ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast11h01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF031194.1|AF031194 Triticum aestivum S276 (S276) mRNA, complete cds Length = 1788 Score = 500 bits (252), Expect = e-138 Identities = 280/288 (97%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 1 ccctccctcctgaccaccccctcctcgcgctccagctaaatccacgccaccgatggcccg 60 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 70 cccttcctcctgaccacccc-tcctcgcgctccagctaaatccacgccaccgatggcccg 128 Query: 61 cacgggcctcgcggacgctacggcgccggacgccgacgcaatgccggccgccaccaagga 120 |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct: 129 cacgggcctcgcggacgcaacggcgccggaagccgacgcaatgccggccgccagcaagga 188 Query: 121 cgccgccgacgtgcgcatgatctccaccaaggagctgcaggcgcacgccgccgcggacga 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 cgccgccgacgtccgcatgatctccaccaaggagctgcaggcgcacgccgccgcggacga 248 Query: 181 cctctggatctccatctccggggacgtctacgacgtcacgccgtggctgcgctaccaccc 240 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 249 cctctggatctccatctccggggacgtctacgacgtcacgccctggctgcgccaccaccc 308 Query: 241 gggcggcgaggtcccgctcatcaccctcgccggccaggacgccaccga 288 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gggcggcgaggtcccgctcatcaccctcgccggccaggacgccaccga 356
>gb|BT009556.1| Triticum aestivum clone wre1.pk0004.c7:fis, full insert mRNA sequence Length = 1972 Score = 494 bits (249), Expect = e-137 Identities = 274/281 (97%), Gaps = 1/281 (0%) Strand = Plus / Plus Query: 8 tcctgaccaccccctcctcgcgctccagctaaatccacgccaccgatggcccgcacgggc 67 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 tcctgaccacccc-tcctcgcgctccagctaaatccacgccaccgatggcccgcacgggc 138 Query: 68 ctcgcggacgctacggcgccggacgccgacgcaatgccggccgccaccaaggacgccgcc 127 ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct: 139 ctcgcggacgcaacggcgccggaagccgacgcaatgccggccgccagcaaggacgccgcc 198 Query: 128 gacgtgcgcatgatctccaccaaggagctgcaggcgcacgccgccgcggacgacctctgg 187 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 199 gacgtccgcatgatctccaccaaggagctgcaggcgcacgctgccgcggacgacctctgg 258 Query: 188 atctccatctccggggacgtctacgacgtcacgccgtggctgcgctaccacccgggcggc 247 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 259 atctccatctccggggacgtctacgacgtcacgccgtggctgcgccaccacccgggcggc 318 Query: 248 gaggtcccgctcatcaccctcgccggccaggacgccaccga 288 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 gaggtcccgctcatcaccctcgccggccaggacgccaccga 359
>gb|AY103762.1| Zea mays PCO087385 mRNA sequence Length = 1764 Score = 159 bits (80), Expect = 6e-36 Identities = 146/168 (86%) Strand = Plus / Plus Query: 121 cgccgccgacgtgcgcatgatctccaccaaggagctgcaggcgcacgccgccgcggacga 180 ||||| ||||||||||||||||||| |||||||||| | || ||||| |||| ||||| Sbjct: 136 cgccggcgacgtgcgcatgatctcctccaaggagctccgcgctcacgcttccgccgacga 195 Query: 181 cctctggatctccatctccggggacgtctacgacgtcacgccgtggctgcgctaccaccc 240 ||||||||||||||||||||| ||||| |||||||||||||| ||||| | | ||||||| Sbjct: 196 cctctggatctccatctccggcgacgtgtacgacgtcacgccctggctcccccaccaccc 255 Query: 241 gggcggcgaggtcccgctcatcaccctcgccggccaggacgccaccga 288 ||||||||| ||||||| ||||||| || || |||||||||||||| Sbjct: 256 gggcggcgacctcccgcttctcaccctggcggggcaggacgccaccga 303
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 115 bits (58), Expect = 8e-23 Identities = 100/114 (87%) Strand = Plus / Plus Query: 175 ggacgacctctggatctccatctccggggacgtctacgacgtcacgccgtggctgcgcta 234 ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| | | Sbjct: 10285933 ggacgacctgtggatctccatctccggggacgtgtacgacgtcacggcgtgggtgcccca 10285992 Query: 235 ccacccgggcggcgaggtcccgctcatcaccctcgccggccaggacgccaccga 288 ||||||||||||||| |||||||| | || || || || |||||||||||||| Sbjct: 10285993 ccacccgggcggcgacatcccgctcctgacgctggcggggcaggacgccaccga 10286046
>dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_A10 Length = 95161 Score = 115 bits (58), Expect = 8e-23 Identities = 100/114 (87%) Strand = Plus / Plus Query: 175 ggacgacctctggatctccatctccggggacgtctacgacgtcacgccgtggctgcgcta 234 ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| | | Sbjct: 87082 ggacgacctgtggatctccatctccggggacgtgtacgacgtcacggcgtgggtgcccca 87141 Query: 235 ccacccgggcggcgaggtcccgctcatcaccctcgccggccaggacgccaccga 288 ||||||||||||||| |||||||| | || || || || |||||||||||||| Sbjct: 87142 ccacccgggcggcgacatcccgctcctgacgctggcggggcaggacgccaccga 87195
