ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast11h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476173.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 123 bits (62), Expect = 3e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 137 cgtgctgctcctgtgcagcccgtgcatggggcacctcatccctttcgccgagctggcgcg 196 ||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| ||||| Sbjct: 69 cgtgctgctgctgtgcagcccgtgcttgggccacctcatcccgttcgccgagctcgcgcg 128 Query: 197 ccggctcgtcgcggaccacggcctggccgccacg 230 ||| |||||||| ||||||||||| ||||||||| Sbjct: 129 ccgcctcgtcgccgaccacggcctcgccgccacg 162
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 123 bits (62), Expect = 3e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 137 cgtgctgctcctgtgcagcccgtgcatggggcacctcatccctttcgccgagctggcgcg 196 ||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| ||||| Sbjct: 22438 cgtgctgctgctgtgcagcccgtgcttgggccacctcatcccgttcgccgagctcgcgcg 22497 Query: 197 ccggctcgtcgcggaccacggcctggccgccacg 230 ||| |||||||| ||||||||||| ||||||||| Sbjct: 22498 ccgcctcgtcgccgaccacggcctcgccgccacg 22531
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 123 bits (62), Expect = 3e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 137 cgtgctgctcctgtgcagcccgtgcatggggcacctcatccctttcgccgagctggcgcg 196 ||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| ||||| Sbjct: 7067589 cgtgctgctgctgtgcagcccgtgcttgggccacctcatcccgttcgccgagctcgcgcg 7067648 Query: 197 ccggctcgtcgcggaccacggcctggccgccacg 230 ||| |||||||| ||||||||||| ||||||||| Sbjct: 7067649 ccgcctcgtcgccgaccacggcctcgccgccacg 7067682
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 188 gctggcgcgccggctcgtcgcggaccacg 216 ||||||||||||||||||||||| ||||| Sbjct: 1531491 gctggcgcgccggctcgtcgcggtccacg 1531463
>gb|AC023481.6| Homo sapiens chromosome 3 clone RP11-424H6 map 3p, complete sequence Length = 184065 Score = 46.1 bits (23), Expect = 0.048 Identities = 23/23 (100%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaa 27 ||||||||||||||||||||||| Sbjct: 137269 caacaacaaccaaaacacaacaa 137291
>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence Length = 151927 Score = 46.1 bits (23), Expect = 0.048 Identities = 23/23 (100%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaa 27 ||||||||||||||||||||||| Sbjct: 144675 caacaacaaccaaaacacaacaa 144653
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 gccgagctggcgcgccggctcg 204 |||||||||||||||||||||| Sbjct: 1540395 gccgagctggcgcgccggctcg 1540374 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cgccggcgagcgcacggcca 134 |||||||||||||||||||| Sbjct: 782527 cgccggcgagcgcacggcca 782546
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 gccgagctggcgcgccggctcg 204 |||||||||||||||||||||| Sbjct: 1919356 gccgagctggcgcgccggctcg 1919335
>gb|AC132948.3| Mus musculus BAC clone RP24-467P6 from chromosome 8, complete sequence Length = 166801 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaac 29 ||||||||||||||||| ||||||| Sbjct: 119962 caacaacaaccaaaacaaaacaaac 119938
>gb|AC122458.3| Mus musculus BAC clone RP24-270D10 from chromosome 8, complete sequence Length = 185268 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaac 29 ||||||||||||||||| ||||||| Sbjct: 2971 caacaacaaccaaaacaaaacaaac 2947
>gb|AC109253.9| Mus musculus, clone RP23-351D8, complete sequence Length = 254578 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 aacaacaaccaaaacacaacaaaca 30 |||||||||||||||| |||||||| Sbjct: 87373 aacaacaaccaaaacaaaacaaaca 87349
>emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chromosome X, complete sequence Length = 35468 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 aacaacaaccaaaacacaacaaaca 30 |||||||||||||||| |||||||| Sbjct: 27032 aacaacaaccaaaacaaaacaaaca 27008
>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence Length = 212654 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaac 29 ||||||||||||||||| ||||||| Sbjct: 183920 caacaacaaccaaaacaaaacaaac 183896
