Clone Information

BLAST Search Result

Clone Name	bast13d05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (L...	33	0.14
2	ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P...	33	0.18
3	SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3)	32	0.32
4	HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)	32	0.41
5	FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foo...	32	0.54
6	PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor ...	31	0.92
7	GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4) (End...	30	1.2
8	VST2_HEVMY (Q04611) Structural protein 2 precursor	30	1.2
9	VST2_HEVBU (P29326) Structural protein 2 precursor	30	1.2
10	AVT1_YEAST (P47082) Vacuolar amino acid transporter 1	30	1.2
11	SDC3_RAT (P33671) Syndecan-3 precursor (SYND3) (N-syndecan) (Neu...	30	1.2
12	RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA	30	1.2
13	VST2_HEVPA (P33426) Structural protein 2 precursor	30	1.6
14	TEGP_BHV1S (Q08098) Probable tegument protein	30	1.6
15	NFASC_HUMAN (O94856) Neurofascin precursor	30	1.6
16	CH38_DROME (P07183) Chorion protein S38	30	2.0
17	BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa...	29	2.7
18	SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal t...	29	2.7
19	YAAX_ECOLI (P75616) Hypothetical protein yaaX precursor	29	3.5
20	SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3....	29	3.5
21	FP1_MYTED (Q25460) Adhesive plaque matrix protein (Polyphenolic ...	29	3.5
22	HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant prot...	29	3.5
23	VIRC2_AGRTU (P06666) Protein virC2	29	3.5
24	YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative spl...	28	4.5
25	RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA	28	4.5
26	NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding p...	28	4.5
27	HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor (Histid...	28	4.5
28	RAD23_YEAST (P32628) UV excision repair protein RAD23	28	5.9
29	MPA5B_LOLPR (Q40237) Major pollen allergen Lol p 5b precursor (L...	28	5.9
30	ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate...	28	5.9
31	SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)	28	5.9
32	ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulen...	28	5.9
33	RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif pro...	28	5.9
34	RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p...	28	5.9
35	PMP20_CHLPN (Q9Z812) Probable outer membrane protein pmp20 precu...	28	5.9
36	VST2_HEVME (Q03500) Structural protein 2 precursor	28	7.8
37	METE_PSEAE (P57703) 5-methyltetrahydropteroyltriglutamate--homoc...	28	7.8
38	Y372_PYRAE (Q8ZZ93) UPF0284 protein PAE0372	28	7.8
39	SDC3_HUMAN (O75056) Syndecan-3 (SYND3)	28	7.8
40	YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor	28	7.8
41	RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/in...	28	7.8
42	KNG1_MOUSE (O08677) Kininogen-1 precursor [Contains: Kininogen-1...	28	7.8
43	RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast prec...	28	7.8
44	CSUP_DROME (Q9V3A4) Protein catecholamines up	28	7.8
45	HUNB_DROVI (P13361) Protein hunchback	28	7.8
46	RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p...	28	7.8
47	FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chor...	28	7.8

>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p|
           Ib)
          Length = 308

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
 Frame = -1

Query: 225 AMKTLSSAAPARPNE-----PPISAAYDGVPRVYRSMKSTATLARSATP------AMSAT 79
           AM+  SS+ P+RP       PP  AA +    V+ +  + A  A +         A +AT
Sbjct: 216 AMRPTSSSPPSRPRSSRPTPPPSPAAPEVKYAVFEAALTKAITAMTQAQKAGKPAAAAAT 275

Query: 78  AGATPSTRMAAGMDMIPAPTTLVDTL 1
           A AT +T  A    ++P P  +V +L
Sbjct: 276 AAATVATAAATAAAVLPPPLLVVQSL 301

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>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
 Frame = -1

Query: 240 PTQLKAMKTLSSAAPARPNEP-------PISA-AYDGVPRVYRSMKSTA---TLARSATP 94
           P  +  +  L++ APARP +P       P SA A  G P    ++ + A   ++ARS+ P
Sbjct: 483 PAPISTVIDLTANAPARPADPAPAAAPGPASAGAQIGTPAAAAAVTAAAAAPSVARSSAP 542

