ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast12g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly... 32 0.53
2PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assem... 32 0.53
3PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assemb... 32 0.53
4MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH 29 3.4
5MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH 29 3.4
6MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH 29 3.4
7EVC_HUMAN (P57679) Ellis-van Creveld syndrome protein (DWF-1) 28 5.9

>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein|
           (Clathrin assembly lymphoid myeloid leukemia protein)
           (rCALM)
          Length = 640

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 7   ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 120
           ASP+S SAG  +   + D+ S P++ +S+S  PN++ D
Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395



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>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein|
           (Clathrin assembly lymphoid myeloid leukemia protein)
          Length = 652

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 7   ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 120
           ASP+S SAG  +   + D+ S P++ +S+S  PN++ D
Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395



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>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein|
           (Clathrin assembly lymphoid myeloid leukemia) (CALM)
          Length = 660

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 7   ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 120
           ASP+S SAG  +   + D+ S P++ +S+S  PN++ D
Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395



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>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH|
          Length = 448

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 7   ASPLSISAGRDLKQASSDLASQP 75
           AS L I  GRDL QASSD  S+P
Sbjct: 93  ASKLGIVTGRDLAQASSDHFSKP 115



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>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH|
          Length = 448

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 7   ASPLSISAGRDLKQASSDLASQP 75
           AS L I  GRDL QASSD  S+P
Sbjct: 93  ASKLGIVTGRDLAQASSDHFSKP 115



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>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH|
          Length = 448

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 7   ASPLSISAGRDLKQASSDLASQP 75
           AS L I  GRDL QASSD  S+P
Sbjct: 93  ASKLGIVTGRDLAQASSDHFSKP 115



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>EVC_HUMAN (P57679) Ellis-van Creveld syndrome protein (DWF-1)|
          Length = 992

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 125  PRSVTSLGLSDEEDMAAGWLARSELACFRSRPAEMESGDAG 3
            P+    LG+ + ED+A+G      L+  R    E E+GD+G
Sbjct: 940  PQERGDLGVPNNEDLASGDQTSGSLSSKRLSQQESEAGDSG 980


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,808,342
Number of Sequences: 219361
Number of extensions: 337415
Number of successful extensions: 1098
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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