ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast12f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GTR14_HUMAN (Q8TDB8) Solute carrier family 2, facilitated glucos... 29 5.5
2SBCC_TREPA (O83635) Nuclease sbcCD subunit C 28 9.4
3ARR1_ARATH (Q940D0) Two-component response regulator ARR1 28 9.4
4DC1L1_RAT (Q9QXU8) Cytoplasmic dynein 1 light intermediate chain... 28 9.4

>GTR14_HUMAN (Q8TDB8) Solute carrier family 2, facilitated glucose transporter|
           member 14 (Glucose transporter type 14)
          Length = 520

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 305 TNWKTNMLTGLLVPYIFFTMPSLLFSFIRGEIGSWIAF 418
           +NW +N L GLL P   + + + +F    G + +++AF
Sbjct: 432 SNWTSNFLVGLLFPSAAYYLGAYVFIIFTGFLITFLAF 469



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>SBCC_TREPA (O83635) Nuclease sbcCD subunit C|
          Length = 1047

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 385 KGEEQRRHGEENVWDQETRQHVGLPVRLVQHQE 287
           +  EQ    +E +  QETR H  +  RL++HQE
Sbjct: 470 RAREQLLQTKEQIHLQETRTHAVVLARLLEHQE 502



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>ARR1_ARATH (Q940D0) Two-component response regulator ARR1|
          Length = 690

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = -3

Query: 388 YKGEEQRRHGEENVWDQETRQHVGLPVRLVQHQEIYGGGEG 266
           Y      RH       +  R H   P  +VQH ++Y  G G
Sbjct: 592 YSSSSMSRHNTTVAATEHGRNHQQPPSGMVQHHQVYADGNG 632



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>DC1L1_RAT (Q9QXU8) Cytoplasmic dynein 1 light intermediate chain 1 (Dynein|
           light intermediate chain 1, cytosolic) (Dynein light
           chain A) (DLC-A)
          Length = 523

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 77  ARSAMANSFLSMKTGPAAGASEASQALLESDLRELTMAAR 196
           A   +AN   S   GPAAG  E  Q L    LRE++  +R
Sbjct: 22  ASGPLANELASGSGGPAAGDDEDGQNLWSRILREVSTRSR 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,526,658
Number of Sequences: 219361
Number of extensions: 534184
Number of successful extensions: 1626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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