ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast10c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Minus Query: 19 cgctcccgccgcgcatgcgcccgccga 45 ||||||||||||||| ||||||||||| Sbjct: 1426297 cgctcccgccgcgcaggcgcccgccga 1426271
>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds Length = 100773 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 178 cgccggagccgcggccccggccgagcc 204 ||||||||||| ||||||||||||||| Sbjct: 86972 cgccggagccgaggccccggccgagcc 86998
>gb|AC136999.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009L15, complete sequence Length = 137570 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 297 cccgctgcagccgccgtcgcaa 318 |||||||||||||||||||||| Sbjct: 94398 cccgctgcagccgccgtcgcaa 94419
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 297 cccgctgcagccgccgtcgcaa 318 |||||||||||||||||||||| Sbjct: 16963361 cccgctgcagccgccgtcgcaa 16963382
>gb|DQ333390.1| Cervid herpesvirus 1 glycoprotein C gene, complete cds Length = 1604 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ggccgccggagccgcggccccggccg 200 |||||| ||||||||||||||||||| Sbjct: 365 ggccgcgggagccgcggccccggccg 340
>ref|XM_525749.1| PREDICTED: Pan troglodytes LOC470367 (LOC470367), mRNA Length = 4146 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 cgccaggccagcggggaggcaggag 275 |||| |||||||||||||||||||| Sbjct: 3411 cgccgggccagcggggaggcaggag 3435
>ref|XM_530159.1| PREDICTED: Pan troglodytes LOC457167 (LOC457167), mRNA Length = 1376 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 tcccgctgcagccgccgtcgc 316 ||||||||||||||||||||| Sbjct: 1065 tcccgctgcagccgccgtcgc 1045
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cgcgcatgcgcccgccgacgg 48 ||||||||||||||||||||| Sbjct: 176382 cgcgcatgcgcccgccgacgg 176402
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cgcgcatgcgcccgccgacgg 48 ||||||||||||||||||||| Sbjct: 1571878 cgcgcatgcgcccgccgacgg 1571898
>gb|AC022098.9| Homo sapiens chromosome 19 clone CTB-55O6, complete sequence Length = 237931 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 gccgccggagccgcggccccggccg 200 |||||||||||||| |||||||||| Sbjct: 16389 gccgccggagccgccgccccggccg 16365
>dbj|AB125217.1| Streptomyces griseus ap12875 gene for amino peptidase, partial cds Length = 1445 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 ccaggccgccggagccgcggccccg 196 |||||||||||| |||||||||||| Sbjct: 493 ccaggccgccggcgccgcggccccg 517
>gb|AE005986.1| Caulobacter crescentus CB15 section 312 of 359 of the complete genome Length = 14149 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gccgccggagccgcggccccg 196 ||||||||||||||||||||| Sbjct: 4545 gccgccggagccgcggccccg 4565
>gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, complete sequence Length = 214530 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 gccgccggagccgcggccccggccg 200 |||||||||||||| |||||||||| Sbjct: 192159 gccgccggagccgccgccccggccg 192135
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacgg 340 ||||||||||||||||||||| Sbjct: 4624218 gccgccggagcagcagcacgg 4624198 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 1583568 accacccctcccgctcccgc 1583587
>gb|AC012354.11| Homo sapiens BAC clone RP11-89K21 from 2, complete sequence Length = 171167 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 cgccaggccagcggggaggcaggag 275 |||| |||||||||||||||||||| Sbjct: 113048 cgccgggccagcggggaggcaggag 113072
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_C08 Length = 150300 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacgg 340 ||||||||||||||||||||| Sbjct: 148066 gccgccggagcagcagcacgg 148046
>dbj|AP004590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577G06 Length = 58137 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacgg 340 ||||||||||||||||||||| Sbjct: 38723 gccgccggagcagcagcacgg 38703
>dbj|AK122092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124E22, full insert sequence Length = 4056 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacgg 340 ||||||||||||||||||||| Sbjct: 26 gccgccggagcagcagcacgg 6
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgccagcggctgggccaggc 103 |||||||||||||||||||| Sbjct: 1797136 cgccagcggctgggccaggc 1797117
>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence Length = 212727 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 gccgccggagccgcggccccggcc 199 |||||||||||||| ||||||||| Sbjct: 76874 gccgccggagccgccgccccggcc 76897