Query: 93  AMSATAGATPSTRMAAGMDMIPAP 22
           + + TA AT +    +     P+P
Sbjct: 543 SPAVTAAATSTAAAISTRAPTPSP 566

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>SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3)|
          Length = 442

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = -1

Query: 252 TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAG 73
           T   PT   A  T ++ AP+ P  PP +A    V            L  +AT  ++  A 
Sbjct: 171 TTGAPTMATAPATAATTAPSTPEAPPATATVADVRTTGIQGMLPLPLTTAATAKITTPAA 230

Query: 72  ATPSTRMAAGMDMIPAPTTLVDT 4
            +P T +A      P P  LV+T
Sbjct: 231 PSPPTTVATLDTEAPTP-RLVNT 252

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>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 135  SMKSTATLARSATPAMSATAGATPSTRMAAGMDMIPAPT 19
            S++   TL  SA PA SA+ G++PS+   +G   +P PT
Sbjct: 3393 SLEQNKTLP-SAKPASSASPGSSPSSGQQSGSSSVPGPT 3430

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>FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foot protein 1)|
           (MGFP1) (MGFP-1)
          Length = 751

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -1

Query: 285 PDITSPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLAR 106
           P I+ P   +     PT  +A  +  S   A+P+ PP   A    P  Y++ K T     
Sbjct: 261 PKISYPPTYKAKPSYPTSYRAKPSYPSTYKAKPSYPPTYKAKPSYPPTYKA-KPTYPSTY 319

Query: 105 SATPAMSATAGATPS 61
            A P+   T  A PS
Sbjct: 320 KAKPSYPPTYKAKPS 334



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -1

Query: 240 PTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPS 61
           P   KA  + SS   A+P+ PP   A    P  Y++ K +      A P+   T  A PS
Sbjct: 486 PRTYKAKPSYSSTYKAKPSYPPTYKAKPSYPPTYKA-KPSYPPTYKAKPSYPPTYKAKPS 544

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>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)|
            (Receptor-linked protein-tyrosine phosphatase 99A)
            (DPTP99A)
          Length = 1301

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
 Frame = -1

Query: 276  TSPMIMR*TVRVPTQLKAMKTLSSAAPARPN----EPPISAAYDGVPRVYRSMKSTATLA 109
            T+P ++     +P  +  + + SS  P  P+    +PP +           S + ++T+A
Sbjct: 1105 TNPSLLPILSLLPPTVAPLSSSSSTTPPTPSTPTPQPPQTIQLSSHSPSDLSHQISSTVA 1164

Query: 108  RSATPAMSAT----AGATPSTRM 52
             +A+P   AT    AGATP+T M
Sbjct: 1165 NAASPVTPATASASAGATPTTPM 1187

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>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase E1) (Cellulase E1)
           (Endocellulase E1)
          Length = 562

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 210 SSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPS 61
           +SA+P+    P +S +    P   R+   T T   S TP ++ TA  TP+
Sbjct: 401 ASASPSSQPSPSVSPSPSPSPSASRTPTPTPTPTASPTPTLTPTATPTPT 450

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>VST2_HEVMY (Q04611) Structural protein 2 precursor|
          Length = 660

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = -1

Query: 198 PARPNEPPISAAYDGVPRVYRSMK--STATLARSATPAMSA-----TAGATPSTRMAAGM 40
           P  P  P ++AA    PRV +  +   +A   ++  PA+++     TAGA P T +A   
Sbjct: 58  PTNPFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAH 117

Query: 39  DMIPAP 22
           D  P P
Sbjct: 118 DTPPVP 123

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>VST2_HEVBU (P29326) Structural protein 2 precursor|
          Length = 660

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = -1

Query: 198 PARPNEPPISAAYDGVPRVYRSMK--STATLARSATPAMSA-----TAGATPSTRMAAGM 40
           P  P  P ++AA    PRV +  +   +A   ++  PA+++     TAGA P T +A   
Sbjct: 58  PTNPFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAH 117

