ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast11d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 55 5e-08
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 54 1e-07
3FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3.... 30 1.6
4FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor... 30 2.1
5CRM_DROSE (Q8MX88) Protein cramped 30 2.1
6FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chlor... 30 2.1
7FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloropl... 28 6.2
8GUN2_THEFU (P26222) Endoglucanase E-2 precursor (EC 3.2.1.4) (En... 28 8.1

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +1

Query: 121 VPAIIVFGDSSVDTGNNNFIPTIARSNFWPYGRDFADGHPTGRFS 255
           +PA+  FGDS  DTGNNN + T  + N+ PYG DF  G  TGRFS
Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFS 167



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +1

Query: 121 VPAIIVFGDSSVDTGNNNFIPTIARSNFWPYGRDFADGHPTGRFS 255
           +PA+  FGDS  DTGNNN + T  +SN+ PYG DF     TGRFS
Sbjct: 202 IPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFS 246



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>FTSH4_SYNY3 (P72991) Cell division protein ftsH homolog 4 (EC 3.4.24.-)|
          Length = 616

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 AVAAAGKVPAIIVFGDSSVDTGNNNFIPTIAR 195
           AVA  G++   I+FG+  V TG +N +  +AR
Sbjct: 479 AVALGGRIAEEIIFGEEEVTTGASNDLQQVAR 510



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>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 AVAAAGKVPAIIVFGDSSVDTGNNNFIPTIAR 195
           AVA  G+V   ++FGD +V TG +N    ++R
Sbjct: 580 AVALGGRVAEEVIFGDENVTTGASNDFMQVSR 611



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>CRM_DROSE (Q8MX88) Protein cramped|
          Length = 975

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -2

Query: 233 PSAKSRPYGQKLLRAMVGMKLLLPVSTDESPNTMIAGTLPAAATAVGXXXXXXXXPSTRR 54
           P  ++ P    L  AMV   +    +   +P+T+++G+L A + A           +  +
Sbjct: 504 PVLQAYPASADLSHAMVTSVIQTTCAAAPAPSTLVSGSLTAPSVARSKRKEAKEAAAAAQ 563

Query: 53  IRHGRYLWSDDI 18
            R+ + L SDDI
Sbjct: 564 ARNFKPLLSDDI 575



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>FTSH2_ARATH (Q9FH02) Cell division protein ftsH homolog 2, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 704

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 AVAAAGKVPAIIVFGDSSVDTGNNNFIPTIAR 195
           AVA  G+V   ++FGD +V TG +N    ++R
Sbjct: 568 AVALGGRVAEEVIFGDENVTTGASNDFMQVSR 599



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>FTSH_CAPAN (Q39444) Cell division protein ftsH homolog, chloroplast precursor|
           (EC 3.4.24.-) (Fragment)
          Length = 662

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 AVAAAGKVPAIIVFGDSSVDTGNNNFIPTIAR 195
           AVA  G+V   ++FG+ +V TG +N    ++R
Sbjct: 548 AVALGGRVAEEVIFGEDNVTTGASNDFMQVSR 579



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>GUN2_THEFU (P26222) Endoglucanase E-2 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase E-2) (Cellulase E-2) (Cellulase
           E2)
          Length = 441

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 97  TAVAAAGKVPAIIVFGDSSVDTGNNNFIPTIARSNFWPYGRDFADG 234
           +A  AAGK+P ++V+     D GN++     + S +  +  +FA G
Sbjct: 90  SAAQAAGKIPILVVYNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAG 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,149,754
Number of Sequences: 219361
Number of extensions: 343791
Number of successful extensions: 1233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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