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 ccgagctggcgcgccggctcg 204 ||||||||||||||||||||| Sbjct: 1307140 ccgagctggcgcgccggctcg 1307120
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.75 Identities = 33/37 (89%) Strand = Plus / Minus Query: 168 cacctcatccctttcgccgagctggcgcgccggctcg 204 ||||||||||| | |||||||||||||| ||||||| Sbjct: 8092792 cacctcatcccgctggccgagctggcgcggcggctcg 8092756 Score = 42.1 bits (21), Expect = 0.75 Identities = 33/37 (89%) Strand = Plus / Minus Query: 168 cacctcatccctttcgccgagctggcgcgccggctcg 204 ||||||||||| | |||||||||||||| ||||||| Sbjct: 8018639 cacctcatcccgatggccgagctggcgcggcggctcg 8018603 Score = 40.1 bits (20), Expect = 2.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 183 gccgagctggcgcgccggctcgtcgcggaccacggc 218 |||||||||||||| || ||||||||| ||||||| Sbjct: 8051206 gccgagctggcgcggcgcctcgtcgcgttccacggc 8051241
>gb|AC154188.2| Mus musculus BAC clone RP24-455C11 from chromosome 16, complete sequence Length = 177978 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaac 29 ||||||||||||||||| ||||||| Sbjct: 120408 caacaacaaccaaaacaaaacaaac 120384
>gb|AF525490.2| Streptomyces griseus fredericamycin biosynthetic gene cluster, complete sequence Length = 33064 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Minus Query: 185 cgagctggcgcgccggctcgtcgcggacc 213 |||| ||||||||||||||| |||||||| Sbjct: 17736 cgaggtggcgcgccggctcggcgcggacc 17708
>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0503B05 Length = 156814 Score = 42.1 bits (21), Expect = 0.75 Identities = 33/37 (89%) Strand = Plus / Minus Query: 168 cacctcatccctttcgccgagctggcgcgccggctcg 204 ||||||||||| | |||||||||||||| ||||||| Sbjct: 80985 cacctcatcccgctggccgagctggcgcggcggctcg 80949 Score = 42.1 bits (21), Expect = 0.75 Identities = 33/37 (89%) Strand = Plus / Minus Query: 168 cacctcatccctttcgccgagctggcgcgccggctcg 204 ||||||||||| | |||||||||||||| ||||||| Sbjct: 6832 cacctcatcccgatggccgagctggcgcggcggctcg 6796 Score = 40.1 bits (20), Expect = 2.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 183 gccgagctggcgcgccggctcgtcgcggaccacggc 218 |||||||||||||| || ||||||||| ||||||| Sbjct: 39399 gccgagctggcgcggcgcctcgtcgcgttccacggc 39434
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 42.1 bits (21), Expect = 0.75 Identities = 33/37 (89%) Strand = Plus / Minus Query: 168 cacctcatccctttcgccgagctggcgcgccggctcg 204 ||||||||||| | |||||||||||||| ||||||| Sbjct: 142054 cacctcatcccgatggccgagctggcgcggcggctcg 142018
>dbj|AK105563.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B11, full insert sequence Length = 1694 Score = 42.1 bits (21), Expect = 0.75 Identities = 33/37 (89%) Strand = Plus / Plus Query: 168 cacctcatccctttcgccgagctggcgcgccggctcg 204 ||||||||||| | |||||||||||||| ||||||| Sbjct: 153 cacctcatcccgctggccgagctggcgcggcggctcg 189
>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete sequence Length = 196773 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 aacaacaaccaaaacacaacaaaca 30 |||||||||||||||| |||||||| Sbjct: 160822 aacaacaaccaaaacaaaacaaaca 160846
>emb|AL669824.13| Mouse DNA sequence from clone RP23-396G1 on chromosome 2, complete sequence Length = 139077 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Minus Query: 10 acaaccaaaacacaacaaacactctcctt 38 |||| ||||||| |||||||||||||||| Sbjct: 55904 acaaacaaaacaaaacaaacactctcctt 55876
>ref|NM_191586.2| Oryza sativa (japonica cultivar-group), mRNA Length = 5018 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagccgtcgccggcgagcgc 127 |||||||||||||||||||| Sbjct: 932 gagccgtcgccggcgagcgc 913
>gb|AC144767.4| Mus musculus BAC clone RP23-82F8 from chromosome 6, complete sequence Length = 229027 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 21370 caacaacaaccaaaacaaaacaaa 21347