>dbj|AK058543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B11, full insert sequence Length = 1798 Score = 115 bits (58), Expect = 8e-23 Identities = 100/114 (87%) Strand = Plus / Plus Query: 175 ggacgacctctggatctccatctccggggacgtctacgacgtcacgccgtggctgcgcta 234 ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| | | Sbjct: 227 ggacgacctgtggatctccatctccggggacgtgtacgacgtcacggcgtgggtgcccca 286 Query: 235 ccacccgggcggcgaggtcccgctcatcaccctcgccggccaggacgccaccga 288 ||||||||||||||| |||||||| | || || || || |||||||||||||| Sbjct: 287 ccacccgggcggcgacatcccgctcctgacgctggcggggcaggacgccaccga 340
>gb|AC170742.3| Sorex araneus clone SA_Ba-580J7, complete sequence Length = 156998 Score = 46.1 bits (23), Expect = 0.061 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1 ccctccctcctgaccaccccctc 23 ||||||||||||||||||||||| Sbjct: 69426 ccctccctcctgaccaccccctc 69448
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 106 ggccgccaccaaggacgccgcc 127 |||||||||||||||||||||| Sbjct: 633029 ggccgccaccaaggacgccgcc 633050
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 acggcgccggacgccgacgcaatgc 104 ||||||||||| ||||||||||||| Sbjct: 4069106 acggcgccggatgccgacgcaatgc 4069082
>gb|AC164619.5| Mus musculus BAC clone RP23-82L19 from chromosome 18, complete sequence Length = 216368 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ccctccctcctgaccaccccctcct 25 |||||||||||||||| |||||||| Sbjct: 6988 ccctccctcctgaccaacccctcct 6964
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 cgcaatgccggccgccaccaa 117 ||||||||||||||||||||| Sbjct: 2852147 cgcaatgccggccgccaccaa 2852167
>gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, complete sequence Length = 270111 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ccctccctcctgaccaccccctcct 25 |||||||||||||||| |||||||| Sbjct: 195938 ccctccctcctgaccaacccctcct 195914
>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence Length = 167984 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 cctccctcctgaccaccccctcctc 26 |||||||||| |||||||||||||| Sbjct: 63080 cctccctcctcaccaccccctcctc 63056
>gb|AC110375.4| Mus musculus BAC clone RP23-409L20 from 18, complete sequence Length = 191505 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ccctccctcctgaccaccccctcct 25 |||||||||||||||| |||||||| Sbjct: 65475 ccctccctcctgaccaacccctcct 65451
>ref|XM_475444.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2625 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 cgggcggcgaggtcccgctcatca 263 ||||||||| |||||||||||||| Sbjct: 44 cgggcggcgcggtcccgctcatca 67
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cggcgccggacgccgacgca 100 |||||||||||||||||||| Sbjct: 2776654 cggcgccggacgccgacgca 2776635
>gb|AC101908.8| Mus musculus chromosome 1, clone RP24-275J1, complete sequence Length = 164826 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccctcctgaccaccccctcc 24 |||||||||||||||||||| Sbjct: 164330 ccctcctgaccaccccctcc 164349
>ref|XM_955513.1| Neurospora crassa OR74A hypothetical protein (NCU08924.1) partial mRNA Length = 1560 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgccggccaggacgccacc 286 |||||||||||||||||||| Sbjct: 161 tcgccggccaggacgccacc 180
>ref|XM_331315.1| Neurospora crassa OR74A hypothetical protein (NCU08924.1) partial mRNA Length = 1560 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgccggccaggacgccacc 286 |||||||||||||||||||| Sbjct: 161 tcgccggccaggacgccacc 180
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 cgggcggcgaggtcccgctcatca 263 ||||||||| |||||||||||||| Sbjct: 87149 cgggcggcgcggtcccgctcatca 87126
>gb|AC166819.2| Mus musculus BAC clone RP24-492L15 from chromosome 6, complete sequence Length = 199206 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ccctccctcctgaccaccccctcc 24 |||||||||||| ||||||||||| Sbjct: 159112 ccctccctcctggccaccccctcc 159089
>ref|XM_388796.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08620.1) partial mRNA Length = 417 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gccggccaggacgccaccga 288 |||||||||||||||||||| Sbjct: 148 gccggccaggacgccaccga 167
>gb|AC158580.3| Mus musculus chromosome 1, clone RP24-97G17, complete sequence Length = 159618 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccctcctgaccaccccctcc 24 |||||||||||||||||||| Sbjct: 76231 ccctcctgaccaccccctcc 76212
>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5' end of the PAX2 gene for paired box gene 2 and fifteen CpG islands, complete sequence Length = 187101 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 126820 gcaggcgcacgccgccgcgg 126801
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 catgatctccaccaaggagctgca 159 ||||||||||||| |||||||||| Sbjct: 268509 catgatctccacccaggagctgca 268486
>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10 Length = 96283 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcgccggccaggacgccacc 286 |||||||||||||||||||| Sbjct: 2425 tcgccggccaggacgccacc 2406
