ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast12g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596618.1| Saccharum officinarum clone SCCCCL4009G04, comple... 170 2e-39
2ref|XM_470036.1| Oryza sativa (japonica cultivar-group), mRNA 153 4e-34
3dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 4e-34
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 4e-31
5gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 143 4e-31
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 4e-31
7dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 4e-31
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
10dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
11dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
12dbj|AP004803.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
13ref|XM_480945.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
14gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
15gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.0
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
18dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
19dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
20dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
23emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.0
24emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chro... 42 1.0
25ref|XM_476187.1| Oryza sativa (japonica cultivar-group), predic... 40 4.1
26ref|XM_954917.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.1
27ref|XM_326002.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.1
28gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.1
29gb|BC059215.1| Mus musculus transcriptional regulating factor 1,... 40 4.1
30gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, co... 40 4.1
31emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on... 40 4.1
32dbj|AK046822.1| Mus musculus 10 days neonate medulla oblongata c... 40 4.1
33dbj|AK035176.1| Mus musculus 12 days embryo embryonic body betwe... 40 4.1
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
35dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
38gb|AY081774.1| Mus musculus transcriptional regulating protein 1... 40 4.1
39gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 o... 40 4.1
40dbj|AB080263.1| Oryza sativa (japonica cultivar-group) OsRad51A2... 40 4.1
41dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
42dbj|AP006175.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
43dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
44dbj|AK120886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
45dbj|AK101403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.1
46emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 40 4.1
47emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.1
48ref|NM_172622.1| Mus musculus transcriptional regulating factor ... 40 4.1
49gb|BC108416.1| Mus musculus transcriptional regulating factor 1,... 40 4.1
50dbj|AB080264.1| Oryza sativa (japonica cultivar-group) OsRad51A2... 40 4.1 
>gb|AY596618.1| Saccharum officinarum clone SCCCCL4009G04, complete sequence
          Length = 811

 Score =  170 bits (86), Expect = 2e-39
 Identities = 110/118 (93%)
 Strand = Plus / Plus

                                                                       
Query: 193 gctcaggacgctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtg 252
           ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct: 183 gctcaagacgctgaaggcctgctcatcaacggcaacttcgagacggcgccgaggaagctg 242

                                                                     
Query: 253 aacaagaccctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacg 310
           ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||
Sbjct: 243 aacaagaccctcatcgtgggccggcactcgctgcctgggtggacggtgcaggggcacg 300
to top
>ref|XM_470036.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1474

 Score =  153 bits (77), Expect = 4e-34
 Identities = 101/109 (92%)
 Strand = Plus / Plus

                                                                       
Query: 202 gctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtgaacaagacc 261
           ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 236 gctgaaggcctcctcatcaatggcaacttcgagacggcgccgaggaaggtgaacaagaca 295

                                                            
Query: 262 ctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacg 310
           |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 296 ctcatcgtcggccgccactcgctgccggggtggacgctgcgggggcacg 344
to top
>dbj|AK059286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D10, full
           insert sequence
          Length = 1396

 Score =  153 bits (77), Expect = 4e-34
 Identities = 101/109 (92%)
 Strand = Plus / Plus

                                                                       
Query: 202 gctgaaggcctgctgatgaacggcaacttcgagacggcgccgaggaaggtgaacaagacc 261
           ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 235 gctgaaggcctcctcatcaatggcaacttcgagacggcgccgaggaaggtgaacaagaca 294

                                                            
Query: 262 ctcatcgtgggccggcactcgctgccggggtggacgctgcggggccacg 310
           |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 295 ctcatcgtcggccgccactcgctgccggggtggacgctgcgggggcacg 343
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 4e-31
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                            
Query: 223      ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282
                |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 33462563 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 33462622

                                            
Query: 283      ctgccggggtggacgctgcggggccacg 310
                ||||||||||||||||||||||| ||||
Sbjct: 33462623 ctgccggggtggacgctgcgggggcacg 33462650
to top
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score =  143 bits (72), Expect = 4e-31
 Identities = 84/88 (95%)
 Strand = Plus / Minus