Query: 39  DMIPAP 22
           D  P P
Sbjct: 118 DTPPVP 123

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>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1|
          Length = 602

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +2

Query: 17  VVGAGIMSIPAAMRXXXXXXXXXXXXXXXXXXXXXXDFMLRYTRGTP---SYAALMGGSF 187
           ++G G++++P  ++                      + + R     P   SYA L   +F
Sbjct: 221 LIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDPTLISYADLGYAAF 280

Query: 188 GRAGAALLNVFIAFNCVGTLTVYLIIIGDVMS 283
           G  G AL++     + +G+    +I+ GD ++
Sbjct: 281 GTKGRALISALFTLDLLGSGVSLVILFGDSLN 312

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>SDC3_RAT (P33671) Syndecan-3 precursor (SYND3) (N-syndecan) (Neuroglycan)|
          Length = 442

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = -1

Query: 252 TVRVPTQLKAMKTLSSAAPARPNEPPISAA-----YDGVPRVYRSMKSTATLARSATPAM 88
           T   PT   A  T ++ AP+ P  PP +A        G+  +     +TA  A++ TPA 
Sbjct: 171 TTGAPTMATAPATAATTAPSTPAAPPATATTADIRTTGIQGLLPLPLTTAATAKATTPA- 229

Query: 87  SATAGATPSTRMAAGMDMIPAPTTLVDTL 1
                             +P+P T V TL
Sbjct: 230 ------------------VPSPPTTVTTL 240

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>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDGHDPGAHHARRH 5
           H   H  H H   D HD G HH   H
Sbjct: 121 HEHDHEHHHHDHEDHHDHGHHHHHEH 146

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>VST2_HEVPA (P33426) Structural protein 2 precursor|
          Length = 660

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
 Frame = -1

Query: 198 PARPNEPPISAAYDGVPRVYR-------SMKSTATLARSATPAMSATAGATPSTRMAAGM 40
           P  P  P ++AA    PRV +       + +  A    +A+     TAGA P T +A   
Sbjct: 58  PTNPFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQRPAAASRRRPTTAGAAPLTAVAPAH 117

Query: 39  DMIPAP 22
           D  P P
Sbjct: 118 DTPPVP 123

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>TEGP_BHV1S (Q08098) Probable tegument protein|
          Length = 158

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 201 APARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPSTRMAAGMDMIPAP 22
           A A P  PP   +   +P +  +++     A +   A +A AG TP    A G   +P P
Sbjct: 32  ADAAPPSPPPEGSIVSIPILELTIEDAPASAEATGTAAAAPAGRTPDANAAPG-GYVPVP 90

Query: 21  TTLVD 7
               D
Sbjct: 91  AADAD 95

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>NFASC_HUMAN (O94856) Neurofascin precursor|
          Length = 1347

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
 Frame = -1

Query: 258  R*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSAT 79
            R T+   TQ+ + + ++  +PA PNE   +AA   +P               AT A+S+T
Sbjct: 1004 RFTLSARTQVGSGEAVTEESPAPPNEATPTAAPPTLP----------PTTVGATGAVSST 1053

Query: 78   -AGATPSTRMAAGMDMIP--APTTLVDT 4
             A A  +T  A  + +IP  APTT+  T
Sbjct: 1054 DATAIAATTEATTVPIIPTVAPTTIATT 1081

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>CH38_DROME (P07183) Chorion protein S38|
          Length = 306

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDGHDPGAHHARRH 5
           HG GH  H HG   GH  G H A  H
Sbjct: 207 HGHGHGGHGHG-HSGHGHGGHGAGPH 231



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDG--HDPGAHHARR 8
           HG GH+ H HG      H PG H   R
Sbjct: 214 HGHGHSGHGHGGHGAGPHGPGPHDGGR 240

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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
 Frame = -1

