>RS12_DEIRA (Q9RXK7) 30S ribosomal protein S12|
          Length = 131

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 217 DLPIARRHSLQRFLEKR--RDRVVSKAPYGTGKPSEGMGAS 333
           DLP  R H ++  L+ +  +DR  S++ YGT KP  G  A+
Sbjct: 89  DLPGVRYHIVRGSLDTQGVKDRNKSRSKYGTKKPKAGAAAA 129

>PI51A_HUMAN (Q99755) Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type I alpha) (PtdIns(4)P-5-kinase alpha) (PIP5KIalpha)
           (68 kDa type I phosphatidylinositol-4-phosphate 5-kinase
           alpha)
          Length = 562

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +1

Query: 148 STSVANGQPQPAADPSSICKLQADLPIARRHSLQRFLEKRRDRVVSKAPYGTGKPSEGMG 327
           S+SV      PA  PS  C L +     +R      LE R+D  +S  PY +G P + +G
Sbjct: 9   SSSVGFSSFDPAV-PS--CTLSSAASGIKRPMASEVLEARQDSYISLVPYASGMPIKKIG 65

>SYA_CHRVO (Q7NXM2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 877

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +1

Query: 91  VMSATNAIQAMLTRSLSLQSTSVANGQPQPAADPSSICKLQADLPIARRHSLQRFLEKRR 270
           +  +  A++  L +     ++S  +     AAD + +  L A+LP A   +L+  L+K +
Sbjct: 737 LQDSAKALEKELAKLKGQLASSAGDSLADAAADINGVKVLAAELPGADNTALRETLDKLK 796

Query: 271 DRVVSKA 291
           D++ S A
Sbjct: 797 DKLGSAA 803

>GCSPB_AERPE (Q9YA18) Probable glycine dehydrogenase [decarboxylating] subunit 2|
           (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine
           cleavage system P-protein subunit 2)
          Length = 521

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +1

Query: 91  VMSATNAIQAMLTRSLSLQSTSVANGQPQPAADPSSICKLQADLPIARRHSLQRFLEKRR 270
           V+ A   +Q  L     + + +V      PAA      +L   L I R H ++  L+KRR
Sbjct: 119 VLEAIYMVQEWLRHITGMDACTV-----HPAAGSQG--ELAGVLMIKRFHEMRGDLDKRR 171

Query: 271 DRVVSKAPYGTGKPSEGMG 327
             +V  + +GT   S  MG
Sbjct: 172 VIIVPDSAHGTNPASAAMG 190

>SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (Sema VIB)|
           (Semaphorin N) (Sema N)
          Length = 886

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +1

Query: 112 IQAMLTRSLSLQSTSVANGQPQPAADPSSICKLQADLPIARRH----SLQRFLEKRRDRV 279
           + A  + SL L + + A+ QPQ  A+P    +L A       H     L       R RV
Sbjct: 743 LSASASTSLLLLAPARASEQPQVPAEPGPESRLCAPRSCRASHPGDFPLTPHASPDRRRV 802

Query: 280 VSKAPYGTGKPSEGMGASG 336
           VS AP G   PS G G  G
Sbjct: 803 VS-APTGPLDPSVGDGLPG 820

>PROP_MOUSE (P11680) Properdin precursor (Factor P)|
          Length = 464

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = -3

Query: 325 PCLPTASRCRRELCS------PPCHDVSPGSAEGSVSWRWEDQPEACKSS*DQRQAEVVH 164
           PC P A+R R+ LC+      PP   +  G  E +V++ W      C++   Q Q  VV 
Sbjct: 389 PCSPNATRVRQRLCTPLLPKYPPTVSMVEGQGEKNVTF-WGTPRPLCEAL--QGQKLVVE 445

Query: 163 LLQKC 149
             + C
Sbjct: 446 EKRSC 450

>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 82   KPPVMSATNAIQA---MLTRSLSLQSTSVANGQPQPAADPSSICK 207
            KPPV+S   A+ +   + T  +++   SVA GQPQ AA  + + +
Sbjct: 2916 KPPVVSVPAAVVSSPGVTTLPMNVAGISVAIGQPQKAAGQTVVAQ 2960

>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 276 PVTTFLQEALKGVSPGDGKISLKLANRARISGRLRLSICYRSALE*ERPRKHSLDSIGRR 97
           P  +F++  LK    G+   S KLA  +R           +   E ++ RKH      +R
Sbjct: 57  PRYSFIRSPLKSELSGESNTSEKLAQTSR-----------KKKKEKKKRRKHQHHRKTKR 105

Query: 96  HHWRLNSSGA 67
            H +L+SSG+
Sbjct: 106 RHEQLSSSGS 115

>RADC_XANCP (Q8P456) DNA repair protein radC homolog|
          Length = 225

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 178 PAADPSSICKLQADLPIARRHSL 246
           P   P+S CKL A L +A RH L
Sbjct: 72  PGLGPASACKLSAALELANRHLL 94