                                                                         
Query: 223   ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282
             |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 35548 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 35489

                                         
Query: 283   ctgccggggtggacgctgcggggccacg 310
             ||||||||||||||||||||||| ||||
Sbjct: 35488 ctgccggggtggacgctgcgggggcacg 35461
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 4e-31
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                            
Query: 223      ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282
                |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 33553073 ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 33553132

                                            
Query: 283      ctgccggggtggacgctgcggggccacg 310
                ||||||||||||||||||||||| ||||
Sbjct: 33553133 ctgccggggtggacgctgcgggggcacg 33553160
to top
>dbj|AK121037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050P15, full
           insert sequence
          Length = 1182

 Score =  143 bits (72), Expect = 4e-31
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                       
Query: 223 ggcaacttcgagacggcgccgaggaaggtgaacaagaccctcatcgtgggccggcactcg 282
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 42  ggcaacttcgagacggcgccgaggaaggtgaacaagacactcatcgtcggccgccactcg 101

                                       
Query: 283 ctgccggggtggacgctgcggggccacg 310
           ||||||||||||||||||||||| ||||
Sbjct: 102 ctgccggggtggacgctgcgggggcacg 129
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 278     actcgctgccggggtggacgctgcggggcc 307
               ||||||||||||||||| ||||||| ||||
Sbjct: 5802236 actcgctgccggggtgggcgctgcgcggcc 5802265
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 96       ctccgcctcctccgccgtcgcc 117
                ||||||||||||||||||||||
Sbjct: 26599293 ctccgcctcctccgccgtcgcc 26599314
to top
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1119_B04
          Length = 151721

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 278    actcgctgccggggtggacgctgcggggcc 307
              ||||||||||||||||| ||||||| ||||
Sbjct: 109264 actcgctgccggggtgggcgctgcgcggcc 109293
to top
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0460H04
          Length = 166490

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 96     ctccgcctcctccgccgtcgcc 117
              ||||||||||||||||||||||
Sbjct: 132946 ctccgcctcctccgccgtcgcc 132967
to top
>dbj|AP004803.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0677B10
          Length = 134423

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 96    ctccgcctcctccgccgtcgcc 117
             ||||||||||||||||||||||
Sbjct: 15723 ctccgcctcctccgccgtcgcc 15744
to top
>ref|XM_480945.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 378

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 93  cgtctccgcctcctccgccgtcgcc 117
           |||||||||||||||||||| ||||
Sbjct: 253 cgtctccgcctcctccgccgccgcc 229
to top
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0013C12 map near S6115, complete sequence
          Length = 123718

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 93    cgtctccgcctcctccgccgtcgcc 117
             |||||||||||||||||||| ||||
Sbjct: 68793 cgtctccgcctcctccgccgccgcc 68769
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 108     cgccgtcgccacgctcgccgt 128
               |||||||||||||||||||||
Sbjct: 1565589 cgccgtcgccacgctcgccgt 1565609
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 93       cgtctccgcctcctccgccgtcgcc 117
                |||||||||||||||||||| ||||
Sbjct: 18861924 cgtctccgcctcctccgccgccgcc 18861948



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       ccgcctcctccgccgtcgcc 117
                ||||||||||||||||||||
Sbjct: 18917046 ccgcctcctccgccgtcgcc 18917027
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 93       cgtctccgcctcctccgccgtcgcc 117
                |||||||||||||||||||| ||||
Sbjct: 12901457 cgtctccgcctcctccgccgccgcc 12901433
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 93      cgtctccgcctcctccgccgtcgcc 117
               |||||||||||||||||||| ||||
Sbjct: 8820820 cgtctccgcctcctccgccgccgcc 8820844
to top
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0437G01
          Length = 147101

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 93    cgtctccgcctcctccgccgtcgcc 117
             |||||||||||||||||||| ||||
Sbjct: 98569 cgtctccgcctcctccgccgccgcc 98593
to top
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1033_B09
          Length = 120648