Query: 225 AMKTLSSAAPARPNEPPISAAYDG-----------VPRVYRSMKSTATLARSATPAMSAT 79
           A  T   A P+ P  PP+S A              V  +   +     L    TP M+  
Sbjct: 500 ARPTPPQARPSHPGGPPVSGALGAGLGTNTSLAQMVSGLVGQLLMQPVLVAQGTPGMAPA 559

Query: 78  AGATPSTRMAAGMDMIPAP 22
           + + P+T  A      PAP
Sbjct: 560 SASAPATAQAQAPAPAPAP 578

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>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -1

Query: 198 PARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPSTRMAAGMDMIPAP 22
           P  P  PP  A   G P V  ++   A +AR   P  +      P  R AAG+  IP P
Sbjct: 292 PPPPPPPPRGALVRGAP-VRGAIARGAAVARGVPPPPAVRGAPAPRAR-AAGIQRIPLP 348

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>YAAX_ECOLI (P75616) Hypothetical protein yaaX precursor|
          Length = 98

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 76  RGHAEHPHGRRDGHDPGAHH 17
           R H + PH    GH PG HH
Sbjct: 78  RHHKKAPHDHHGGHGPGKHH 97

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>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad|
           ubiquitination regulatory factor 1 homolog) (DSmurf)
           (Lethal with a checkpoint kinase protein)
          Length = 1061

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 192 RPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPST 58
           R   PP SAA  G P    +  +T + A +  P  +  + ATP+T
Sbjct: 604 RGTVPPTSAANAGTPAPPSATPATPSAAAAVPPQATPASNATPTT 648

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>FP1_MYTED (Q25460) Adhesive plaque matrix protein (Polyphenolic adhesive|
           protein) (Foot protein 1) (MEFP1) (Fragment)
          Length = 875

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = -1

Query: 240 PTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKS-----TATLARSATPAMSATA 76
           P   K  KT  S+  A+P+ PP   A    P  Y++  S      A     A P   +T 
Sbjct: 158 PPSYKTKKTYPSSYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTY 217

Query: 75  GATPS 61
            A PS
Sbjct: 218 KAKPS 222



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = -1

Query: 285 PDITSPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKS-----T 121
           P  T P   +  +  P   KA  +  +   A+P+ PP   A    P  Y++  S      
Sbjct: 527 PKTTYPPTYKPKISYPPTYKAKPSYPATYKAKPSYPPTYKAKPSYPPTYKAKPSYPPTYK 586

Query: 120 ATLARSATPAMSATAGATPS 61
           A  +  A P   +T  A PS
Sbjct: 587 AKPSYKAKPTYPSTYKAKPS 606



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -1

Query: 252 TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAG 73
           T +     KA  T  S   A+P+ PP   A    P  Y++ K +      A P   +T  
Sbjct: 584 TYKAKPSYKAKPTYPSTYKAKPSYPPTYKAKPSYPPTYKA-KPSYPPTYKAKPTYPSTYK 642

Query: 72  ATPS 61
           A PS
Sbjct: 643 AKPS 646

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>HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant protein 1|
           precursor
          Length = 1802

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = -1

Query: 243 VPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATP 64
           VP  + +  T S +A        + +AY   P V  ++ ST T + SA  A+S+T  ++P
Sbjct: 454 VPVAVSSTYTSSPSASV-----VVPSAYASSPSVPVAVSSTYTSSPSAPAAISSTYTSSP 508

Query: 63  STRMAAGMDMIPAPT 19
           S  +A       +P+
Sbjct: 509 SAPVAVSSTYTSSPS 523

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>VIRC2_AGRTU (P06666) Protein virC2|
          Length = 202

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
 Frame = -1

Query: 294 PTGPDITSP-MIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTA 118
           P    I SP   ++ TV   +   + K L     ARP  P +S  YD + R Y   KS  
Sbjct: 54  PVAEHIYSPDRQLKLTVDALSPPPSPKKLQVFLSARPPAPQVSKTYDNLVRQYSPSKSLQ 113

