ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast11d12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 331 bits (167), Expect = 9e-88 Identities = 209/223 (93%) Strand = Plus / Minus Query: 122 ggcgccgaacccgtacgccttcacgtgcgagctcccccactcgatctacgcgctggcctt 181 ||||| ||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| Sbjct: 27927642 ggcgcagaacccgaacgccttcacctgcgagctgccgcactccatctacgcgctggcctt 27927583 Query: 182 ctccccctccgcgcccgtcctcgccgccgggagcttcctcgaggacctccacaaccgcgt 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 27927582 ctccccctccgcgcccgtcctcgccgccggcagcttcctcgaggacctccacaaccgcgt 27927523 Query: 242 ctccctcctctgcttcgactccgtccaccccaccgccgcctccttccgcaccgtcccctc 301 ||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| | Sbjct: 27927522 ctccctcctctccttcgaccccgtccaccccaccgccgcctccttccgcgccctccccgc 27927463 Query: 302 cctctccttcgaccacccgtacccgcccaccaagctccagttc 344 ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 27927462 gctctccttcgaccacccctacccgcccaccaagctccagttc 27927420 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 302 cctctccttcgaccacccgtacccgcccaccaag 335 |||| ||||||||||||| ||||| ||||||||| Sbjct: 19198973 cctcaccttcgaccacccctaccctcccaccaag 19198940 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 91 cggcggccgcctcgccggcgggggcggacgcggcgc 126 ||||||||||| || |||||| ||||| |||||||| Sbjct: 7365041 cggcggccgccgcggcggcggcggcggccgcggcgc 7365076
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 331 bits (167), Expect = 9e-88 Identities = 209/223 (93%) Strand = Plus / Minus Query: 122 ggcgccgaacccgtacgccttcacgtgcgagctcccccactcgatctacgcgctggcctt 181 ||||| ||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| Sbjct: 55094 ggcgcagaacccgaacgccttcacctgcgagctgccgcactccatctacgcgctggcctt 55035 Query: 182 ctccccctccgcgcccgtcctcgccgccgggagcttcctcgaggacctccacaaccgcgt 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 55034 ctccccctccgcgcccgtcctcgccgccggcagcttcctcgaggacctccacaaccgcgt 54975 Query: 242 ctccctcctctgcttcgactccgtccaccccaccgccgcctccttccgcaccgtcccctc 301 ||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| | Sbjct: 54974 ctccctcctctccttcgaccccgtccaccccaccgccgcctccttccgcgccctccccgc 54915 Query: 302 cctctccttcgaccacccgtacccgcccaccaagctccagttc 344 ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 54914 gctctccttcgaccacccctacccgcccaccaagctccagttc 54872
>dbj|AK112090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H12, full insert sequence Length = 1666 Score = 331 bits (167), Expect = 9e-88 Identities = 209/223 (93%) Strand = Plus / Plus Query: 122 ggcgccgaacccgtacgccttcacgtgcgagctcccccactcgatctacgcgctggcctt 181 ||||| ||||||| |||||||||| |||||||| || ||||| ||||||||||||||||| Sbjct: 237 ggcgcagaacccgaacgccttcacctgcgagctgccgcactccatctacgcgctggcctt 296 Query: 182 ctccccctccgcgcccgtcctcgccgccgggagcttcctcgaggacctccacaaccgcgt 241 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 297 ctccccctccgcgcccgtcctcgccgccggcagcttcctcgaggacctccacaaccgcgt 356 Query: 242 ctccctcctctgcttcgactccgtccaccccaccgccgcctccttccgcaccgtcccctc 301 ||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| | Sbjct: 357 ctccctcctctccttcgaccccgtccaccccaccgccgcctccttccgcgccctccccgc 416 Query: 302 cctctccttcgaccacccgtacccgcccaccaagctccagttc 344 ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 417 gctctccttcgaccacccctacccgcccaccaagctccagttc 459
>gb|AY115485.1| Zea mays anthocyanin biosynthetic gene regulator PAC1 (pac1) gene, complete cds Length = 8239 Score = 281 bits (142), Expect = 7e-73 Identities = 202/222 (90%) Strand = Plus / Plus Query: 124 cgccgaacccgtacgccttcacgtgcgagctcccccactcgatctacgcgctggccttct 183 ||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct: 3372 cgccgaacccgcacgccttcacctgcgagctcccgcactcgatctacgcgctcgccttct 3431 Query: 184 ccccctccgcgcccgtcctcgccgccgggagcttcctcgaggacctccacaaccgcgtct 243 ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 3432 cccccgtcgcgcccgtcctcgcctccggcagcttcctcgaggacctccacaaccgcgtct 3491 Query: 244 ccctcctctgcttcgactccgtccaccccaccgccgcctccttccgcaccgtcccctccc 303 |||| |||| ||||||| |||||| |||| ||||||||||||||||| || |||| | | Sbjct: 3492 ccctgctctccttcgaccccgtccgcccctccgccgcctccttccgcgccctcccggcgc 3551 Query: 304 tctccttcgaccacccgtacccgcccaccaagctccagttca 345 |||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 3552 tctccttcgaccacccttacccacccaccaagctccagttca 3593