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 93   cgtctccgcctcctccgccgtcgcc 117
            |||||||||||||||||||| ||||
Sbjct: 4463 cgtctccgcctcctccgccgccgcc 4487
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 93       cgtctccgcctcctccgccgtcgcc 117
                |||||||||||||||||||| ||||
Sbjct: 12981664 cgtctccgcctcctccgccgccgcc 12981640
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 93       cgtctccgcctcctccgccgtcgcc 117
                |||||||||||||||||||| ||||
Sbjct: 18788151 cgtctccgcctcctccgccgccgcc 18788175



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       ccgcctcctccgccgtcgcc 117
                ||||||||||||||||||||
Sbjct: 18843273 ccgcctcctccgccgtcgcc 18843254
to top
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 153064

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 93     cgtctccgcctcctccgccgtcgcc 117
              |||||||||||||||||||| ||||
Sbjct: 108455 cgtctccgcctcctccgccgccgcc 108431



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ccgcctcctccgccgtcgcc 117
             ||||||||||||||||||||
Sbjct: 53333 ccgcctcctccgccgtcgcc 53352
to top
>emb|AL670720.7| Mouse DNA sequence from clone RP23-321M9 on chromosome 4, complete
             sequence
          Length = 200628

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    ctgcgtcgccaagctcgcttg 49
             |||||||||||||||||||||
Sbjct: 37924 ctgcgtcgccaagctcgcttg 37944
to top
>ref|XM_476187.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  ctccgccgtcgccacgctcg 124
            ||||||||||||||||||||
Sbjct: 1641 ctccgccgtcgccacgctcg 1660
to top
>ref|XM_954917.1| Neurospora crassa OR74A hypothetical protein (NCU06148.1) partial
            mRNA
          Length = 2316

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  cctcctccgccgtcgccacg 120
            ||||||||||||||||||||
Sbjct: 2053 cctcctccgccgtcgccacg 2034
to top
>ref|XM_326002.1| Neurospora crassa OR74A hypothetical protein (NCU06148.1) partial
            mRNA
          Length = 2316

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  cctcctccgccgtcgccacg 120
            ||||||||||||||||||||
Sbjct: 2053 cctcctccgccgtcgccacg 2034
to top
>gb|AC146716.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1003C08,
             complete sequence
          Length = 152527

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ctccgccgtcgccacgctcg 124
             ||||||||||||||||||||
Sbjct: 17010 ctccgccgtcgccacgctcg 16991
to top
>gb|BC059215.1| Mus musculus transcriptional regulating factor 1, mRNA (cDNA clone
            MGC:66566 IMAGE:6412734), complete cds
          Length = 4555

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ctccgcctcctccgccgtcgccac 119
            ||||||||||||||||| ||||||
Sbjct: 2342 ctccgcctcctccgccgccgccac 2365
to top
>gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, complete sequence
          Length = 206979

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 96     ctccgcctcctccgccgtcgccac 119
              ||||||||||||||||| ||||||
Sbjct: 102762 ctccgcctcctccgccgccgccac 102785
to top
>emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on chromosome 22, complete
             sequence
          Length = 35860

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    cgtctccgcctcctccgccg 112
             ||||||||||||||||||||
Sbjct: 23283 cgtctccgcctcctccgccg 23264
to top
>dbj|AK046822.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830015H24
            product:ZINC FINGER TRANSCRIPTION FACTOR TREP-132 homolog
            [Homo sapiens], full insert sequence
          Length = 3953

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ctccgcctcctccgccgtcgccac 119
            ||||||||||||||||| ||||||
Sbjct: 1820 ctccgcctcctccgccgccgccac 1843
to top
>dbj|AK035176.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430096I18 product:similar to ZINC FINGER
            TRANSCRIPTION FACTOR TREP-132 [Homo sapiens], full insert
            sequence
          Length = 3255