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence Length = 164501 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ccggctcgtcgcggaccacggcct 220 ||||||||||||||||||| |||| Sbjct: 92907 ccggctcgtcgcggaccactgcct 92930
>gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, complete sequence Length = 223019 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 gcaacaacaaccaaaacacaacaaacac 31 ||||||||||||||||||| ||| |||| Sbjct: 145702 gcaacaacaaccaaaacaccacacacac 145675
>gb|AC131725.2| Mus musculus BAC clone RP23-129H16 from chromosome 5, complete sequence Length = 203437 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 81112 caacaacaaccaaaacaaaacaaa 81089
>gb|AC155074.12| Mus musculus chromosome 15, clone RP24-127H11, complete sequence Length = 184795 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 83594 caacaacaaccaaaacaaaacaaa 83617
>gb|AC124374.5| Mus musculus BAC clone RP24-567K8 from chromosome 5, complete sequence Length = 181395 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 106135 caacaacaaccaaaacaaaacaaa 106158
>emb|CT025529.7| Mouse DNA sequence from clone RP23-153E24 on chromosome 16, complete sequence Length = 187241 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 129239 caacaacaaccaaaacaaaacaaa 129216
>gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosome 19, complete sequence Length = 161150 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 69164 caacaacaaccaaaacacaa 69145
>gb|AC132473.3| Mus musculus BAC clone RP23-114F11 from chromosome 8, complete sequence Length = 162027 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 39653 caacaacaaccaaaacaaaacaaa 39630
>gb|AC117225.3| Mus musculus BAC clone RP23-366F3 from 19, complete sequence Length = 149854 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 2020 caacaacaaccaaaacacaa 2001
>gb|AC122037.2| Mus musculus BAC clone RP24-426D9 from 3, complete sequence Length = 185938 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 84641 caacaacaaccaaaacaaaacaaa 84618
>gb|AC004414.1| Homo sapiens PAC clone RP4-724E13 from 7, complete sequence Length = 115045 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaccaaaacacaacaaacac 31 |||||||||||||||||||| Sbjct: 41768 aaccaaaacacaacaaacac 41787
>gb|AC115731.11| Mus musculus chromosome 16, clone RP23-184A15, complete sequence Length = 228467 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 31771 caacaacaaccaaaacaaaacaaa 31748
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 195554 caacaacaaccaaaacaaaacaaa 195531
>gb|AC164633.2| Mus musculus chromosome 15, clone RP24-374C19, complete sequence Length = 157653 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 29705 caacaacaaccaaaacaaaacaaa 29682
>emb|CR450767.13| Zebrafish DNA sequence from clone DKEY-5D4 in linkage group 8, complete sequence Length = 66979 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aacaaccaaaacacaacaaa 28 |||||||||||||||||||| Sbjct: 11864 aacaaccaaaacacaacaaa 11845
>gb|AC140547.18| Medicago truncatula clone mth2-17p16, complete sequence Length = 123189 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 caaccaaaacacaacaaaca 30 |||||||||||||||||||| Sbjct: 53577 caaccaaaacacaacaaaca 53558
>gb|AC118590.11| Mus musculus chromosome 15, clone RP24-506N7, complete sequence Length = 155519 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 49426 caacaacaaccaaaacaaaacaaa 49449
>emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on chromosome 13 Contains a novel gene and a TAR DNA binding protein (TARDBP) pseudogene, the 5' UTR of a novel gene (FLJ21007) and 2 CpG islands, complete sequence Length = 226860 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 18406 caacaacaaccaaaacaaaacaaa 18429
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagccgtcgccggcgagcgc 127 |||||||||||||||||||| Sbjct: 2626746 gagccgtcgccggcgagcgc 2626727