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 89.7 bits (45), Expect = 6e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 182 ctccccctccgcgcccgtcctcgccgccgggagcttcctcgaggacctccacaaccgcgt 241 |||||| |||||||||||||||| |||||| | ||||||||||||||||||||||| ||| Sbjct: 9757015 ctccccgtccgcgcccgtcctcgtcgccggtaacttcctcgaggacctccacaaccacgt 9757074 Query: 242 ctccc 246 ||||| Sbjct: 9757075 ctccc 9757079 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 tccccctccgcgcccgtcctcgccg 207 |||||||||||||||||| |||||| Sbjct: 21409845 tccccctccgcgcccgtcttcgccg 21409869
>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0040N23 Length = 101061 Score = 89.7 bits (45), Expect = 6e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 182 ctccccctccgcgcccgtcctcgccgccgggagcttcctcgaggacctccacaaccgcgt 241 |||||| |||||||||||||||| |||||| | ||||||||||||||||||||||| ||| Sbjct: 29434 ctccccgtccgcgcccgtcctcgtcgccggtaacttcctcgaggacctccacaaccacgt 29493 Query: 242 ctccc 246 ||||| Sbjct: 29494 ctccc 29498
>gb|AF220203.1|AF220203 Malus domestica Ttg1-like protein mRNA, complete cds Length = 1493 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 301 ccctctccttcgaccacccgtacccgcccaccaagctc 338 ||||||||||||||||||| || ||||||||||||||| Sbjct: 298 ccctctccttcgaccacccttatccgcccaccaagctc 335
>ref|NM_001038125.1| Bos taurus WD repeat domain 68 (WDR68), mRNA Length = 1553 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Plus Query: 307 ccttcgaccacccgtacccgcccaccaagctc 338 ||||||||||||||||||| ||||||||||| Sbjct: 425 ccttcgaccacccgtaccccaccaccaagctc 456
>gb|BC109703.1| Bos taurus cDNA clone MGC:134591 IMAGE:8061709, complete cds Length = 1553 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Plus Query: 307 ccttcgaccacccgtacccgcccaccaagctc 338 ||||||||||||||||||| ||||||||||| Sbjct: 425 ccttcgaccacccgtaccccaccaccaagctc 456
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Plus Query: 88 cgtcggcggccgcctcgccggcgg 111 |||||||||||||||||||||||| Sbjct: 68953 cgtcggcggccgcctcgccggcgg 68976
>ref|NM_196692.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBb0016G17.21), mRNA Length = 1575 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Minus Query: 99 gcctcgccggcgggggcggacgcggcg 125 ||||||||||||| ||||||||||||| Sbjct: 527 gcctcgccggcggcggcggacgcggcg 501
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Minus Query: 78 aagccgacgccgtcggcggccgc 100 ||||||||||||||||||||||| Sbjct: 49908 aagccgacgccgtcggcggccgc 49886
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcggcg 125 ||||||||||||| ||||||||||||| Sbjct: 138892 gcctcgccggcggcggcggacgcggcg 138918
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcggcg 125 ||||||||||||| ||||||||||||| Sbjct: 15285193 gcctcgccggcggcggcggacgcggcg 15285219
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcggcg 125 ||||||||||||| ||||||||||||| Sbjct: 2556 gcctcgccggcggcggcggacgcggcg 2582
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcggcg 125 ||||||||||||| ||||||||||||| Sbjct: 15293434 gcctcgccggcggcggcggacgcggcg 15293460
>ref|XM_466030.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1236 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 302 cctctccttcgaccacccgtacccgcccaccaag 335 |||| ||||||||||||| ||||| ||||||||| Sbjct: 264 cctcaccttcgaccacccctaccctcccaccaag 297
>gb|AY339884.1| Zea mays WD40 repeat protein (mp1) gene, complete cds Length = 2965 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 302 cctctccttcgaccacccgtacccgcccaccaag 335 |||| |||||||||| | |||||||||||||||| Sbjct: 1708 cctcaccttcgaccatcagtacccgcccaccaag 1741
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 302 cctctccttcgaccacccgtacccgcccaccaag 335 |||| ||||||||||||| ||||| ||||||||| Sbjct: 97222 cctcaccttcgaccacccctaccctcccaccaag 97189
>dbj|AB059642.1| Perilla frutescens mRNA for putative regulatory protein in anthocyanin biosynthesis, complete cds Length = 1410 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Plus Query: 292 ccgtcccctccctctccttcgaccacccgtaccc 325 ||||||| || ||||||||||||||||| ||||| Sbjct: 226 ccgtcccttctctctccttcgaccacccttaccc 259