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ctccgcctcctccgccgtcgccac 119
            ||||||||||||||||| ||||||
Sbjct: 1949 ctccgcctcctccgccgccgccac 1972
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 207      aggcctgctgatgaacggcaacttcgag 234
                |||||||||| | |||||||||||||||
Sbjct: 24702563 aggcctgctgctcaacggcaacttcgag 24702590
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 90       ctgcgtctccgcctcctccgccgtcgcc 117
                |||||||||| |||||||||||| ||||
Sbjct: 20042307 ctgcgtctcctcctcctccgccgccgcc 20042334
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     ctccgccgtcgccacgctcg 124
               ||||||||||||||||||||
Sbjct: 7278755 ctccgccgtcgccacgctcg 7278736
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 98       ccgcctcctccgccgtcgcc 117
                ||||||||||||||||||||
Sbjct: 30029779 ccgcctcctccgccgtcgcc 30029798
to top
>gb|AY081774.1| Mus musculus transcriptional regulating protein 132 mRNA, complete
            cds
          Length = 4272

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ctccgcctcctccgccgtcgccac 119
            ||||||||||||||||| ||||||
Sbjct: 2089 ctccgcctcctccgccgccgccac 2112
to top
>gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 of the complete
            genome
          Length = 14652

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 209  gcctgctgatgaacggcaacttcg 232
            ||||||||||| ||||||||||||
Sbjct: 5067 gcctgctgatggacggcaacttcg 5044
to top
>dbj|AB080263.1| Oryza sativa (japonica cultivar-group) OsRad51A2 gene for Rad51,
           complete cds
          Length = 4165

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  ccgcctcctccgccgtcgcc 117
           ||||||||||||||||||||
Sbjct: 851 ccgcctcctccgccgtcgcc 832
to top
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0685G12
          Length = 149155

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   ccgcctcctccgccgtcgcc 117
            ||||||||||||||||||||
Sbjct: 9376 ccgcctcctccgccgtcgcc 9395
to top
>dbj|AP006175.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0669G04
          Length = 74610

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 90    ctgcgtctccgcctcctccgccgtcgcc 117
             |||||||||| |||||||||||| ||||
Sbjct: 49438 ctgcgtctcctcctcctccgccgccgcc 49465
to top
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654B04
          Length = 156907

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     ccgcctcctccgccgtcgcc 117
              ||||||||||||||||||||
Sbjct: 130055 ccgcctcctccgccgtcgcc 130074
to top
>dbj|AK120886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028P22, full
            insert sequence
          Length = 2111

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  ctccgccgtcgccacgctcg 124
            ||||||||||||||||||||
Sbjct: 1690 ctccgccgtcgccacgctcg 1709
to top
>dbj|AK101403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037G04, full
           insert sequence
          Length = 2423

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 90  ctgcgtctccgcctcctccgccgtcgcc 117
           |||||||||| |||||||||||| ||||
Sbjct: 14  ctgcgtctcctcctcctccgccgccgcc 41
to top
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
             complete sequence
          Length = 133856

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 207   aggcctgctgatgaacggcaacttcgag 234
             |||||||||| | |||||||||||||||
Sbjct: 92086 aggcctgctgctcaacggcaacttcgag 92113
to top
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151203

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    ccgcctcctccgccgtcgcc 117
             ||||||||||||||||||||
Sbjct: 13163 ccgcctcctccgccgtcgcc 13144
to top
>ref|NM_172622.1| Mus musculus transcriptional regulating factor 1 (Trerf1), mRNA
          Length = 3953

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ctccgcctcctccgccgtcgccac 119
            ||||||||||||||||| ||||||
Sbjct: 1820 ctccgcctcctccgccgccgccac 1843
to top
>gb|BC108416.1| Mus musculus transcriptional regulating factor 1, mRNA (cDNA clone
            MGC:118525 IMAGE:5697521), complete cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ctccgcctcctccgccgtcgccac 119
            ||||||||||||||||| ||||||
Sbjct: 1802 ctccgcctcctccgccgccgccac 1825
to top
>dbj|AB080264.1| Oryza sativa (japonica cultivar-group) OsRad51A2 mRNA for Rad51,
           complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  ccgcctcctccgccgtcgcc 117
           ||||||||||||||||||||
Sbjct: 52  ccgcctcctccgccgtcgcc 33


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,674,742
Number of Sequences: 3902068
Number of extensions: 1674742
Number of successful extensions: 45836
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44998
Number of HSP's gapped (non-prelim): 838
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top