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgagctggcgcgccggctcg 204 |||||||||||||||||||| Sbjct: 2643044 cgagctggcgcgccggctcg 2643063
>emb|AL121760.11|HSDJ968J1 Human DNA sequence from clone RP5-968J1 on chromosome 20 Contains a novel gene, ESTs, STSs, GSSs and a CpG island, complete sequence Length = 91937 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 |||||||||| ||||||||||||| Sbjct: 53345 caacaacaacaaaaacacaacaaa 53322
>emb|AL078584.17|HSJ245M18 Human DNA sequence from clone RP1-245M18 on chromosome 6p21.32-22.3 Contains the 5' end of the gene for chromosome 6 open reading frame 32 (PL48, DIFF40, DIFF48, KIAA0386), a cytochrome c oxidase polypeptide II pseudogene and a CpG island, complete sequence Length = 104770 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 58786 caacaacaaccaaaacaaaacaaa 58763
>gb|AC093176.6| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109H11, Complete Sequence, complete sequence Length = 192227 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 124700 caacaacaaccaaaacaaaacaaa 124723
>gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosome 6, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 42675 caacaacaaccaaaacaaaacaaa 42698
>gb|DQ120995.1| Hucho taimen clone ZB-5 microsatellite sequence Length = 166 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaacact 32 |||||||||| | ||||||||||||||| Sbjct: 90 caacaacaacaacaacacaacaaacact 63
>gb|DQ120987.1| Hucho taimen clone ZB-42 microsatellite sequence Length = 284 Score = 40.1 bits (20), Expect = 2.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaacact 32 |||||||||| | ||||||||||||||| Sbjct: 90 caacaacaacaacaacacaacaaacact 63
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttcgccgagctggcgcgccg 199 |||||||||||||||||||| Sbjct: 232090 ttcgccgagctggcgcgccg 232071
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttcgccgagctggcgcgccg 199 |||||||||||||||||||| Sbjct: 156238 ttcgccgagctggcgcgccg 156219
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ttcgccgagctggcgcgccg 199 |||||||||||||||||||| Sbjct: 79309 ttcgccgagctggcgcgccg 79290
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cgagctggcgcgccggctcg 204 |||||||||||||||||||| Sbjct: 258995 cgagctggcgcgccggctcg 258976
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the 3' end of the Col27a1 gene for procollagen type XXVII alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1, 2 and 3, an orosomucoid pseudogene, the gene for a novel protein similar to human AT-hook protein AKNA, gene 4933437N03Rik, the Whrn gene for whirlin and two CpG islands, complete sequence Length = 214370 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 49288 caacaacaaccaaaacacaa 49269
>emb|AL672175.7| Mouse DNA sequence from clone RP23-205A9 on chromosome 11 Contains the Nog gene for noggin, the 3' end of the gene for a novel protein (4932411E22Rik) and one CpG island, complete sequence Length = 212341 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 188161 caacaacaaccaaaacacaa 188180
>gb|AC117511.10| Homo sapiens 12 BAC RP11-545I15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 68568 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 57858 caacaacaaccaaaacacaa 57839
>gb|AC161570.6| Mus musculus chromosome 5, clone RP23-36O9, complete sequence Length = 228402 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 25540 caacaacaaccaaaacaaaacaaa 25517
>gb|AC157765.6| Mus musculus chromosome 3, clone RP24-318E20, complete sequence Length = 188662 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 42321 caacaacaaccaaaacaaaacaaa 42298
>gb|AC023790.21| Homo sapiens 12 BAC RP11-377D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91187 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 63847 caacaacaaccaaaacaaaacaaa 63824
>gb|AC145022.28| Medicago truncatula clone mth2-8m24, complete sequence Length = 108548 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 caaccaaaacacaacaaaca 30 |||||||||||||||||||| Sbjct: 12360 caaccaaaacacaacaaaca 12341