>ref|NM_184763.1| Oryza sativa (japonica cultivar-group), mRNA Length = 405 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 ctccccctccgcgcccgtcctcgcc 206 ||||||||||||| ||||||||||| Sbjct: 298 ctccccctccgcgaccgtcctcgcc 322
>gb|BC023113.1| Mus musculus zinc finger protein 364, mRNA (cDNA clone MGC:28329 IMAGE:4015975), complete cds Length = 2287 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 155 gcctcggcggcgggggcggacgcgg 179
>ref|NM_026406.2| Mus musculus zinc finger protein 364 (Zfp364), mRNA Length = 2287 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 155 gcctcggcggcgggggcggacgcgg 179
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 ctccccctccgcgcccgtcctcgcc 206 ||||||||||||| ||||||||||| Sbjct: 20347019 ctccccctccgcgaccgtcctcgcc 20346995 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tcgccggcgggggcggacgcggcg 125 |||||||||| ||||||||||||| Sbjct: 34948010 tcgccggcggcggcggacgcggcg 34948033 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 tcgccggcgggggcggacgcggcgccga 129 |||||||||| ||||| ||||||||||| Sbjct: 30985175 tcgccggcggtggcgggcgcggcgccga 30985202
>ref|XM_978389.1| PREDICTED: Mus musculus zinc finger protein 364 (Zfp364), mRNA Length = 2990 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 439 gcctcggcggcgggggcggacgcgg 463
>ref|XM_989338.1| PREDICTED: Mus musculus zinc finger protein 364 (Zfp364), mRNA Length = 873 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 10 gcctcggcggcgggggcggacgcgg 34
>gb|AC112261.4| Mus musculus BAC clone RP23-204O17 from 3, complete sequence Length = 186290 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 52774 gcctcggcggcgggggcggacgcgg 52750
>emb|AL139251.13| Human DNA sequence from clone RP4-656M7 on chromosome 1p11.1-13.1 Contains the 5' end of the PHGDH gene for phosphoglycerate dehydrogenase, complete sequence Length = 52935 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 cctccctctccttcgaccacccgta 322 |||||||| |||||||||||||||| Sbjct: 3680 cctccctccccttcgaccacccgta 3656
>emb|AJ586861.1| Matthiola incana partial ttg1 gene for transparenta testa glabra 1 protein, exons 1-2, strain 04 Length = 2155 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 202 tcgccgccgggagcttcctcgagga 226 |||||| |||||||||||||||||| Sbjct: 83 tcgccgtcgggagcttcctcgagga 107
>dbj|AK131966.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410167L06 product:zinc finger protein 364, full insert sequence Length = 1914 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 128 gcctcggcggcgggggcggacgcgg 152
>dbj|AK159772.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420030L14 product:zinc finger protein 364, full insert sequence Length = 2150 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 101 gcctcggcggcgggggcggacgcgg 125
>dbj|AK008329.1| Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010107A21 product:hypothetical RING finger containing protein, full insert sequence Length = 1920 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 62 gcctcggcggcgggggcggacgcgg 86
>dbj|AK042216.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630071N02 product:hypothetical RING finger containing protein, full insert sequence Length = 2743 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 148 gcctcggcggcgggggcggacgcgg 172
>dbj|AK011584.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610028E05 product:hypothetical RING finger containing protein, full insert sequence Length = 2192 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 138 gcctcggcggcgggggcggacgcgg 162
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 ctccccctccgcgcccgtcctcgcc 206 ||||||||||||| ||||||||||| Sbjct: 142326 ctccccctccgcgaccgtcctcgcc 142302
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 ctccccctccgcgcccgtcctcgcc 206 ||||||||||||| ||||||||||| Sbjct: 20340048 ctccccctccgcgaccgtcctcgcc 20340024 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tcgccggcgggggcggacgcggcg 125 |||||||||| ||||||||||||| Sbjct: 35038082 tcgccggcggcggcggacgcggcg 35038105 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 tcgccggcgggggcggacgcggcgccga 129 |||||||||| ||||| ||||||||||| Sbjct: 31075698 tcgccggcggtggcgggcgcggcgccga 31075725
