid pEN2701, complete s... 40 3.9
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
40gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome... 40 3.9
41emb|BX935498.1| Gallus gallus finished cDNA, clone ChEST868a3 40 3.9
42gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, comp... 40 3.9
43dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
44dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
45dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
46dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
47dbj|AK121206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
48dbj|AK100088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
49emb|AJ327350.1|HSA327350 Homo sapiens genomic sequence surroundi... 40 3.9
50dbj|AK069928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
51gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.9
52emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4,... 40 3.9
53gb|AC140789.2| Gallus gallus BAC clone TAM31-90N23 from chromoso... 40 3.9 
>dbj|AK105800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A10, full
           insert sequence
          Length = 1598

 Score =  149 bits (75), Expect = 6e-33
 Identities = 155/181 (85%), Gaps = 3/181 (1%)
 Strand = Plus / Plus

                                                                       
Query: 121 gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
           ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 66  gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 125

                                                                       
Query: 181 ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
           |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 126 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 185

                                                                       
Query: 241 cgcgtctccct---cgccggccgcgccaggagccccgtcattgcgatggcttccgccaag 297
             ||||||| |   |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 186 tccgtctccatcgccgccggccgcgccaggagccccatcattgcgatggcttctgccaag 245

            
Query: 298 g 298
           |
Sbjct: 246 g 246
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>dbj|AK104087.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B10, full
           insert sequence
          Length = 1590

 Score =  149 bits (75), Expect = 6e-33
 Identities = 155/181 (85%), Gaps = 3/181 (1%)
 Strand = Plus / Plus

                                                                       
Query: 121 gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
           ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 66  gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 125

                                                                       
Query: 181 ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
           |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 126 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 185

                                                                       
Query: 241 cgcgtctccct---cgccggccgcgccaggagccccgtcattgcgatggcttccgccaag 297
             ||||||| |   |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 186 tccgtctccatcgccgccggccgcgccaggagccccatcattgcgatggcttctgccaag 245

            
Query: 298 g 298
           |
Sbjct: 246 g 246
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>dbj|AK072701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139A20, full
           insert sequence
          Length = 1559

 Score =  149 bits (75), Expect = 6e-33
 Identities = 155/181 (85%), Gaps = 3/181 (1%)
 Strand = Plus / Plus

                                                                       
Query: 121 gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
           ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 64  gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 123

                                                                       
Query: 181 ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
           |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 124 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 183

                                                                       
Query: 241 cgcgtctccct---cgccggccgcgccaggagccccgtcattgcgatggcttccgccaag 297
             ||||||| |   |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 184 tccgtctccatcgccgccggccgcgccaggagccccatcattgcgatggcttctgccaag 243

            
Query: 298 g 298
           |
Sbjct: 244 g 244
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>dbj|AK067632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112O12, full
           insert sequence
          Length = 1702

 Score =  141 bits (71), Expect = 1e-30
 Identities = 148/173 (85%), Gaps = 3/173 (1%)
 Strand = Plus / Plus

                                                                       
Query: 121 gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
           ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 64  gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 123

                                                                       
Query: 181 ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
           |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 124 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 183

                                                                
Query: 241 cgcgtctccct---cgccggccgcgccaggagccccgtcattgcgatggcttc 290
             ||||||| |   |||||||||||||||||||||| ||||||||||||||||
Sbjct: 184 tccgtctccatcgccgccggccgcgccaggagccccatcattgcgatggcttc 236
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 2e-23
 Identities = 136/161 (84%), Gaps = 3/161 (1%)
 Strand = Plus / Minus

                                                                            
Query: 121      gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
                ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 40605743 gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 40605684

                                                                            
Query: 181      ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
                |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 40605683 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 40605624

                                                         
Query: 241      cgcgtctccct---cgccggccgcgccaggagccccgtcat 278
                  ||||||| |   |||||||||||||||||||||| ||||
Sbjct: 40605623 tccgtctccatcgccgccggccgcgccaggagccccatcat 40605583
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>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0093F16
          Length = 160925

 Score =  117 bits (59), Expect = 2e-23
 Identities = 136/161 (84%), Gaps = 3/161 (1%)
 Strand = Plus / Minus

                                                                         
Query: 121   gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
             ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 47721 gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 47662

                                                                         
Query: 181   ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
             |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 47661 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 47602

                                                      
Query: 241   cgcgtctccct---cgccggccgcgccaggagccccgtcat 278
               ||||||| |   |||||||||||||||||||||| ||||
Sbjct: 47601 tccgtctccatcgccgccggccgcgccaggagccccatcat 47561
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>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482D04
          Length = 144583