>ref|XM_479908.1| Oryza sativa (japonica cultivar-group), mRNA Length = 890 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 295 accacccctcccgctcccgc 276
>ref|XM_507112.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.30 mRNA Length = 1003 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 296 accacccctcccgctcccgc 277
>ref|XM_531234.1| PREDICTED: Pan troglodytes LOC465030 (LOC465030), mRNA Length = 804 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 ggctcccgctgcagccgccgtcgc 316 |||||| ||||||||||||||||| Sbjct: 267 ggctccagctgcagccgccgtcgc 244
>ref|XM_528185.1| PREDICTED: Pan troglodytes chromosome 8 open reading frame 1 (LOC472813), mRNA Length = 2070 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccgctgcagccgccgtcgca 317 |||||||||||||||||||| Sbjct: 386 ccgctgcagccgccgtcgca 405
>ref|XM_465513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 501 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ggctcccgctgcagccgccg 312 |||||||||||||||||||| Sbjct: 78 ggctcccgctgcagccgccg 59
>ref|XM_463150.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1320 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 1047 accacccctcccgctcccgc 1066
>ref|NM_014353.4| Homo sapiens RAB26, member RAS oncogene family (RAB26), mRNA Length = 1641 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 114 gctcccgctgcagccgccgt 95
>gb|AC005346.1| Homo sapiens chromosome 16, cosmid clone 2H2 (LANL), complete sequence Length = 38849 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 19977 gctcccgctgcagccgccgt 19996
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence Length = 140012 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 62795 accacccctcccgctcccgc 62776
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacg 339 |||||||||||||||||||| Sbjct: 51558 gccgccggagcagcagcacg 51539
>gb|AY646153.1| Homo sapiens Ras-related oncogene protein (RAB26) mRNA, complete cds Length = 1656 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 131 gctcccgctgcagccgccgt 112
>gb|AY489160.1| Gallus gallus clone BFCC12a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489159.1| Gallus gallus clone BFCC11a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489158.1| Gallus gallus clone BFCC2b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489157.1| Gallus gallus clone BFCC2a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489156.1| Gallus gallus clone BFCC14a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489155.1| Gallus gallus clone BFCC13a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489154.1| Gallus gallus clone BFCC14b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489153.1| Gallus gallus clone BFCC10b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489152.1| Gallus gallus clone BFCC10a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489151.1| Gallus gallus clone BFCC9b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489150.1| Gallus gallus clone BFCC9a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489149.1| Gallus gallus clone BFCC8a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489148.1| Gallus gallus clone BFCC7b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489147.1| Gallus gallus clone BFCC7a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489146.1| Gallus gallus clone BFCC6b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489145.1| Gallus gallus clone BFCC6a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489144.1| Gallus gallus clone BFCC5a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489143.1| Gallus gallus clone BFCC4b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489142.1| Gallus gallus clone BFCC4a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 752 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489141.1| Gallus gallus clone BFCC3b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489140.1| Gallus gallus clone BFCC3a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 752 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489139.1| Gallus gallus clone BFCC1a MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY489138.1| Gallus gallus clone BFCC1b MHC class I antigen (B-F) gene, exons 2, 3 and partial cds Length = 766 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence Length = 180139 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 ccaggccagcggggaggcaggagg 276 |||||||||||||| ||||||||| Sbjct: 21245 ccaggccagcggggtggcaggagg 21268
