ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast11g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 458 e-126
2emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 46 0.049
3ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript ... 44 0.19
4ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript ... 44 0.19
5ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript ... 44 0.19
6gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50... 44 0.19
7gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA 44 0.19
8gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 44 0.19
9gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 44 0.19
10gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.19
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
12dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
13ref|XM_483633.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.0
14gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 3.0
15ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute c... 40 3.0
16gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome... 40 3.0
17emb|CR450753.6| Zebrafish DNA sequence from clone DKEY-225F3 in ... 40 3.0
18gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cance... 40 3.0
19gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Can... 40 3.0
20gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein gluco... 40 3.0
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
23dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
24dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
25dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
26gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, comp... 40 3.0
27dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
28gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 3.0
29emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chr... 40 3.0

>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
           insert sequence
          Length = 1094

 Score =  458 bits (231), Expect = e-126
 Identities = 231/231 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 60

                                                                       
Query: 64  gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 120

                                                                       
Query: 124 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 180

                                                              
Query: 184 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtc 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtc 231



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 46.1 bits (23), Expect = 0.049
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 115   ctgctgatggtgccgctcctgctcgcc 141
             ||||||||||||||||| |||||||||
Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628



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>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151),
            mRNA
          Length = 2463

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 112  gtgctgctgatggtgccgctcctgct 137
            |||||||||||||||| |||||||||
Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841



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>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151),
            mRNA
          Length = 2212

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 112  gtgctgctgatggtgccgctcctgct 137
            |||||||||||||||| |||||||||
Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590



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>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151),
            mRNA
          Length = 2766

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 112  gtgctgctgatggtgccgctcctgct 137
            |||||||||||||||| |||||||||
Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144



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>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
              BACR07P02, complete sequence
          Length = 160920

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 112    gtgctgctgatggtgccgctcctgct 137
              |||||||||||||||| |||||||||
Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991



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>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA
          Length = 2337

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 112  gtgctgctgatggtgccgctcctgct 137
            |||||||||||||||| |||||||||
Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601



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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
             BACR03K23, complete sequence
          Length = 160346

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 112   gtgctgctgatggtgccgctcctgct 137
             |||||||||||||||| |||||||||
Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660



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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 112    gtgctgctgatggtgccgctcctgct 137
              |||||||||||||||| |||||||||
Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 49      aacgaagcgcggcacgcaatggcgcc 74
               ||||||||||| ||||||||||||||
Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 80       cgtcgtctccactgccggcgt 100
                |||||||||||||||||||||
Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355



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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     cgtcgtctccactgccggcgt 100
              |||||||||||||||||||||
Sbjct: 101881 cgtcgtctccactgccggcgt 101861



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>ref|XM_483633.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1327

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 126 gccgctcctgctcgccatggcgcg 149
           |||||| |||||||||||||||||
Sbjct: 95  gccgctgctgctcgccatggcgcg 72



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    ccgctgctcgtgctgctgat 122
              ||||||||||||||||||||
Sbjct: 167055 ccgctgctcgtgctgctgat 167036



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>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13,
           member 3 (Sodium-dependent high-affinity dicarboxylate
           transporter 2) (Na(+)/dicarboxylate cotransporter 3)
           (NaDC-3) (hNaDC3) (LOC485910), mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 105 gctgctcgtgctgctgatggtgccgctc 132
           |||||||||||||||| ||| |||||||
Sbjct: 48  gctgctcgtgctgctgttggcgccgctc 75



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>gb|AC151265.3| Mus musculus BAC clone RP24-372H7 from chromosome 17, complete sequence
          Length = 191739

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     catgcatgcaaacaaatcac 22
             ||||||||||||||||||||
Sbjct: 11896 catgcatgcaaacaaatcac 11877



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>emb|CR450753.6| Zebrafish DNA sequence from clone DKEY-225F3 in linkage group 22,
             complete sequence
          Length = 160631

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gcatgcatgcaaacaaatca 21
             ||||||||||||||||||||
Sbjct: 75388 gcatgcatgcaaacaaatca 75369



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>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 12446

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    tgcatgcaaacaaatcacta 24
            ||||||||||||||||||||
Sbjct: 1760 tgcatgcaaacaaatcacta 1779



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>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169964

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tgcatgcaaacaaatcacta 24
              ||||||||||||||||||||
Sbjct: 169725 tgcatgcaaacaaatcacta 169744



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>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene,
            complete sequence; and unknown genes
          Length = 7718

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  gtgctgctgatggtgccgct 131
            ||||||||||||||||||||
Sbjct: 5917 gtgctgctgatggtgccgct 5936



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 83      cgtctccactgccggcgtctccgctgct 110
               |||| |||| ||||||||||||||||||
Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 83      cgtctccactgccggcgtctccgctgct 110
               |||| |||| ||||||||||||||||||
Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 126      gccgctcctgctcgccatggcgcg 149
                |||||| |||||||||||||||||
Sbjct: 27371603 gccgctgctgctcgccatggcgcg 27371626



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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 83    cgtctccactgccggcgtctccgctgct 110
             |||| |||| ||||||||||||||||||
Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 83   cgtctccactgccggcgtctccgctgct 110
            |||| |||| ||||||||||||||||||
Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863



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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0638A12
          Length = 140731

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 83     cgtctccactgccggcgtctccgctgct 110
              |||| |||| ||||||||||||||||||
Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359



 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 83    cgtctccactgccggcgtctccgctgct 110
             |||| |||| ||||||||||||||||||
Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368



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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   gccgctcctgctcgccatggcgcg 149
             |||||| |||||||||||||||||
Sbjct: 73130 gccgctgctgctcgccatggcgcg 73153



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>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence
          Length = 118313

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   gtgctgctgatggtgccgct 131
             ||||||||||||||||||||
Sbjct: 94972 gtgctgctgatggtgccgct 94991



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>dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full
           insert sequence
          Length = 1327

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 126 gccgctcctgctcgccatggcgcg 149
           |||||| |||||||||||||||||
Sbjct: 95  gccgctgctgctcgccatggcgcg 72



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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ctgccggcgtctccgctgct 110
             ||||||||||||||||||||
Sbjct: 21719 ctgccggcgtctccgctgct 21738



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>emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chromosome 17, complete
             sequence
          Length = 173998

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     catgcatgcaaacaaatcac 22
             ||||||||||||||||||||
Sbjct: 88377 catgcatgcaaacaaatcac 88358


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,459,148
Number of Sequences: 3902068
Number of extensions: 1459148
Number of successful extensions: 32067
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31861
Number of HSP's gapped (non-prelim): 206
length of query: 234
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 212
effective length of database: 17,147,199,772
effective search space: 3635206351664
effective search space used: 3635206351664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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