 Score =  117 bits (59), Expect = 2e-23
 Identities = 136/161 (84%), Gaps = 3/161 (1%)
 Strand = Plus / Minus

                                                                         
Query: 121   gccgcgatggccggcaccgtgcccaagctcgccgccccgaggccggcggccgcggggccg 180
             ||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||| | ||||
Sbjct: 85758 gccgccatgaccggcgccgtctccaagctcgccgccccgaggccggcggccgccgcgccg 85699

                                                                         
Query: 181   ctcccctcgcagtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttc 240
             |||||  ||  |||| |||||||||||   ||||||| |||||||||| | |||||||||
Sbjct: 85698 ctcccgccggcgtccgtccgctccgcgttcctcgcctccgccccctccccgcgccgcttc 85639

                                                      
Query: 241   cgcgtctccct---cgccggccgcgccaggagccccgtcat 278
               ||||||| |   |||||||||||||||||||||| ||||
Sbjct: 85638 tccgtctccatcgccgccggccgcgccaggagccccatcat 85598
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>ref|XM_463680.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score =  115 bits (58), Expect = 8e-23
 Identities = 120/140 (85%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 143 ccaagctcgccgccccgaggccggcggccgcggggccgctcccctcgcagtccctccgct 202
           ||||||||||||||||||||||||||||||| | |||||||||  ||  |||| ||||||
Sbjct: 17  ccaagctcgccgccccgaggccggcggccgccgcgccgctcccgccggcgtccgtccgct 76

                                                                       
Query: 203 ccgcggcgctcgccttcgccccctccgcccgccgcttccgcgtctccct---cgccggcc 259
           |||||   ||||||| |||||||||| | |||||||||  ||||||| |   ||||||||
Sbjct: 77  ccgcgttcctcgcctccgccccctccccgcgccgcttctccgtctccatcgccgccggcc 136

                               
Query: 260 gcgccaggagccccgtcatt 279
           |||||||||||||| |||||
Sbjct: 137 gcgccaggagccccatcatt 156
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>gb|BT019303.1| Zea mays clone Contig976.F mRNA sequence
          Length = 1639

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 94/110 (85%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                        
Query: 192  gtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttccgcgtctccct 251
            |||||||||| |||| ||  ||||||||||||||||| | |||||  ||||||||||| |
Sbjct: 1475 gtccctccgcgccgccgcaatcgccttcgccccctccccgcgccgggtccgcgtctccgt 1416

                                                              
Query: 252  cgccggccgcgccaggagcc---ccgtcattgcgatggcttccgccaagg 298
            |||||| || ||||||| ||   ||||||||||||||||||| |||||||
Sbjct: 1415 cgccgggcgggccaggatcccctccgtcattgcgatggcttctgccaagg 1366
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>gb|BT018425.1| Zea mays clone EL01N0362C11.d mRNA sequence
          Length = 1479

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 94/110 (85%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 192 gtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttccgcgtctccct 251
           |||||||||| |||| ||  ||||||||||||||||| | |||||  ||||||||||| |
Sbjct: 118 gtccctccgcgccgccgcaatcgccttcgccccctccccgcgccgggtccgcgtctccgt 177

                                                             
Query: 252 cgccggccgcgccaggagcc---ccgtcattgcgatggcttccgccaagg 298
           |||||| || ||||||| ||   ||||||||||||||||||| |||||||
Sbjct: 178 cgccgggcgggccaggatcccctccgtcattgcgatggcttctgccaagg 227
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>gb|AY103615.1| Zea mays PCO148672 mRNA sequence
          Length = 1731

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 93/110 (84%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 192 gtccctccgctccgcggcgctcgccttcgccccctccgcccgccgcttccgcgtctccct 251
           |||||||||| |||| ||  ||||||||||||||||| | |||||  || |||||||| |
Sbjct: 239 gtccctccgcgccgccgcaatcgccttcgccccctccccgcgccgggtcagcgtctccgt 298

                                                             
Query: 252 cgccggccgcgccaggagcc---ccgtcattgcgatggcttccgccaagg 298
           |||||| || ||||||| ||   ||||||||||||||||||| |||||||
Sbjct: 299 cgccgggcgggccaggatcccctccgtcattgcgatggcttctgccaagg 348
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>emb|CR848708.12| Wallaby DNA sequence from clone MEKBa-201B9, complete sequence
          Length = 194524

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 89     tcaccaaccccgcccccggcccc 111
              |||||||||||||||||||||||
Sbjct: 152453 tcaccaaccccgcccccggcccc 152431
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>gb|DQ143963.2| Streptomyces rimosus oxytetracycline gene cluster, complete sequence
          Length = 25222