>ref|NM_024761.3| Homo sapiens MOB1, Mps One Binder kinase activator-like 2B (yeast) (MOBKL2B), mRNA Length = 6528 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 ggctcccgctgcagccgccgtcgc 316 |||||| ||||||||||||||||| Sbjct: 118 ggctccagctgcagccgccgtcgc 95
>gb|AY192766.1| Ateles geoffroyi plasminogen (PLG) gene, exon 6 and partial cds Length = 1198 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 caggccagcggggaggcagg 273 |||||||||||||||||||| Sbjct: 228 caggccagcggggaggcagg 209
>gb|AY192761.1| Alouatta seniculus plasminogen (PLG) gene, exon 6 and partial cds Length = 1115 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 caggccagcggggaggcagg 273 |||||||||||||||||||| Sbjct: 167 caggccagcggggaggcagg 148
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gcaggagggccgcgccgctc 288 |||||||||||||||||||| Sbjct: 190728 gcaggagggccgcgccgctc 190747 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 cccgccgcgcatgcgcccgccgac 46 |||||||||| ||||||||||||| Sbjct: 21249 cccgccgcgcctgcgcccgccgac 21272
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 22792864 accacccctcccgctcccgc 22792845
>gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21.3, complete sequence Length = 320187 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccgctgcagccgccgtcgca 317 |||||||||||||||||||| Sbjct: 291844 ccgctgcagccgccgtcgca 291863
>gb|AY327149.1| Gallus gallus MHC class I antigen BF heavy chain (BF) gene, BF*J3b allele, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY327148.1| Gallus gallus MHC class I antigen BF heavy chain (BF) gene, BF*J3a allele, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY327147.1| Gallus gallus MHC class I antigen BF heavy chain (BF) gene, BF*H8a allele, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY327146.1| Gallus gallus MHC class I antigen BF heavy chain (BF) gene, BF*H8b allele, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>ref|XM_533424.2| PREDICTED: Canis familiaris similar to NHS-like 1 (LOC476219), mRNA Length = 4821 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 gccgccggagccgcggccccggcc 199 ||||| |||||||||||||||||| Sbjct: 3700 gccgcaggagccgcggccccggcc 3723
>emb|AL451123.12| Human DNA sequence from clone RP11-27J8 on chromosome 9 Contains the gene for interferon kappa precursor (IFNK), the 5' UTR of a novel gene (FLJ13204), a novel gene, includes FLJ25077 and FLJ11109 (MGC23980) and 2 CpG islands, complete sequence Length = 140827 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ggctcccgctgcagccgccgtcgc 316 |||||| ||||||||||||||||| Sbjct: 70293 ggctccagctgcagccgccgtcgc 70316
>gb|AY210423.1| Gallus gallus haplotype B44 MHC class I antigen gene, partial cds Length = 447 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 227 cggagccgcggccccggccg 208
>gb|BC066913.1| Homo sapiens RAB26, member RAS oncogene family, mRNA (cDNA clone MGC:87104 IMAGE:5262795), complete cds Length = 1645 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 120 gctcccgctgcagccgccgt 101
>gb|AC025871.8| Homo sapiens chromosome 8, clone RP11-181B11, complete sequence Length = 172748 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgccggagccgcggccccgg 197 |||||||||||||||||||| Sbjct: 88812 cgccggagccgcggccccgg 88831
>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence Length = 216334 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgccggagccgcggccccgg 197 |||||||||||||||||||| Sbjct: 185866 cgccggagccgcggccccgg 185885
>emb|CR598645.1| full-length cDNA clone CS0DF031YA22 of Fetal brain of Homo sapiens (human) Length = 1720 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 140 gctcccgctgcagccgccgt 121
>dbj|AK023266.1| Homo sapiens cDNA FLJ13204 fis, clone NT2RP3004507, weakly similar to MOB1 PROTEIN Length = 2532 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 ggctcccgctgcagccgccgtcgc 316 |||||| ||||||||||||||||| Sbjct: 47 ggctccagctgcagccgccgtcgc 24