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 cggcgccgaacccgtacgcct 141 ||||||||||||||||||||| Sbjct: 3583940 cggcgccgaacccgtacgcct 3583920 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 accacccgtacccgcccacc 332 |||||||||||||||||||| Sbjct: 8797797 accacccgtacccgcccacc 8797816
>gb|AE004520.1| Pseudomonas aeruginosa PAO1, section 81 of 529 of the complete genome Length = 12217 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cgacgccgtcggcggccgcct 102 ||||||||||||||||||||| Sbjct: 9727 cgacgccgtcggcggccgcct 9707
>ref|XM_342300.2| PREDICTED: Rattus norvegicus zinc finger protein 364 (predicted) (Zfp364_predicted), mRNA Length = 2183 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcctcgccggcgggggcggacgcgg 123 |||||| |||||||||||||||||| Sbjct: 147 gcctcggcggcgggggcggacgcgg 171
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 tccccctccgcgcccgtcctcgccg 207 |||||||||||||||||| |||||| Sbjct: 26950 tccccctccgcgcccgtcttcgccg 26974
>emb|AJ341063.1|HSA341063 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WF11RS Length = 845 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 tccccctccgcgcccgtcctc 203 ||||||||||||||||||||| Sbjct: 106 tccccctccgcgcccgtcctc 86
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cggcgccgaacccgtacgcct 141 ||||||||||||||||||||| Sbjct: 53865 cggcgccgaacccgtacgcct 53885
>gb|BC107918.1| Rattus norvegicus cDNA clone MGC:125029 IMAGE:7458016, complete cds Length = 1490 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ccaccgccgcctccttccgc 290 |||||||||||||||||||| Sbjct: 293 ccaccgccgcctccttccgc 274
>ref|XM_493955.1| Oryza sativa (japonica cultivar-group), Ozsa8020 predicted mRNA Length = 1587 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cggccgcctcgccggcgggggcgg 117 |||||||||||||||||| ||||| Sbjct: 24 cggccgcctcgccggcggcggcgg 47
>ref|XM_508224.1| PREDICTED: Pan troglodytes similar to gene responsible for long QT syndrome (LOC450957), mRNA Length = 15621 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gcccaccaagctccagttca 345 |||||||||||||||||||| Sbjct: 8373 gcccaccaagctccagttca 8392
>ref|NM_192170.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1614 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tcggcggccgcctcgccggcgggg 113 |||||| ||||||||||||||||| Sbjct: 434 tcggcgtccgcctcgccggcgggg 457
>ref|XM_470361.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1158 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tcgccggcgggggcggacgcggcg 125 |||||||||| ||||||||||||| Sbjct: 616 tcgccggcggcggcggacgcggcg 639
>ref|NM_188199.1| Oryza sativa (japonica cultivar-group), mRNA Length = 312 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 gacgccgtcggcggccgcctcgccggcg 110 ||||||| ||||| |||||||||||||| Sbjct: 44 gacgccgccggcgcccgcctcgccggcg 17
>gb|BC086341.1| Rattus norvegicus cDNA clone MGC:105945 IMAGE:7301779, complete cds Length = 1205 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ccaccgccgcctccttccgc 290 |||||||||||||||||||| Sbjct: 57 ccaccgccgcctccttccgc 38
>gb|AC120532.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0054A24 map S1559, complete sequence Length = 69349 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcggcggccgcctcgccggc 109 |||||||||||||||||||| Sbjct: 18946 tcggcggccgcctcgccggc 18927
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gcggccgcctcgccggcggg 112 |||||||||||||||||||| Sbjct: 1111407 gcggccgcctcgccggcggg 1111426
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcggccgcctcgccggcggg 112 |||||||||||||||||||| Sbjct: 2087455 gcggccgcctcgccggcggg 2087436
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ggacgcggcgccgaacccgtacgc 139 ||||||||||||| |||||||||| Sbjct: 91120 ggacgcggcgccggacccgtacgc 91143
>ref|XM_129808.7| PREDICTED: Mus musculus RIKEN cDNA 2010300C02 gene (2010300C02Rik), mRNA Length = 4656 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 265 ccggcgggggcggacgcggc 246
>ref|XM_843662.1| PREDICTED: Canis familiaris P2X2 purinoceptor, transcript variant 2 (P2X2), mRNA Length = 1676 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 25 ccggcgggggcggacgcggc 44