>ref|NM_003987.2| Homo sapiens paired box gene 2 (PAX2), transcript variant a, mRNA Length = 4276 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 124 gcaggcgcacgccgccgcgg 105
>ref|NM_000278.2| Homo sapiens paired box gene 2 (PAX2), transcript variant b, mRNA Length = 4207 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 124 gcaggcgcacgccgccgcgg 105
>ref|NM_003990.2| Homo sapiens paired box gene 2 (PAX2), transcript variant e, mRNA Length = 4257 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 124 gcaggcgcacgccgccgcgg 105
>ref|NM_003988.2| Homo sapiens paired box gene 2 (PAX2), transcript variant c, mRNA Length = 4290 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 124 gcaggcgcacgccgccgcgg 105
>ref|NM_003989.2| Homo sapiens paired box gene 2 (PAX2), transcript variant d, mRNA Length = 4188 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 124 gcaggcgcacgccgccgcgg 105
>gb|L09748.2|HUMPAX201 Homo sapiens paired-box protein (PAX2) gene, promoter and exon 1 Length = 7331 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 6666 gcaggcgcacgccgccgcgg 6647
>ref|XM_943683.1| PREDICTED: Homo sapiens hypothetical protein LOC649389 (LOC649389), mRNA Length = 531 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 62 gcaggcgcacgccgccgcgg 81
>ref|XM_932308.1| PREDICTED: Homo sapiens hypothetical protein LOC644690 (LOC644690), mRNA Length = 525 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 62 gcaggcgcacgccgccgcgg 81
>gb|DQ314862.1| Streptomyces hygroscopicus strain NRRL 2388 hygromycin A biosynthetic gene cluster, complete sequence Length = 39151 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cgccggccaggacgccaccg 287 |||||||||||||||||||| Sbjct: 20122 cgccggccaggacgccaccg 20103
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 gccggccgccaccaaggacgccgc 126 ||||||||||||| |||||||||| Sbjct: 529616 gccggccgccaccgaggacgccgc 529639
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccacccgggcggcgaggtcc 254 |||||||||||||||||||| Sbjct: 164497 ccacccgggcggcgaggtcc 164478
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aatccacgccaccgatggcc 58 |||||||||||||||||||| Sbjct: 17820453 aatccacgccaccgatggcc 17820472
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 cgggcggcgaggtcccgctcatca 263 ||||||||| |||||||||||||| Sbjct: 23697144 cgggcggcgcggtcccgctcatca 23697121
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 121 cgccgccgacgtgcgcatgatctccacc 148 ||||||||||||||||| | |||||||| Sbjct: 3096566 cgccgccgacgtgcgcacgctctccacc 3096539
>gb|AF515729.1| Homo sapiens PAX2 gene, promoter region and partial cds Length = 4158 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 3593 gcaggcgcacgccgccgcgg 3574
>dbj|AK120590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145N02, full insert sequence Length = 1700 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aatccacgccaccgatggcc 58 |||||||||||||||||||| Sbjct: 1393 aatccacgccaccgatggcc 1374
>dbj|AK106318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E03, full insert sequence Length = 2977 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 cgggcggcgaggtcccgctcatca 263 ||||||||| |||||||||||||| Sbjct: 97 cgggcggcgcggtcccgctcatca 120
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gagctgcaggcgcacgccgc 171 |||||||||||||||||||| Sbjct: 543694 gagctgcaggcgcacgccgc 543713
>gb|U45245.1|HSPAXTWO01 Homo sapiens paired-box protein PAX2 (PAX2) gene, promoter and exon 1 Length = 1791 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gcaggcgcacgccgccgcgg 176 |||||||||||||||||||| Sbjct: 1126 gcaggcgcacgccgccgcgg 1107
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aatccacgccaccgatggcc 58 |||||||||||||||||||| Sbjct: 17746772 aatccacgccaccgatggcc 17746791
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aatccacgccaccgatggcc 58 |||||||||||||||||||| Sbjct: 39651 aatccacgccaccgatggcc 39670
>gb|AC116456.12| Homo sapiens chromosome 11, clone RP11-236J17, complete sequence Length = 146502 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ccccctcctcgcgctccagc 36 |||||||||||||||||||| Sbjct: 45618 ccccctcctcgcgctccagc 45637 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,887,129 Number of Sequences: 3902068 Number of extensions: 1887129 Number of successful extensions: 43746 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42627 Number of HSP's gapped (non-prelim): 1118 length of query: 288 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 266 effective length of database: 17,147,199,772 effective search space: 4561155139352 effective search space used: 4561155139352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