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   gccgccccgaggccggcggcc 171
             |||||||||||||||||||||
Sbjct: 14768 gccgccccgaggccggcggcc 14788
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>ref|XM_844795.1| PREDICTED: Canis familiaris similar to nuclear factor of activated
           T-cells, cytoplasmic, calcineurin-dependent 2
           interacting protein (LOC607936), mRNA
          Length = 1260

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 150 cgccgccccgaggccggcggccgcg 174
           |||| ||||||||||||||||||||
Sbjct: 46  cgcctccccgaggccggcggccgcg 22
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    cgccgccccgaggccggcggc 170
              |||||||||||||||||||||
Sbjct: 302062 cgccgccccgaggccggcggc 302082
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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   cgccgccccgaggccggcggc 170
             |||||||||||||||||||||
Sbjct: 94427 cgccgccccgaggccggcggc 94447
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>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    cgccgccccgaggccggcggc 170
              |||||||||||||||||||||
Sbjct: 155515 cgccgccccgaggccggcggc 155535
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 133    ggcaccgtgcccaagctcgccgccc 157
              |||||||||| ||||||||||||||
Sbjct: 959689 ggcaccgtgcgcaagctcgccgccc 959665
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>ref|XM_466234.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2696

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  gccggcggccgcggggccgc 181
            ||||||||||||||||||||
Sbjct: 1847 gccggcggccgcggggccgc 1866
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>ref|XM_466235.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2954

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  gccggcggccgcggggccgc 181
            ||||||||||||||||||||
Sbjct: 1950 gccggcggccgcggggccgc 1969
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
             sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   cgctcgccttcgccccctcc 228
             ||||||||||||||||||||
Sbjct: 87894 cgctcgccttcgccccctcc 87913
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>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11,
              complete sequence
          Length = 169728

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    cgtctccctcgccggccgcg 262
              ||||||||||||||||||||
Sbjct: 151037 cgtctccctcgccggccgcg 151018
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>ref|XM_424728.1| PREDICTED: Gallus gallus similar to DEAH (Asp-Glu-Ala-His) box
           polypeptide 29; nucleic acid helicase DDXx; DEAD/H
           (Asp-Glu-Ala-Asp/His) box polypeptide 29 (LOC427136),
           mRNA
          Length = 4547

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 cggcggccgcggggccgctc 183
           ||||||||||||||||||||
Sbjct: 171 cggcggccgcggggccgctc 152
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>ref|XM_421624.1| PREDICTED: Gallus gallus similar to eukaryotic translation
           initiation factor 3, subunit 5 epsilon, 47kDa;
           eukaryotic translation initiation factor 3, subunit 5
           (epsilon, 47kD); eIF3-epsilon (LOC423748), mRNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 cgccccctccgcccgccgct 238
           ||||||||||||||||||||
Sbjct: 110 cgccccctccgcccgccgct 129
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 243      cgtctccctcgccggccgcg 262
                ||||||||||||||||||||
Sbjct: 15899380 cgtctccctcgccggccgcg 15899399
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>gb|AF121970.1| Pseudomonas aeruginosa topoisomerase (top), putative transcriptional
            regulatory protein OhbR (ohbR), ortho-halobenzoate
            1,2-dioxygenase beta-ISP protein OhbA (ohbA), OhbC
            (ohbC), ortho-halobenzoate 1,2-dioxygenase alpha-ISP
            protein OhbB (ohbB), and putative transposase A (tnpA)
            genes, complete cds
          Length = 6052

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  ccctcgccggccgcgccagg 267
            ||||||||||||||||||||
Sbjct: 2763 ccctcgccggccgcgccagg 2744
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>ref|XM_571449.1| Cryptococcus neoformans var. neoformans JEC21 nuclear mRNA splicing,
            via spliceosome-related protein (CNF00260) partial mRNA
          Length = 2838

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  cgctcgccttcgccccctcc 228
            ||||||||||||||||||||
Sbjct: 2298 cgctcgccttcgccccctcc 2317
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     ccctcgccggccgcgccagg 267
               ||||||||||||||||||||
Sbjct: 3669432 ccctcgccggccgcgccagg 3669413
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 149     tcgccgccccgaggccggcggccgcggggccg 180
               |||||||||||| |||| ||||||||| ||||
Sbjct: 1109392 tcgccgccccgaagccgccggccgcggcgccg 1109361
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 91     accaaccccgcccccggccccgga 114
              ||||||||||| ||||||||||||
Sbjct: 291644 accaaccccgcgcccggccccgga 291621
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>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    accaaccccgcccccggccccgga 114
             ||||||||||| ||||||||||||
Sbjct: 10364 accaaccccgcgcccggccccgga 10387
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>emb|AJ515144.2|AXY515144 Achromobacter xylosoxidans plasmid pA81, strain A8
          Length = 98192