>gb|AC011131.6| Homo sapiens chromosome 8, clone RP11-351E7, complete sequence Length = 178705 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 111378 caacaacaaccaaaacaaaacaaa 111401
>gb|AF449447.1| Mus musculus C3H chromosome 3 hyplip1 region Length = 176641 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 39708 caacaacaaccaaaacaaaacaaa 39731
>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence Length = 247769 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 84711 caacaacaaccaaaacacaa 84730
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ccggctcgtcgcggaccacggcct 220 ||||||||||||||||||| |||| Sbjct: 12423592 ccggctcgtcgcggaccactgcct 12423615
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagccgtcgccggcgagcgc 127 |||||||||||||||||||| Sbjct: 3804602 gagccgtcgccggcgagcgc 3804583
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cgtcgcggaccacggcctgg 222 |||||||||||||||||||| Sbjct: 8031041 cgtcgcggaccacggcctgg 8031060
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gctggcgcgccggctcgtcg 207 |||||||||||||||||||| Sbjct: 2936571 gctggcgcgccggctcgtcg 2936552
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagccgtcgccggcgagcgc 127 |||||||||||||||||||| Sbjct: 78144 gagccgtcgccggcgagcgc 78125
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1115_A07 Length = 165126 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ccggctcgtcgcggaccacggcct 220 ||||||||||||||||||| |||| Sbjct: 27621 ccggctcgtcgcggaccactgcct 27644
>emb|BX649293.4| Mouse DNA sequence from clone RP23-360N18 on chromosome 2, complete sequence Length = 126043 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaa 24 |||||||||||||||||||| Sbjct: 36043 caacaacaaccaaaacacaa 36024
>dbj|AK121690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F24, full insert sequence Length = 5017 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagccgtcgccggcgagcgc 127 |||||||||||||||||||| Sbjct: 932 gagccgtcgccggcgagcgc 913
>dbj|AK072190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146F18, full insert sequence Length = 1004 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 ccggctcgtcgcggaccacggcct 220 ||||||||||||||||||| |||| Sbjct: 195 ccggctcgtcgcggaccactgcct 172
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tggcgcgccggctcgtcgcg 209 |||||||||||||||||||| Sbjct: 1000139 tggcgcgccggctcgtcgcg 1000120
>emb|AJ535079.1|OSA535079 Oryza sativa (japonica cultivar-group) mrp3 gene for MRP-like ABC transporter, exons 1-10 Length = 5514 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagccgtcgccggcgagcgc 127 |||||||||||||||||||| Sbjct: 863 gagccgtcgccggcgagcgc 844
>gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, complete sequence Length = 192344 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 |||||||||| ||||||||||||| Sbjct: 117011 caacaacaacaaaaacacaacaaa 116988
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete sequence Length = 190466 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 118575 caacaacaaccaaaacaaaacaaa 118552
>gb|AC015720.20| Homo sapiens chromosome 15, clone RP11-151H2, complete sequence Length = 174559 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caacaacaaccaaaacacaacaaa 28 ||||||||||||||||| |||||| Sbjct: 56366 caacaacaaccaaaacaaaacaaa 56389 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,660,951 Number of Sequences: 3902068 Number of extensions: 1660951 Number of successful extensions: 45299 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44096 Number of HSP's gapped (non-prelim): 1203 length of query: 230 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 208 effective length of database: 17,147,199,772 effective search space: 3566617552576 effective search space used: 3566617552576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
