>CIC_DROME (Q9U1H0) Putative transcription factor capicua (Protein fettucine)|
          Length = 1403

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 161 IHAPQLRQQCLRVQHRHRVPRPAAQA-LPA 247
           +HAP  +QQ L+ QH H  P P   A LPA
Sbjct: 153 MHAPPPQQQPLQQQHHHHQPPPPPPASLPA 182

>TRPB_RHOS4 (Q9X4E5) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 409

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 246 LRDAYDDMLLDGVQPVRDTFHSLIVGTMKG 335
           L+DA +D L D V  VRDTF+   +GT+ G
Sbjct: 177 LKDAMNDALRDWVTNVRDTFY--CIGTVAG 204

>TRPB_XANAC (Q8PJ28) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 405

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 246 LRDAYDDMLLDGVQPVRDTFHSLIVGTMKG 335
           L+DA ++ + D V  VRDTF+  I+GT+ G
Sbjct: 177 LKDALNEAMRDWVTNVRDTFY--IIGTVAG 204

>SOLI2_RALSO (O30920) Autoinducer synthesis protein solI|
          Length = 204

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 195 EYNTVIGS--LVQQRRPYLLRDAYDDMLLDGVQP 290
           E  T+ G   L+   RPYLL+D +  +L+ G+ P
Sbjct: 60  EGGTICGCARLLPTTRPYLLKDVFASLLMHGMPP 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,067,967
Number of Sequences: 219361
Number of extensions: 507336
Number of successful extensions: 1808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)