ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast12c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.007
2gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare str... 48 0.007
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.007
4gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare str... 48 0.007
5dbj|AK107380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.007
6dbj|AK107250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.007
7gb|AC127253.3| Mus musculus BAC clone RP24-281H12 from chromosom... 46 0.027
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.027
9dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.027
10dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.027
11gb|AC131038.6| Mus musculus chromosome 3, clone RP24-565B3, comp... 46 0.027
12dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 0.42
13ref|XM_479498.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.7
14gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 1.7
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 1.7
16dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 1.7
17dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
18dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
19dbj|AK110786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.7
20emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 1.7
21dbj|AK063620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.7
22gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 1.7
23ref|NM_189587.2| Oryza sativa (japonica cultivar-group), mRNA 38 6.5
24ref|XM_463235.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.5
25gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 38 6.5
26gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
27gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 6.5
28gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
29gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 6.5
30gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus st... 38 6.5
31gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 38 6.5
32ref|XM_780447.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 6.5
33emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 6.5
34gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 38 6.5
35emb|AJ002140.1|LSLESME Lycopersicon esculentum mRNA for DNA (cyt... 38 6.5
36gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 6.5
37gb|AC022240.10| Homo sapiens chromosome 11, clone RP11-231N3, co... 38 6.5
38gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, com... 38 6.5
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
41dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
42gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 gelda... 38 6.5
43dbj|AK110852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
44dbj|AK110441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.5
45gb|L26954.1|STMBLEANKA Streptomyces verticillus phleomycin/bleom... 38 6.5
46dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA... 38 6.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 87      cccgctccttcgccgcggcgccgc 110
               ||||||||||||||||||||||||
Sbjct: 9258096 cccgctccttcgccgcggcgccgc 9258119



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 97       cgccgcggcgccgccgcgg 115
                |||||||||||||||||||
Sbjct: 23589400 cgccgcggcgccgccgcgg 23589418
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>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032O19, from chromosome 3, complete sequence
          Length = 142248

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 87    cccgctccttcgccgcggcgccgc 110
             ||||||||||||||||||||||||
Sbjct: 28295 cccgctccttcgccgcggcgccgc 28272
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 87      cccgctccttcgccgcggcgccgc 110
               ||||||||||||||||||||||||
Sbjct: 9255929 cccgctccttcgccgcggcgccgc 9255952



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 97       cgccgcggcgccgccgcgg 115
                |||||||||||||||||||
Sbjct: 23582428 cgccgcggcgccgccgcgg 23582446
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>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0014A21, from chromosome 3, complete sequence
          Length = 134014

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 87    cccgctccttcgccgcggcgccgc 110
             ||||||||||||||||||||||||
Sbjct: 98157 cccgctccttcgccgcggcgccgc 98134
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>dbj|AK107380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C01, full
           insert sequence
          Length = 2282

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  cccgctccttcgccgcggcgccgc 110
           ||||||||||||||||||||||||
Sbjct: 496 cccgctccttcgccgcggcgccgc 519
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>dbj|AK107250.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G02, full
           insert sequence
          Length = 2512

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 87  cccgctccttcgccgcggcgccgc 110
           ||||||||||||||||||||||||
Sbjct: 412 cccgctccttcgccgcggcgccgc 435
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>gb|AC127253.3| Mus musculus BAC clone RP24-281H12 from chromosome 3, complete sequence
          Length = 156318

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 102   cggcgccgccgcggtttcggccggcggcctccgcg 136
             |||||| |||||||| |||||| ||||||||||||
Sbjct: 74365 cggcgctgccgcggtctcggcctgcggcctccgcg 74399
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 63      ccccaccgccgaaatgctccttcgcccgctccttcgccgcggcgccg 109
               |||| |||||||||||||||| ||| | ||||| ||||||| |||||
Sbjct: 5553493 ccccgccgccgaaatgctcctccgctccctcctccgccgcgccgccg 5553539



 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       ctccttcgccgcggcgccgc 110
                ||||||||||||||||||||
Sbjct: 28513292 ctccttcgccgcggcgccgc 28513273
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0081K20
          Length = 117287

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 63    ccccaccgccgaaatgctccttcgcccgctccttcgccgcggcgccg 109
             |||| |||||||||||||||| ||| | ||||| ||||||| |||||
Sbjct: 66578 ccccgccgccgaaatgctcctccgctccctcctccgccgcgccgccg 66624
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>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0431A02
          Length = 165038