>ref|XM_851837.1| PREDICTED: Canis familiaris P2X2 purinoceptor, transcript variant 6 (P2X2), mRNA Length = 1248 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 25 ccggcgggggcggacgcggc 44
>ref|XM_851798.1| PREDICTED: Canis familiaris P2X2 purinoceptor, transcript variant 5 (P2X2), mRNA Length = 1185 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 25 ccggcgggggcggacgcggc 44
>ref|XM_851755.1| PREDICTED: Canis familiaris P2X2 purinoceptor, transcript variant 4 (P2X2), mRNA Length = 1604 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 25 ccggcgggggcggacgcggc 44
>ref|XM_534633.2| PREDICTED: Canis familiaris P2X2 purinoceptor, transcript variant 1 (P2X2), mRNA Length = 1460 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 25 ccggcgggggcggacgcggc 44
>ref|XM_851674.1| PREDICTED: Canis familiaris P2X2 purinoceptor, transcript variant 3 (P2X2), mRNA Length = 1400 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 25 ccggcgggggcggacgcggc 44
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cggcgggggcggacgcggcg 125 |||||||||||||||||||| Sbjct: 31921 cggcgggggcggacgcggcg 31940
>gb|AC123068.4| Mus musculus BAC clone RP23-21P10 from 1, complete sequence Length = 221464 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ccggcgggggcggacgcggc 124 |||||||||||||||||||| Sbjct: 86273 ccggcgggggcggacgcggc 86292
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 102 tcgccggcgggggcggacgcggcgccga 129 |||||||||| ||||| ||||||||||| Sbjct: 110889 tcgccggcggtggcgggcgcggcgccga 110862
>emb|BX056357.1|CNS09FND Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC35CD11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 568 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 cgccgaacccgtacgccttcacgt 147 ||||||| |||||||||||||||| Sbjct: 230 cgccgaaaccgtacgccttcacgt 253
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gcggccgcctcgccggcggg 112 |||||||||||||||||||| Sbjct: 2287356 gcggccgcctcgccggcggg 2287375
>gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, complete sequence Length = 168727 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ctccccctccgcgcccgtcc 201 |||||||||||||||||||| Sbjct: 51716 ctccccctccgcgcccgtcc 51735
>gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, complete sequence Length = 167851 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ctccccctccgcgcccgtcc 201 |||||||||||||||||||| Sbjct: 8302 ctccccctccgcgcccgtcc 8321
>gb|DP000059.1| Carollia perspicillata target 117 genomic scaffold Length = 359132 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cgcccgtcctcgccgccggg 212 |||||||||||||||||||| Sbjct: 301408 cgcccgtcctcgccgccggg 301389
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ggcggccgcctcgccggcgg 111 |||||||||||||||||||| Sbjct: 961131 ggcggccgcctcgccggcgg 961112
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcggcggccgcctcgccggc 109 |||||||||||||||||||| Sbjct: 3837320 tcggcggccgcctcgccggc 3837301
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 gacgccgtcggcggccgcctcgccggcg 110 ||||||| ||||| |||||||||||||| Sbjct: 13193044 gacgccgccggcgcccgcctcgccggcg 13193017
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cggccgcctcgccggcgggggcgg 117 |||||||||||||||||| ||||| Sbjct: 3594822 cggccgcctcgccggcggcggcgg 3594799
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 tcggcggccgcctcgccggcgggg 113 |||||| ||||||||||||||||| Sbjct: 28672884 tcggcgtccgcctcgccggcgggg 28672861
>gb|AF336281.1|AF336281 Gossypium hirsutum GHTTG1 (ghttg1) mRNA, complete cds Length = 1341 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 307 ccttcgaccacccgtacccgcccaccaagctc 338 ||||||||||||| || || |||||||||||| Sbjct: 380 ccttcgaccacccttatccacccaccaagctc 411
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 tcgccggcgggggcggacgcggcg 125 |||||||||| ||||||||||||| Sbjct: 67470 tcgccggcggcggcggacgcggcg 67447
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 ccgacgccgtcggcggccgcctcgccgg 108 |||||| || |||||||||||||||||| Sbjct: 4561378 ccgacgtcggcggcggccgcctcgccgg 4561405
