>FBX41_MOUSE (Q6NS60) F-box only protein 41|
          Length = 872

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 5   LLHFAHSHFPLRHTPSLFTGGDR--ERSAEPHPILSLSKTLPKPPHPAGEL--RQSVAS 169
           LLH  H H PL H P+         E  AEP  + +    L +   P GEL  R+SVAS
Sbjct: 104 LLHHHHHHAPLAHFPADLVPASLPCEELAEPGLVPAARYALREIEIPLGELFARKSVAS 162

>FUCO_CAEEL (P49713) Putative alpha-L-fucosidase precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase)
          Length = 482

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 139 WVWWFWEGFRERKDWMGF 86
           W+WW+W+G +  KD + F
Sbjct: 57  WMWWYWKGTQPDKDVVNF 74

>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 11  HFAHSHFPLRHT---PSLFTGGDRERSAEPHPILSLSKTLPKPPHPA 142
           H  H H+    T   P L  GG    +A      S S TLP+PPH A
Sbjct: 42  HHHHHHYHQSGTATLPRLGAGGLASAAASAQRGPSSSATLPRPPHHA 88

>ALL4_ASPFU (O60024) Allergen Asp f 4 precursor|
          Length = 322

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
 Frame = -3

Query: 228 AASNRPSPATVDSSKPRFHQLATDWRSSPAG----CGGFGRVLERERIG----------W 91
           AA++ P P++  S       ++ DW ++PA       GFG   E    G          W
Sbjct: 83  AAASTPEPSSSHSDSSSSSGVSADWTNTPAEGEYCTDGFGGRTEPSGSGIFYKGNVGKPW 142

Query: 90  GSALLSLSP 64
           GS ++ +SP
Sbjct: 143 GSNIIEVSP 151

>ISP2_HEMAM (P05140) Type-2 ice-structuring protein precursor (Type II|
           antifreeze protein) (AFP)
          Length = 163

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 165 PADEIGACCCQLSPVMDGCW 224
           P D + ACC Q++   D CW
Sbjct: 127 PDDVLAACCMQMTAAADQCW 146

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 20   HSHFPLRHTPSLFTGGDRERSAEPHPILSLSKTLPKPPHPAGELRQSVAS 169
            HSHF  R++ S     D E  ++P P L++ +    P  PA E+++   S
Sbjct: 2569 HSHFGKRNSNSTRIASDSESQSQPAPDLTIKQ--EHPIAPAQEIKREQLS 2616

>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 75  REARNPIQSF--LSLKPSQNHHTQQENSANPSPADEIGACCCQLSP 206
           +E RNP  +   +S+ P  + H Q +NS  PSP        C +SP
Sbjct: 218 QEGRNPFTTAYDISVLPRTDSHPQLQNSLWPSPGSGSPGGPCLMSP 263

>PRRT1_HUMAN (Q99946) Proline-rich transmembrane protein 1|
          Length = 306

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 11  HFAHSHFPLRHT---PSLFTGGDRERSAEPHPILSLSKTLPKPPHPA 142
           H  H H+    T   P L  GG    +A      S S TLP+PPH A
Sbjct: 42  HHHHHHYHQSGTATLPRLGAGGLASSAATAQRGPSSSATLPRPPHHA 88

>KICH_SCHPO (Q10276) Putative choline kinase (EC 2.7.1.32)|
          Length = 456

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 151 EFSCWVWWFWEGFRERKDWMGFRASLS 71
           +F+ +  WF E  R++KDW G +   S
Sbjct: 215 DFNAYYNWFVEWSRDKKDWFGLKMVFS 241

>ADRO_MOUSE (Q61578) NADPH:adrenodoxin oxidoreductase, mitochondrial precursor|
           (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin
           reductase) (Ferredoxin--NADP(+) reductase)
          Length = 494

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 142 CWVWWFWEGFRERKDWMGFRASLSIST 62
           CW WW W        W G R S S ST
Sbjct: 5   CWHWWRWSA------WSGLRPSPSRST 25

>SIMA_DROME (Q24167) Protein similar|
          Length = 1507

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 99   SFLSLKPSQNHHTQQENSANPSPADEIGACCC 194
            S LS  P Q HH QQ+ +   S + E+ A  C
Sbjct: 933  SSLSPSPVQQHHQQQQAAVFTSDSSELAALLC 964

>NRFD_ECOLI (P32709) Protein nrfD|
          Length = 318

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 205 GDS*QQQAPISSAGDGLAEFSCWVWWFWEG 116
           GD  + +A +++ G G      W WWFW G
Sbjct: 242 GDDGKVRALVAALGGGF-----WTWWFWLG 266

>HCF_DROME (Q9V4C8) Host cell factor (dHcf) [Contains: HCF N-terminal chain;|
           HCF C-terminal chain]
          Length = 1500

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 144 PAGCGGFGRVLERERIGWGSALLSLSPPVNREGVCRSGKWEWAK 13
           P GC  +G V+E  R+     ++      N     ++ KWEW K
Sbjct: 120 PNGCAAYGFVVEGTRMFVFGGMIEYGKYSNELYELQATKWEWRK 163

>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1904

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  EIEREARNPIQSFLSLKPSQNHHTQQENSANPSP 167
           E +R++R P Q+  SL+P  +H T+ E      P
Sbjct: 398 ESKRDSREPKQTKRSLEPELDHDTEVEKDVETEP 431

>GBG_ASHGO (Q75BU5) Guanine nucleotide-binding protein gamma subunit|
          Length = 90

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 111 LKPSQNHHTQQENSANPSPADEIGACCC 194
           +KP +NH       A P    E G+CCC
Sbjct: 62  MKPGENHFRASAKQARPRGGHE-GSCCC 88

>GRIPE_HUMAN (Q6GYQ0) GTPase-activating Rap/Ran-GAP domain-like 1|
           (GAP-related-interacting partner to E12) (GRIPE)
           (Tuberin-like protein 1)
          Length = 2036

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 14  FAHSHFPLRHTPSLFTGGDRERSAEPHPILSLSKTLPKP 130
           F  SHF   + P +F    +E S   HPIL + +  PKP
Sbjct: 239 FLFSHFKKYYLPYIFPNICKENSLY-HPILDIPQMRPKP 276

>FBX41_HUMAN (Q8TF61) F-box only protein 41|
          Length = 874

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 5   LLHFAHSHFPLRHTPSLFTGGDR--ERSAEPH--PILSLSKTLPKPPHPAGEL--RQSVA 166
           LLH  H H PL H P          E  AEP   P  +    L +   P GEL  R+SVA
Sbjct: 104 LLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAAAARYALREIEIPLGELFARKSVA 163

Query: 167 S 169
           S
Sbjct: 164 S 164

>YN53_CAEEL (P34587) Hypothetical protein ZC21.3|
          Length = 321

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 123 QNHHTQQENSANPSP---ADEIGACCCQLS 203
           Q++ TQQ  S+ PSP   AD I +CC Q+S
Sbjct: 263 QSYSTQQYGSSTPSPQYSADSI-SCCSQVS 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,725,418
Number of Sequences: 219361
Number of extensions: 913055
Number of successful extensions: 3247
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3247
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)