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 63    ccccaccgccgaaatgctccttcgcccgctccttcgccgcggcgccg 109
             |||| |||||||||||||||| ||| | ||||| ||||||| |||||
Sbjct: 15185 ccccgccgccgaaatgctcctccgctccctcctccgccgcgccgccg 15231
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>gb|AC131038.6| Mus musculus chromosome 3, clone RP24-565B3, complete sequence
          Length = 161831

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 102    cggcgccgccgcggtttcggccggcggcctccgcg 136
              |||||| |||||||| |||||| ||||||||||||
Sbjct: 115134 cggcgctgccgcggtctcggcctgcggcctccgcg 115100
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 86      gcccgctccttcgccgcggcg 106
               |||||||||||||||||||||
Sbjct: 2326591 gcccgctccttcgccgcggcg 2326611



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 82      cttcgcccgctccttcgccgcgg 104
               ||||||||||| |||||||||||
Sbjct: 1113721 cttcgcccgctacttcgccgcgg 1113699
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>ref|XM_479498.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 928

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  ctccttcgccgcggcgccgc 110
           ||||||||||||||||||||
Sbjct: 756 ctccttcgccgcggcgccgc 737
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 103     ggcgccgccgcggtttcggccggc 126
               ||||||| ||||||||||||||||
Sbjct: 1437770 ggcgccgacgcggtttcggccggc 1437793
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      tcgccgcggcgccgccgcgg 115
               ||||||||||||||||||||
Sbjct: 4971994 tcgccgcggcgccgccgcgg 4972013



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 110     ccgcggtttcggccggcgg 128
               |||||||||||||||||||
Sbjct: 3672791 ccgcggtttcggccggcgg 3672809



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 80      tccttcgcccgctccttcgccgcggcg 106
               |||||| || |||||||||||||||||
Sbjct: 2645657 tccttcccctgctccttcgccgcggcg 2645683
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     cgccgcggtttcggccggcg 127
               ||||||||||||||||||||
Sbjct: 3098652 cgccgcggtttcggccggcg 3098633



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      cgagctcgaaaccctcttc 46
               |||||||||||||||||||
Sbjct: 3368769 cgagctcgaaaccctcttc 3368787
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>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0037D09
          Length = 140470

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ctccttcgccgcggcgccgc 110
             ||||||||||||||||||||
Sbjct: 79044 ctccttcgccgcggcgccgc 79025
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>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0618H09
          Length = 142306

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ctccttcgccgcggcgccgc 110
             ||||||||||||||||||||
Sbjct: 70833 ctccttcgccgcggcgccgc 70814
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>dbj|AK110786.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C07, full
           insert sequence
          Length = 1360

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  ctccttcgccgcggcgccgc 110
           ||||||||||||||||||||
Sbjct: 110 ctccttcgccgcggcgccgc 129
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 104     gcgccgccgcggtttcggccggcg 127
               |||||||||||||| |||||||||
Sbjct: 2565498 gcgccgccgcggttccggccggcg 2565475
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>dbj|AK063620.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E05, full
           insert sequence
          Length = 928

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  ctccttcgccgcggcgccgc 110
           ||||||||||||||||||||
Sbjct: 756 ctccttcgccgcggcgccgc 737
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 97      cgccgcggcgccgccgcggtttcggccg 124
               |||||| |||||||||||||| ||||||
Sbjct: 1555634 cgccgccgcgccgccgcggttgcggccg 1555607
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>ref|NM_189587.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1788

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   cgccgcggcgccgccgcgg 115
            |||||||||||||||||||
Sbjct: 1491 cgccgcggcgccgccgcgg 1509
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>ref|XM_463235.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1482

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 97  cgccgcggcgccgccgcgg 115
           |||||||||||||||||||
Sbjct: 617 cgccgcggcgccgccgcgg 635
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     gcagggacaggccgagctc 34
              |||||||||||||||||||
Sbjct: 619637 gcagggacaggccgagctc 619619
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>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03
             map E1419S, complete sequence
          Length = 150945

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    cgccgcggcgccgccgcgg 115
             |||||||||||||||||||
Sbjct: 37483 cgccgcggcgccgccgcgg 37501
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 94      cttcgccgcggcgccgccg 112
               |||||||||||||||||||
Sbjct: 3507090 cttcgccgcggcgccgccg 3507108