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   ccctcgccggccgcgccagg 267
             ||||||||||||||||||||
Sbjct: 43947 ccctcgccggccgcgccagg 43928
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 98      ccgcccccggccccggaagcagagccgc 125
               |||||| ||||||||||||| |||||||
Sbjct: 2642830 ccgcccgcggccccggaagccgagccgc 2642857
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        aggaaggaggagggagagat 20
                ||||||||||||||||||||
Sbjct: 23516008 aggaaggaggagggagagat 23516027
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       aggaaggaggagggagagat 20
               ||||||||||||||||||||
Sbjct: 1565846 aggaaggaggagggagagat 1565827
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>gb|AF533985.1| Streptomyces sp. EN27 plasmid pEN2701, complete sequence
          Length = 12855

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  ccggcggccgcggggccgct 182
            ||||||||||||||||||||
Sbjct: 6037 ccggcggccgcggggccgct 6056
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     cccctccgcccgccgcttcc 241
               ||||||||||||||||||||
Sbjct: 2709652 cccctccgcccgccgcttcc 2709671
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 243      cgtctccctcgccggccgcg 262
                ||||||||||||||||||||
Sbjct: 15893914 cgtctccctcgccggccgcg 15893933
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 162      gccggcggccgcggggccgc 181
                ||||||||||||||||||||
Sbjct: 21246658 gccggcggccgcggggccgc 21246677
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>gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome 13, complete sequence
          Length = 179176

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      aggaaggaggagggagagat 20
              ||||||||||||||||||||
Sbjct: 133344 aggaaggaggagggagagat 133363
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>emb|BX935498.1| Gallus gallus finished cDNA, clone ChEST868a3
          Length = 906

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 cggcggccgcggggccgctc 183
           ||||||||||||||||||||
Sbjct: 171 cggcggccgcggggccgctc 152
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>gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, complete sequence
          Length = 142193

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aggaaggaggagggagagat 20
             ||||||||||||||||||||
Sbjct: 23311 aggaaggaggagggagagat 23330
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>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0710H01
          Length = 187107

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    cccctccgcccgccgcttcc 241
              ||||||||||||||||||||
Sbjct: 164993 cccctccgcccgccgcttcc 165012
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>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0529C07
          Length = 174011

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    cccctccgcccgccgcttcc 241
              ||||||||||||||||||||
Sbjct: 121399 cccctccgcccgccgcttcc 121418
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>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0018I03
          Length = 145818

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aggaaggaggagggagagat 20
             ||||||||||||||||||||
Sbjct: 94090 aggaaggaggagggagagat 94071
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>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0435E12
          Length = 143188

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   gccggcggccgcggggccgc 181
             ||||||||||||||||||||
Sbjct: 29193 gccggcggccgcggggccgc 29212
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>dbj|AK121206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088A16, full
            insert sequence
          Length = 2696

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  gccggcggccgcggggccgc 181
            ||||||||||||||||||||
Sbjct: 1847 gccggcggccgcggggccgc 1866
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>dbj|AK100088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003H24, full
            insert sequence
          Length = 2955

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  gccggcggccgcggggccgc 181
            ||||||||||||||||||||
Sbjct: 1951 gccggcggccgcggggccgc 1970
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>emb|AJ327350.1|HSA327350 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-CC21R
          Length = 701

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 cctccgcccgccgcttccgc 243
           ||||||||||||||||||||
Sbjct: 99  cctccgcccgccgcttccgc 80
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>dbj|AK069928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036P06, full
           insert sequence
          Length = 1998

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 243 cgtctccctcgccggccgcg 262
           ||||||||||||||||||||
Sbjct: 14  cgtctccctcgccggccgcg 33
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     aggccggcggccgcggggccgctc 183
               ||||||||||||| ||||||||||
Sbjct: 2405172 aggccggcggccgaggggccgctc 2405195
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>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aggaaggaggagggagagat 20
             ||||||||||||||||||||
Sbjct: 71911 aggaaggaggagggagagat 71930
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>gb|AC140789.2| Gallus gallus BAC clone TAM31-90N23 from chromosome ul, complete
            sequence
          Length = 92928

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  cgccccctccgcccgccgct 238
            ||||||||||||||||||||
Sbjct: 3655 cgccccctccgcccgccgct 3674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,981,194
Number of Sequences: 3902068
Number of extensions: 1981194
Number of successful extensions: 60188
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59298
Number of HSP's gapped (non-prelim): 879
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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