Query: 117 TLARSATPAMSATAGATPSTRMAAGMDMIPAPT 19
            + R A     +   A  S R+A     IP  T
Sbjct: 114 MILRRALDDFESML-ADGSFRVALKSYPIPLTT 145

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>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 289 GARHHVPDDYEVDGEGPDAVEGDEDVEQ 206
           G    V +D EVD +G D  E DED E+
Sbjct: 203 GGEEDVEEDEEVDEDGDDDEEVDEDAEE 230

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>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDGHDPGAHHARRH 5
           HG  +  H H     HD G HH   H
Sbjct: 121 HGHDYEHHHHDHEHHHDHGHHHHHEH 146

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>NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1299

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
 Frame = -1

Query: 297 LPTGPDITSPMIMR*TVRVPTQLKAMKTLSSAAPARP-NEPPISAA-YDGVPRVYRSMKS 124
           L +GP   S M +  +   PT +  +   + A PA P + PP+SA    G   V    KS
Sbjct: 698 LSSGPSEQSQMSLSDSSMPPTPVTPVTPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKS 757

Query: 123 TATLARSATPAM--------SATAGATPSTRMAA 46
           ++ +   ++P M         A++   PS++ AA
Sbjct: 758 SSGVLLVSSPTMPHLGTMLSPASSQTAPSSQAAA 791

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>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG)
          Length = 525

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 70  HAEHPHGRRDGHDPGAHHARRH 5
           H +HPHG    H P AHH   H
Sbjct: 357 HEQHPHG----HHPHAHHPHEH 374

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>RAD23_YEAST (P32628) UV excision repair protein RAD23|
          Length = 398

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = -1

Query: 234 QLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPSTR 55
           Q+  M +   +   +  EPPI+      P    S +++ +   SA PA +A  G+ P   
Sbjct: 67  QVVFMVSQKKSTKTKVTEPPIAPESATTPGRENSTEASPSTDASAAPAATAPEGSQPQEE 126

Query: 54  MAAGMDMIPAPTT 16
             A  +   + +T
Sbjct: 127 QTATTERTESAST 139

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>MPA5B_LOLPR (Q40237) Major pollen allergen Lol p 5b precursor (Lol p Vb)|
          Length = 339

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
 Frame = -1

Query: 243 VPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATP 64
           +PT + A+K   +A  A   E   + +   + +   +M       + ATPA +ATA  TP
Sbjct: 241 IPTLVAAVKQAYAAKQATAPEVKYTVSETALKKAVTAMSEAE---KEATPAAAATATPTP 297

Query: 63  ------STRMAAGMDMIPAPTTLVDT 4
                 +T  AA     PA  T   T
Sbjct: 298 AAATATATPAAAYATATPAAATATAT 323

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>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate|
           (pro-S-)-lyase) (Citrate cleavage enzyme)
          Length = 1100

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 201 APARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPSTRMAAGM--DMIP 28
           APA PN+PP +A             ST   +R+A+ + S      P+ +    M  D +P
Sbjct: 420 APAIPNQPPTAAHTANFLLNASGSTSTPAPSRTASFSESRADEVAPAKKAKPAMPQDSVP 479

Query: 27  APTTL 13
           +P +L
Sbjct: 480 SPRSL 484

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>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
 Frame = -1

Query: 252 TVRVPTQLKAMKTLSSAAPARPNEPPISA-------AYDGVPRVYRSMKSTATLARSATP 94
           T R P    +  +  + A   P  PP  A        ++  P   RS + + +  R ATP
Sbjct: 230 TSRKPAPASSSNSKHAPAKMPPPPPPPKAPARKSATTHETRPSASRSRRRSPSPRRPATP 289

Query: 93  AMSATAGATPSTRMA 49
              A  G   STR A
Sbjct: 290 PKPAAVGTRRSTRQA 304

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>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -1

Query: 249 VRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGA 70
           +RV  +  A   L  A      EPP + A    P    +  + AT A  ATPA  A    
Sbjct: 136 LRVTAEHLARLRLRRAGGEGAPEPPATPATPATPATPATPATPATPATPATPATPARVRF 195

