>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 272 SVLSVGPRSRQYSPASRSSC 213
           ++LS GPR+R  +PASRS C
Sbjct: 23  TLLSPGPRTRPMAPASRSHC 42

>KHSE_LISMO (Q8Y4A6) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 296
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISMF (Q71WN3) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 296
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISIN (Q927U8) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 296
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
 Frame = +3

Query: 51  GTMPAPR-R*ERPRDGR-AIPRVRGLRLPRGHRIPRVPXXXXXXXXXXXGGHPDRPA-GA 221
           G   APR   + PR G     R +G+  P    IPR             GG P RP  G 
Sbjct: 175 GNASAPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTADNGRGGRPGRPGQGQ 234

Query: 222 PRGRAVLAGARADGEHG 272
            +GR    G    G  G
Sbjct: 235 GQGRGFRGGRPGQGGQG 251

>GUDP_ECOLI (Q46916) Probable glucarate transporter (D-glucarate permease)|
          Length = 450

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 147 VCDVLAGVVAHVHAEWLCRRVGALS 73
           VC  + GV+  + ++WL RR G+L+
Sbjct: 299 VCGFIGGVLGGIISDWLMRRTGSLN 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,316,918
Number of Sequences: 219361
Number of extensions: 690411
Number of successful extensions: 2622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)