ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast12h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
2gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
4gb|AC005725.1|AC005725 Homo sapiens chromosome 17, clone hRPK.68... 40 2.6
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6

>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07
              map S790A, complete sequence
          Length = 178523

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     gcggctccggggcgatggcg 92
              ||||||||||||||||||||
Sbjct: 159767 gcggctccggggcgatggcg 159786



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>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0095J10 map near S6115, complete sequence
          Length = 123717

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gcggctccggggcgatggcg 92
             ||||||||||||||||||||
Sbjct: 96210 gcggctccggggcgatggcg 96191



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 73       gcggctccggggcgatggcg 92
                ||||||||||||||||||||
Sbjct: 13024313 gcggctccggggcgatggcg 13024294



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>gb|AC005725.1|AC005725 Homo sapiens chromosome 17, clone hRPK.680_C_21, complete sequence
          Length = 197915

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gcggctccggggcgatggcg 92
             ||||||||||||||||||||
Sbjct: 13647 gcggctccggggcgatggcg 13628



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 73       gcggctccggggcgatggcg 92
                ||||||||||||||||||||
Sbjct: 13104492 gcggctccggggcgatggcg 13104473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,176
Number of Sequences: 3902068
Number of extensions: 172176
Number of successful extensions: 12515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12500
Number of HSP's gapped (non-prelim): 15
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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