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 97      cgccgcggcgccgccgcgg 115
               |||||||||||||||||||
Sbjct: 1708588 cgccgcggcgccgccgcgg 1708570
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>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
             complete sequence
          Length = 178061

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    cgccgcggcgccgccgcgg 115
             |||||||||||||||||||
Sbjct: 42894 cgccgcggcgccgccgcgg 42876
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     cttcgccgcggcgccgccg 112
              |||||||||||||||||||
Sbjct: 315322 cttcgccgcggcgccgccg 315304
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>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427
             geldanamycin biosynthesis gene cluster, partial sequence
          Length = 75920

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    gccgcggcgccgccgcggt 116
             |||||||||||||||||||
Sbjct: 64589 gccgcggcgccgccgcggt 64607
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 105     cgccgccgcggtttcggccggcg 127
               |||||||||| ||||||||||||
Sbjct: 1304485 cgccgccgcgatttcggccggcg 1304507
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>ref|XM_780447.1| PREDICTED: Strongylocentrotus purpuratus similar to CG32156-PC,
            isoform C (LOC580387), mRNA
          Length = 1503

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 78   gctccttcgcccgctccttcgcc 100
            |||||||| ||||||||||||||
Sbjct: 1159 gctccttctcccgctccttcgcc 1137
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete
             sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    cttcgccgcggcgccgccg 112
             |||||||||||||||||||
Sbjct: 90035 cttcgccgcggcgccgccg 90017
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 102    cggcgccgccgcggtttcg 120
              |||||||||||||||||||
Sbjct: 742084 cggcgccgccgcggtttcg 742102
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>emb|AJ002140.1|LSLESME Lycopersicon esculentum mRNA for DNA (cytosine-5)-methyltransferase
          Length = 5377

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 39  ccctcttccgccgccctgc 57
           |||||||||||||||||||
Sbjct: 257 ccctcttccgccgccctgc 275
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 98      gccgcggcgccgccgcggt 116
               |||||||||||||||||||
Sbjct: 3657552 gccgcggcgccgccgcggt 3657570
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>gb|AC022240.10| Homo sapiens chromosome 11, clone RP11-231N3, complete sequence
          Length = 61851

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    cccgctccttcgccgcggc 105
             |||||||||||||||||||
Sbjct: 15300 cccgctccttcgccgcggc 15282
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>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence
          Length = 179357

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 87    cccgctccttcgccgcggc 105
             |||||||||||||||||||
Sbjct: 20742 cccgctccttcgccgcggc 20760
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 97       cgccgcggcgccgccgcgg 115
                |||||||||||||||||||
Sbjct: 19901730 cgccgcggcgccgccgcgg 19901712
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 97      cgccgcggcgccgccgcgg 115
               |||||||||||||||||||
Sbjct: 4421808 cgccgcggcgccgccgcgg 4421826
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>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0489A01
          Length = 137174

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    cgccgcggcgccgccgcgg 115
             |||||||||||||||||||
Sbjct: 81890 cgccgcggcgccgccgcgg 81908
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>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis
             gene cluster, partial sequence
          Length = 69644

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    gccgcggcgccgccgcggt 116
             |||||||||||||||||||
Sbjct: 56841 gccgcggcgccgccgcggt 56859
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>dbj|AK110852.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C07, full
            insert sequence
          Length = 1788

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   cgccgcggcgccgccgcgg 115
            |||||||||||||||||||
Sbjct: 1491 cgccgcggcgccgccgcgg 1509
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>dbj|AK110441.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-D04, full
            insert sequence
          Length = 2048

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   cgccgcggcgccgccgcgg 115
            |||||||||||||||||||
Sbjct: 1268 cgccgcggcgccgccgcgg 1286
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>gb|L26954.1|STMBLEANKA Streptomyces verticillus phleomycin/bleomycin binding protein and
           ankyrin homologue (ank) gene, complete cds
          Length = 1058

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 97  cgccgcggcgccgccgcgg 115
           |||||||||||||||||||
Sbjct: 772 cgccgcggcgccgccgcgg 754
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>dbj|D10491.1|RICATPB Oryza sativa (japonica cultivar-group) mRNA for mitochondrial
           F1-ATPase
          Length = 1929

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  ccgctccttcgccgcggcg 106
           |||||||||||||||||||
Sbjct: 179 ccgctccttcgccgcggcg 161


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 880,337
Number of Sequences: 3902068
Number of extensions: 880337
Number of successful extensions: 72313
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69020
Number of HSP's gapped (non-prelim): 3293
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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