>GLHA_ICTPU (Q9YGP3) Glycoprotein hormones alpha chain precursor (Gonadotropin|
           alpha chain) (GTH-alpha)
          Length = 116

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 36  TQRITATMKKAVKRVINQQHRLLQHTDC 119
           T   T  + K VKRVI    +L+ HTDC
Sbjct: 79  TSEATCCVAKEVKRVIVNDVKLMNHTDC 106

>GLHA_CLAGA (P53542) Glycoprotein hormones alpha chain precursor (Gonadotropin|
           alpha chain) (GTH-alpha)
          Length = 116

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 36  TQRITATMKKAVKRVINQQHRLLQHTDC 119
           T   T  + K VKRVI    +L+ HTDC
Sbjct: 79  TSEATCCVAKEVKRVIVNDVKLVNHTDC 106

>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)|
          Length = 3969

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 110  MLQQSMLLVYDSLYGLLHCRRYPLRFH 30
            +L  +++ + + L G  HCR Y  RFH
Sbjct: 3722 ILHDAVVFLIEQLSGAKHCRNYKFRFH 3748

>YKT2_CAEEL (Q5CZ51) Hypothetical protein C07A9.12|
          Length = 235

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 109 CCSNRCCWFMTLFTAFFIVAVILCV 35
           CC   CC   T+FT+ F + VIL +
Sbjct: 176 CCGYDCCSNSTIFTSIFSLLVILLI 200

>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 110  MLQQSMLLVYDSLYGLLHCRRYPLRFH 30
            +L  +++ + + L G  HCR Y  RFH
Sbjct: 3619 ILHDAVVFLIEQLAGAKHCRNYKFRFH 3645

>COMGB_BACHD (Q9K920) ComG operon protein 2 homolog|
          Length = 323

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 112 VCCSNRCCWFMTLFTAFFIVAVIL 41
           + CS +  W   LFTAFF+VA++L
Sbjct: 135 IACSEKLPW---LFTAFFVVAILL 155

>GLHA_HYPMO (P37037) Glycoprotein hormones alpha chain precursor (Gonadotropin|
           alpha chain) (GTH-alpha)
          Length = 118

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 36  TQRITATMKKAVKRVINQQHRLLQHTDC 119
           T   T  + K VKRV+    +L+ HTDC
Sbjct: 81  TSEATCCVAKEVKRVLVNDVKLVNHTDC 108

>GLHA_CTEID (P30983) Glycoprotein hormones alpha chain precursor (Gonadotropin|
           alpha chain) (GTH-alpha)
          Length = 118

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 36  TQRITATMKKAVKRVINQQHRLLQHTDC 119
           T   T  + K VKRV+    +L+ HTDC
Sbjct: 81  TSEATCCVAKEVKRVLVNDVKLVNHTDC 108

>GLHA1_CYPCA (P01221) Glycoprotein hormones alpha chain 1 precursor|
           (Gonadotropin alpha chain 1) (GTH-alpha)
          Length = 118

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 36  TQRITATMKKAVKRVINQQHRLLQHTDC 119
           T   T  + K VKRV+    +L+ HTDC
Sbjct: 81  TSEATCCVAKEVKRVLVNDVKLVNHTDC 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,447,970
Number of Sequences: 219361
Number of extensions: 331087
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)