ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast12h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Plus Query: 107 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 166 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 91061 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 91120 Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 226 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 91121 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 91180 Query: 227 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgcg 286 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 91181 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 91240 Query: 287 tccaagctgtgccgcct 303 ||||||| ||||||||| Sbjct: 91241 tccaagccgtgccgcct 91257 Score = 139 bits (70), Expect = 6e-30 Identities = 145/170 (85%) Strand = Plus / Plus Query: 107 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 166 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 102448 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 102507 Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 226 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 102508 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 102567 Query: 227 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgt 276 |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 102568 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgt 102617 Score = 135 bits (68), Expect = 9e-29 Identities = 161/192 (83%) Strand = Plus / Plus Query: 112 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 171 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 88573 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 88632 Query: 172 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 231 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 88633 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 88692 Query: 232 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgcgtccaa 291 |||||||||||| |||||||||||||| ||||| |||||| |||| ||||||| |||||| Sbjct: 88693 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 88752 Query: 292 gctgtgccgcct 303 || ||||||||| Sbjct: 88753 gcagtgccgcct 88764 Score = 91.7 bits (46), Expect = 1e-15 Identities = 160/198 (80%) Strand = Plus / Plus Query: 106 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 165 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 95445 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 95504 Query: 166 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 225 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 95505 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 95564 Query: 226 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgc 285 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||| ||||||| Sbjct: 95565 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 95624 Query: 286 gtccaagctgtgccgcct 303 |||||||| |||||||| Sbjct: 95625 gtccaagccttgccgcct 95642
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Plus Query: 107 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 166 ||||| |||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19490349 ccgagagccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgcgacggtg 19490408 Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 226 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | |||||| || Sbjct: 19490409 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcgccacg 19490468 Query: 227 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgcg 286 ||||||||||||||||| ||||||||||||| |||||||||||| | || ||||||| | Sbjct: 19490469 ctctgggtggactgcgataccgggtacgtgtcgtcgtcctacgcgcgtgtcccgtgcggg 19490528 Query: 287 tccaagctgtgccgcct 303 ||||||| ||||||||| Sbjct: 19490529 tccaagccgtgccgcct 19490545 Score = 139 bits (70), Expect = 6e-30 Identities = 145/170 (85%) Strand = Plus / Plus Query: 107 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 166 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 19501736 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 19501795 Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 226 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 19501796 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 19501855 Query: 227 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgt 276 |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 19501856 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgt 19501905 Score = 135 bits (68), Expect = 9e-29 Identities = 161/192 (83%) Strand = Plus / Plus Query: 112 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 171 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 19487861 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 19487920 Query: 172 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 231 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 19487921 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 19487980 Query: 232 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgcgtccaa 291 |||||||||||| |||||||||||||| ||||| |||||| |||| ||||||| |||||| Sbjct: 19487981 ggtggactgcgaggccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 19488040 Query: 292 gctgtgccgcct 303 || ||||||||| Sbjct: 19488041 gcagtgccgcct 19488052 Score = 91.7 bits (46), Expect = 1e-15 Identities = 160/198 (80%) Strand = Plus / Plus Query: 106 cccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacggg 165 ||||||||||||| ||||||||||| |||||| |||||||| ||||||| ||||| Sbjct: 19494733 cccgagcgccgtgctgctgccggtggacaaggacggcgcaacgcagcagtacgtgacgat 19494792 Query: 166 cttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctc 225 ||| ||||||| ||||| || || |||| ||||||| | ||||| | |||||| Sbjct: 19494793 gttctggcagcggacgccgagtgtgcccgtgaaggccgtggttgacctcgcgggcgccat 19494852 Query: 226 gctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgc 285 |||||||||||||||||| ||||||||| ||| ||||| || ||| |||| ||||||| Sbjct: 19494853 gctctgggtggactgcgagtccgggtacgagtcgtcgtcgtatgcgcgcgtgccgtgcgg 19494912 Query: 286 gtccaagctgtgccgcct 303 |||||||| |||||||| Sbjct: 19494913 gtccaagccttgccgcct 19494930