>gb|AF530911.1| Gossypium hirsutum WD-repeat protein GhTTG3 gene, complete cds Length = 2008 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 307 ccttcgaccacccgtacccgcccaccaagctc 338 ||||||||||||| || || |||||||||||| Sbjct: 403 ccttcgaccacccttatccacccaccaagctc 434
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 tcggcggccgcctcgccggcgggg 113 |||||| ||||||||||||||||| Sbjct: 55958 tcggcgtccgcctcgccggcgggg 55935
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 gacgccgtcggcggccgcctcgccggcg 110 ||||||| ||||| |||||||||||||| Sbjct: 111371 gacgccgccggcgcccgcctcgccggcg 111344
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cggccgcctcgccggcgggggcgg 117 |||||||||||||||||| ||||| Sbjct: 86659 cggccgcctcgccggcggcggcgg 86636
>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome Length = 208315 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cgtcggcggccgcctcgccg 107 |||||||||||||||||||| Sbjct: 75710 cgtcggcggccgcctcgccg 75691
>dbj|AP004857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1711_D06 Length = 87613 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 91 cggcggccgcctcgccggcgggggcggacgcggcgc 126 ||||||||||| || |||||| ||||| |||||||| Sbjct: 8082 cggcggccgccgcggcggcggcggcggccgcggcgc 8117
>ref|XM_312200.2| Anopheles gambiae str. PEST ENSANGP00000010792 (ENSANGG00000008303), partial mRNA Length = 444 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 cgccgaacccgtacgccttcacgt 147 ||||||| |||||||||||||||| Sbjct: 2 cgccgaaaccgtacgccttcacgt 25
>dbj|AK105530.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G09, full insert sequence Length = 1939 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cggccgcctcgccggcgggggcgg 117 |||||||||||||||||| ||||| Sbjct: 38 cggccgcctcgccggcggcggcgg 61
>ref|NM_211844.1| Eremothecium gossypii AGR116Wp (AGR116W), mRNA Length = 3504 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ggcggccgcctcgccggcgg 111 |||||||||||||||||||| Sbjct: 545 ggcggccgcctcgccggcgg 526
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cggcggccgcctcgccggcg 110 |||||||||||||||||||| Sbjct: 3170051 cggcggccgcctcgccggcg 3170070
>dbj|AK066673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O14, full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tcggcggccgcctcgccggcgggg 113 |||||| ||||||||||||||||| Sbjct: 531 tcggcgtccgcctcgccggcgggg 554
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gcggccgcctcgccggcggg 112 |||||||||||||||||||| Sbjct: 2928706 gcggccgcctcgccggcggg 2928725
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcggcggccgcctcgccggc 109 |||||||||||||||||||| Sbjct: 3846014 tcggcggccgcctcgccggc 3845995
>dbj|AB232778.1| Ipomoea purpurea IpWDR2 mRNA for WD40 repeat protein, complete cds, strain:YO/FP-39 Length = 1361 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 303 ctctccttcgaccacccgtacccgcccaccaa 334 ||||||||||| ||||| ||||| |||||||| Sbjct: 418 ctctccttcgagcacccttaccctcccaccaa 449
>gb|AY955107.1| Uncultured bacterium clone ZRAMA32 putative nitrous oxide reductase (nosZ) gene, partial cds Length = 460 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gacgccgtcggcggccgcct 102 |||||||||||||||||||| Sbjct: 413 gacgccgtcggcggccgcct 394
>dbj|AB070941.1| Streptomyces avermitilis polyketide-1 biosynthetic gene cluster Length = 24045 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 accacccgtacccgcccacc 332 |||||||||||||||||||| Sbjct: 23789 accacccgtacccgcccacc 23808
>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence Length = 53801 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 gacgccgtcggcggccgcctcgccggcg 110 ||||||| ||||| |||||||||||||| Sbjct: 9366 gacgccgccggcgcccgcctcgccggcg 9339 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,610,679 Number of Sequences: 3902068 Number of extensions: 2610679 Number of successful extensions: 71013 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68351 Number of HSP's gapped (non-prelim): 2659 length of query: 345 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 323 effective length of database: 17,147,199,772 effective search space: 5538545526356 effective search space used: 5538545526356 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