>NOL9_HUMAN (Q5SY16) Nucleolar protein 9|
          Length = 702

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 325 PCLPTASRCRRELCSPPCHDVSPGSA 248
           P L +AS C R L  PP   V PG A
Sbjct: 99  PELESASSCHRPLLIPPVRPVGPGRA 124

>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2|
          Length = 2061

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 136 LSLQSTSVANGQPQPAADPSSICKLQADLPIARRHSLQRFLEKRRDRVVSKAPYGTG 306
           L LQ T+      + ++ PS I  L+ +LP      L R  E+ RDR+ S A    G
Sbjct: 86  LKLQKTASPIQPVRTSSGPSEITVLKDELPDWLLDHLPRKKERERDRLPSDADKAVG 142

>UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 14 homolog A|
           (Antigen NY-CO-16)
          Length = 771

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 182 PLILARFASFRLIFPSPGDTPFSASWRNVVTGW*AKLP 295
           P++L    + +L+FP   + P  A   +V++GW A+ P
Sbjct: 146 PVVLKNRQAEQLVFPLEKEEPAIAPIEHVLSGWKARTP 183

>DEDD2_MOUSE (Q8QZV0) DNA-binding death effector domain-containing protein 2|
           (FADD-like anti-apoptotic molecule 3) (DED-containing
           protein FLAME-3)
          Length = 330

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 187 DPSSICKLQADLPIARRHSLQRFLEKRRDRVVSKAPYGTGKPS 315
           D S++  L   L +  RH L   L ++R R VS   Y  G PS
Sbjct: 79  DESNLRLLSQLLRVLARHDLLPHLARKRRRPVSPERYSYGNPS 121

>INH_PSESM (Q87ZU3) Alkaline proteinase inhibitor precursor|
          Length = 127

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 249 LKGVSPGDGKISLKLANRARISGRLRLSI 163
           L G+S     +SLKL N A +SG+ RLS+
Sbjct: 17  LVGISGASMAMSLKLPNPAELSGQWRLSL 45

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 325 PCLPTASRCRRELCSPPCHDVSP 257
           P  PT + C +E  +PP HD +P
Sbjct: 272 PTPPTTTSCTKEKPTPPHHDTTP 294

>VGLI_HHV2H (P13291) Glycoprotein I|
          Length = 372

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 91  VMSATNAIQAMLTRSLSLQSTSVANGQPQPAADPSSI 201
           V SATNA + +L  +LS   T V NG    + DP+ +
Sbjct: 151 VGSATNASRFVLGVALSANGTFVYNGSDYGSCDPAQL 187

>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = -3

Query: 316 PTASRCRREL-CS--PPCHDVSPGSAEGSVSWRWEDQPEACK 200
           P A RC R+  CS    C    PG  +    W W +  E C+
Sbjct: 695 PPAPRCSRDCGCSFHSHCRKRGPGFCDECQDWTWGEHCERCR 736

>CF182_MOUSE (Q8VDS7) Protein C6orf182 homolog|
          Length = 400

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 130 RSLSLQSTSVANGQPQPAADPSSICKLQADLPIARRHSLQRFLEKRRDRVVSKAPYGTGK 309
           R    ++TS A   PQ + +P SIC   ++L +     L +   + R+ +      G   
Sbjct: 239 RKKPFRTTSQARANPQSSGEPVSICDSLSELLMTMEEELDQMNMEHRELLRQTMQPGNHS 298

Query: 310 PSE 318
            SE
Sbjct: 299 VSE 301

>KNIR_DROVI (Q24753) Zygotic gap protein knirps|
          Length = 481

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 148 STSVANGQPQPAADPSSICKLQADLPIARRHS 243
           +T     QPQPAA P  +C L AD  +  +HS
Sbjct: 250 ATVPQQSQPQPAASPIDVC-LGADDDVQSQHS 280

>DPP4_MOUSE (P28843) Dipeptidyl peptidase 4 (EC 3.4.14.5) (Dipeptidyl peptidase|
           IV) (DPP IV) (T-cell activation antigen CD26)
           (Thymocyte-activating molecule) (THAM) [Contains:
           Dipeptidyl peptidase 4 membrane form (Dipeptidyl
           peptidase IV membrane form); D
          Length = 760

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 233 LAMGRSA*SLQIELGSAAG*GCPFATEVLWSESDRVSIAWI 111
           L+   SA  +QI   ++   G  +  +V+W+  +R+S+ W+
Sbjct: 270 LSSSSSAAPIQIPAPASVARGDHYLCDVVWATEERISLQWL 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.127    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,009,881
Number of Sequences: 219361
Number of extensions: 904117
Number of successful extensions: 2126
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)