Query: 69  TPSTRM 52
           +P  R+
Sbjct: 196 SPHVRV 201

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>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (S1-1 protein)
          Length = 852

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
 Frame = -1

Query: 195 ARPNEPPISAAYDGVPRVYRSMKSTAT------LARSATPAMSA----TAGATPSTRMAA 46
           A P EPP+  +Y      Y S + T +      L  +  P M+     T+GA P T +  
Sbjct: 349 AAPEEPPVDYSYYQQDEGYGSSQGTDSLYAHGYLKNTKGPGMTGTKGDTSGAGPETSLEG 408

Query: 45  GMDMI 31
           G D +
Sbjct: 409 GTDSV 413

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>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = -1

Query: 273 SPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATP 94
           SP ++  T  V    K ++T S+A+      PP   A  G P    ++ STA+   +  P
Sbjct: 130 SPSVVTATTSVHESNKNIQTFSTASVG--TAPPNMGASFGSPTFSSTVPSTASPMNTVPP 187

Query: 93  AMSATAGATPSTRMAAGMDMIPAP 22
                  A PS      +  IP P
Sbjct: 188 PPIPPIPAMPSLPPMPSIPPIPVP 211

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>PMP20_CHLPN (Q9Z812) Probable outer membrane protein pmp20 precursor|
           (Polymorphic membrane protein 20)
          Length = 1723

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = -1

Query: 252 TVRVPTQLKAMKTLSSAA--PARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSAT 79
           T+ +    K+++ +S+ A  PA   EP   A    +        +  T A SATPA++  
Sbjct: 298 TLTISNITKSIEFISNKASVPAPAPEPTSPAPSSLINSTTIDTSTLQTRAASATPAVAPV 357

Query: 78  AGATP---STRMAAG 43
           A  TP   ST+  AG
Sbjct: 358 AAVTPTPISTQETAG 372

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>VST2_HEVME (Q03500) Structural protein 2 precursor|
          Length = 659

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
 Frame = -1

Query: 198 PARPNEPPISAAYDGVPRVYR-------SMKSTATLARSATPAMSATAGATPSTRMAAGM 40
           P  P  P ++AA    PR+ +       + +  A    +A+    ATAGA   T +A   
Sbjct: 58  PTNPFAPDVAAASGSGPRLRQPARPLGSTWRDQAQRPSAASRRRPATAGAAALTAVAPAH 117

Query: 39  DMIPAP 22
           D  P P
Sbjct: 118 DTSPVP 123

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>METE_PSEAE (P57703) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 766

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -1

Query: 246 RVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGAT 67
           R  T+ +A + L++   +R     + A+    PR+++        A  A+ A   +  A 
Sbjct: 366 RAATEPEAAEVLAALEESRA----VQASRASSPRIHKPAVQARLAAIKASDAQRRSPFAE 421

Query: 66  PSTRMAAGMDMIPAPTTLV 10
              R  AG+D+   PTT +
Sbjct: 422 RIARQRAGLDLPAFPTTTI 440

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>Y372_PYRAE (Q8ZZ93) UPF0284 protein PAE0372|
          Length = 338

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = -1

Query: 210 SSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPSTRMAAGMDMI 31
           SSA+P  P E  I+   +G+ RV   +K    +     P   A A          G+ ++
Sbjct: 164 SSASPNNPKELKIAVVKEGLRRVSAPLKPLEAVCEMGDPVHLAVAAIALGVSECGGVPVL 223

Query: 30  PAPTTL 13
              T +
Sbjct: 224 AGGTQM 229

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>SDC3_HUMAN (O75056) Syndecan-3 (SYND3)|
          Length = 384

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 25/97 (25%), Positives = 37/97 (38%)
 Frame = -1