>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence Length = 1741 Score = 139 bits (70), Expect = 6e-30 Identities = 145/170 (85%) Strand = Plus / Plus Query: 107 ccgagcgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggc 166 |||||| ||||||||||||||||||| |||||| ||| ||| ||||||| ||||| Sbjct: 327 ccgagctccgtggtgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatg 386 Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcg 226 ||||||||||| ||||| ||||| || |||| ||||||||| ||||| | ||| || | Sbjct: 387 ttccggcagcggacgccgcaggtgcccgtgaaggccgtgctggacctcgcgggcaccatg 446 Query: 227 ctctgggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgt 276 |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 447 ctctgggtggactgcgacgccgggtacgtgtcctcgtcgtacgccggcgt 496
>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full insert sequence Length = 1474 Score = 113 bits (57), Expect = 3e-22 Identities = 159/192 (82%), Gaps = 2/192 (1%) Strand = Plus / Plus Query: 112 cgccgtggtgctgccggtgaggaaggacagcgcaacggggcagtacctgacgggcttccg 171 ||||||| ||||||||||||| |||||| ||| ||| ||||||| ||||| ||||| Sbjct: 143 cgccgtgctgctgccggtgagcaaggacgacgcgacgcagcagtacgtgacgatgttccg 202 Query: 172 gcagcgaacgccccaggtcccggtgacggccgtgctcgaccttggaggcgcctcgctctg 231 |||||| ||||| |||| || ||| ||||||||| ||||| | |||||| |||| || Sbjct: 203 gcagcggacgccgcaggcgcccttgaaggccgtgctggacctcgccggcgccacgctgtg 262 Query: 232 ggtggactgcgacgccgggtacgtgtcctcgtcctacgcgggcgtaccgtgcgcgtccaa 291 ||||||||| | |||||||||||||| ||||| |||||| |||| ||||||| |||||| Sbjct: 263 ggtggactgag--gccgggtacgtgtcgtcgtcgtacgcgcgcgtgccgtgcgggtccaa 320 Query: 292 gctgtgccgcct 303 || ||||||||| Sbjct: 321 gcagtgccgcct 332
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 3e-04 Identities = 71/85 (83%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 223 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 15504957 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 15505016 Query: 224 tcgctctgggtggactgcgacgccg 248 |||||||||||||||||||||||| Sbjct: 15505017 acgctctgggtggactgcgacgccg 15505041 Score = 50.1 bits (25), Expect = 0.004 Identities = 75/92 (81%), Gaps = 6/92 (6%) Strand = Plus / Plus Query: 218 ggcgcctcgctctgggtggactgcgacgccg------ggtacgtgtcctcgtcctacgcg 271 |||||| |||||||||||||||||||||||| |||||| ||| || || ||||| Sbjct: 15505011 ggcgccacgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgcc 15505070 Query: 272 ggcgtaccgtgcgcgtccaagctgtgccgcct 303 ||||| || |||| |||||||| |||||||| Sbjct: 15505071 ggcgtgccatgcgggtccaagccctgccgcct 15505102
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 54.0 bits (27), Expect = 3e-04 Identities = 71/85 (83%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 223 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 25812 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 25871 Query: 224 tcgctctgggtggactgcgacgccg 248 |||||||||||||||||||||||| Sbjct: 25872 acgctctgggtggactgcgacgccg 25896 Score = 50.1 bits (25), Expect = 0.004 Identities = 75/92 (81%), Gaps = 6/92 (6%) Strand = Plus / Plus Query: 218 ggcgcctcgctctgggtggactgcgacgccg------ggtacgtgtcctcgtcctacgcg 271 |||||| |||||||||||||||||||||||| |||||| ||| || || ||||| Sbjct: 25866 ggcgccacgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgcc 25925 Query: 272 ggcgtaccgtgcgcgtccaagctgtgccgcct 303 ||||| || |||| |||||||| |||||||| Sbjct: 25926 ggcgtgccatgcgggtccaagccctgccgcct 25957
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 54.0 bits (27), Expect = 3e-04 Identities = 71/85 (83%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 167 ttccggcagcgaacgccccaggtcccggtgacggccgtgctcgacct---tggaggcgcc 223 |||| |||||||||||| | ||| |||||| ||||||| | ||||| || |||||| Sbjct: 154249 ttccagcagcgaacgccgcgggtggcggtgaaggccgtggtggacctctcgggcggcgcc 154308 Query: 224 tcgctctgggtggactgcgacgccg 248 |||||||||||||||||||||||| Sbjct: 154309 acgctctgggtggactgcgacgccg 154333 Score = 50.1 bits (25), Expect = 0.004 Identities = 75/92 (81%), Gaps = 6/92 (6%) Strand = Plus / Plus Query: 218 ggcgcctcgctctgggtggactgcgacgccg------ggtacgtgtcctcgtcctacgcg 271 |||||| |||||||||||||||||||||||| |||||| ||| || || ||||| Sbjct: 154303 ggcgccacgctctgggtggactgcgacgccgccgccgggtacgcgtcgtcctcgtacgcc 154362 Query: 272 ggcgtaccgtgcgcgtccaagctgtgccgcct 303 ||||| || |||| |||||||| |||||||| Sbjct: 154363 ggcgtgccatgcgggtccaagccctgccgcct 154394
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctctgccagccagccctcagc 28 ||||||||||||||||||||| Sbjct: 2946487 ctctgccagccagccctcagc 2946467
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 ccgagcgccgtggtgctgccggtga 131 ||||||||||||||||||| ||||| Sbjct: 1844748 ccgagcgccgtggtgctgctggtga 1844772
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aggtcccggtgacggccgtg 205 |||||||||||||||||||| Sbjct: 3188471 aggtcccggtgacggccgtg 3188490
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tctgccagccagccctcagc 28 |||||||||||||||||||| Sbjct: 131523 tctgccagccagccctcagc 131504
>gb|AF121063.1|AF121063 Anopheles sp. near punctulatus 18S small subunit ribosomal RNA gene, complete sequence Length = 2073 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cgcgggcgtaccgtgcgcgt 287 |||||||||||||||||||| Sbjct: 685 cgcgggcgtaccgtgcgcgt 704
>gb|AF121062.1|AF121062 Anopheles punctulatus 18S small subunit ribosomal RNA gene, complete sequence Length = 2102 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cgcgggcgtaccgtgcgcgt 287 |||||||||||||||||||| Sbjct: 689 cgcgggcgtaccgtgcgcgt 708
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cgtgctcgtgccgcgcggcc 97 |||||||||||||||||||| Sbjct: 4935908 cgtgctcgtgccgcgcggcc 4935927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,261,750 Number of Sequences: 3902068 Number of extensions: 1261750 Number of successful extensions: 23973 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23731 Number of HSP's gapped (non-prelim): 236 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