Query: 294 PTGPDITSPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTAT 115
           PT    TSP+++      P+Q     + + A  A        A   G P V  ++ +T  
Sbjct: 76  PTLEPATSPLVVTEVPEEPSQRATTVSTTMATTA--------ATSTGDPTV-ATVPATVA 126

Query: 114 LARSATPAMSATAGATPSTRMAAGMDMIPAPTTLVDT 4
            A  +TPA       T   R      ++P P T V T
Sbjct: 127 TATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVAT 163

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>YQU3_CAEEL (Q09550) Hypothetical protein F26C11.3 precursor|
          Length = 1317

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 279 ITSPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATL---A 109
           IT+PM    TV    + +  +   S++   P     S +    P    S  ST +    A
Sbjct: 330 ITTPMEQSSTVSSVQKTRTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTSQSSPA 389

Query: 108 RSATPAMSATAGATPST 58
            ++T   S+T G+TP+T
Sbjct: 390 STSTVPESSTVGSTPTT 406

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>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference|
           protein 3)
          Length = 980

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 294 PTGPDITSPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAA 163
           P  PD TSP   + + R P     + T+    PARP  PP+  A
Sbjct: 259 PATPDATSPT-SKGSPRRPPPPPPLPTVPPIGPARPLAPPVPPA 301

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>KNG1_MOUSE (O08677) Kininogen-1 precursor [Contains: Kininogen-1 heavy chain;|
           Bradykinin; Kininogen-1 light chain]
          Length = 661

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDGHDPGAHHARRH 5
           HG GH  H HG   GH  G  H   H
Sbjct: 499 HGHGHG-HGHGHGHGHGHGHGHGHGH 523

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>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
 Frame = -1

Query: 222  MKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSA----TPAMSA------TAG 73
            ++ L +AAP  P  P  +AA    PR   S  + A     A    TP ++A       A 
Sbjct: 912  LEQLPAAAPTPPPPPASAAAASTAPRAAESRPAAAPAPAEATATRTPLLTAPQLAPQRAS 971

Query: 72   ATPSTRMAAG 43
            A+P   +A G
Sbjct: 972  ASPDLELARG 981

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>CSUP_DROME (Q9V3A4) Protein catecholamines up|
          Length = 449

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDGHDPGAHH 17
           H  GH  H H     HD G HH
Sbjct: 91  HDHGHHHHGHDHDHDHDHGHHH 112

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>HUNB_DROVI (P13361) Protein hunchback|
          Length = 816

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -1

Query: 210 SSAAPARPNEPPI-----SAAYDGVPRVYRSMKSTATLARSATPAMSATAGATPSTRMAA 46
           +SAA A+  + P+     SAA  G P    +  + A  A +A PA  A        +  A
Sbjct: 418 ASAAAAQQQQQPVATSQLSAALQGFPMPAAAAGTAAGAAGTAAPAAVAPVSPPSPAKSVA 477

Query: 45  GMDMIPA-PTTLVDTL 1
            ++  P+ P+ L+  L
Sbjct: 478 SVEQAPSLPSALLPPL 493

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>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = -1

Query: 273 SPMIMR*TVRVPTQLKAMKTLSSAAPARPNEPPISAAYDGVPRVYRSMKSTATLARSATP 94
           SP ++  T  V    K ++T S+A+      PP   A  G P    ++ STA+   +  P
Sbjct: 130 SPSVVTATTSVHESNKNIQTFSTASIG--TAPPNMGASFGSPTFSSTVPSTASPMNTVPP 187

Query: 93  AMSATAGATPSTRMAAGMDMIPAP 22
                  A PS      +  IP P
Sbjct: 188 PPIPPIPAMPSLPPMPSIPPIPVP 211

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>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane|
           protein)
          Length = 2038

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 82  HGRGHAEHPHGRRDGHDPGAHHARRH 5
           HG GH  H HG   GH  G  H   H
Sbjct: 596 HGHGHG-HGHGHGHGHGHGHGHGHGH 620


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,079,197
Number of Sequences: 219361
Number of extensions: 458354
Number of successful extensions: 2554
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 2212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2494
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result