>gb|AE012235.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 143 of 460 of the complete genome Length = 8650 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 cgccggagccgcggccccggccga 201 ||||||||||||||||| |||||| Sbjct: 2573 cgccggagccgcggcccgggccga 2596
>gb|AC084261.5| Homo sapiens chromosome 8, clone RP3-335L1, complete sequence Length = 159212 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgccggagccgcggccccgg 197 |||||||||||||||||||| Sbjct: 5814 cgccggagccgcggccccgg 5833
>gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, complete sequence Length = 181991 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccacccctcccgctcccgcc 28 |||||||||||||||||||| Sbjct: 55286 ccacccctcccgctcccgcc 55305
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 cgccggagccgcggccccggccga 201 ||||||||||||||||| |||||| Sbjct: 3461845 cgccggagccgcggcccgggccga 3461822
>gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 217329 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ggccagcggggaggcaggag 275 |||||||||||||||||||| Sbjct: 163641 ggccagcggggaggcaggag 163622
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacg 339 |||||||||||||||||||| Sbjct: 18316193 gccgccggagcagcagcacg 18316174
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gccaggccgccggagccgcg 190 |||||||||||||||||||| Sbjct: 13605563 gccaggccgccggagccgcg 13605544
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 22785892 accacccctcccgctcccgc 22785873
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ggccgcgccgctcgggaggc 295 |||||||||||||||||||| Sbjct: 2063255 ggccgcgccgctcgggaggc 2063236
>gb|AC009065.8| Homo sapiens chromosome 16 clone RP11-304L19, complete sequence Length = 199759 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 128649 gctcccgctgcagccgccgt 128668
>gb|AC074178.1|AC074178 Homo sapiens PAC clone RP5-1098O20 from 8, complete sequence Length = 107549 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccgctgcagccgccgtcgca 317 |||||||||||||||||||| Sbjct: 35819 ccgctgcagccgccgtcgca 35838
>gb|AY126668.1| Gallus gallus haplotype BA1 MHC class I antigen heavy chain (B-F minor) gene, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AF483195.1| Gallus gallus MHC class I antigen BF minor alpha chain gene, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AF469127.1| Gallus gallus MHC class I antigen heavy chain (B-F minor) gene, B-F minor-BC2v allele, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AY072913.1| Gallus gallus MHC class I antigen B-F minor heavy chain (B-F minor) gene, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>gb|AF342825.1| Gallus gallus MHC class I antigen heavy chain (B-F minor) gene, B-F minor-BC1 allele, partial cds Length = 745 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 292 cggagccgcggccccggccg 273
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084P08 Length = 158656 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gccaggccgccggagccgcg 190 |||||||||||||||||||| Sbjct: 73182 gccaggccgccggagccgcg 73163
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 111056 accacccctcccgctcccgc 111075
>dbj|AK106093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B10, full insert sequence Length = 1070 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacg 339 |||||||||||||||||||| Sbjct: 222 gccgccggagcagcagcacg 203
>dbj|AK103321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125J05, full insert sequence Length = 1001 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 accacccctcccgctcccgc 27 |||||||||||||||||||| Sbjct: 296 accacccctcccgctcccgc 277
>emb|AJ325570.1|HSA325570 Homo sapiens genomic sequence surrounding NotI site, clone NB6-978S Length = 883 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gctcccgctgcagccgccgt 313 |||||||||||||||||||| Sbjct: 194 gctcccgctgcagccgccgt 213
>emb|AL023516.3|GGBLOCUS Gallus gallus (chicken) DNA sequence from a contig of cosmids cB12, c4.5 and cBF23. Contains two Butyrophilin like genes, a gene coding for two isoforms of a B locus G (Zipper protein) like protein, genes coding for B locus Lectin like Natural Killer cell surface protein, C type Lectin, TAP Binding Protein (Tapasin) like protein, L Beta chain 1 and 2, M Alpha chain 1, B Beta chain 1 and 2, F Alpha chain 1 and 2, Transport Associated Proteins TAP1 and 2 and complement C4, a Histone H3 like gene, a Leu-tRNA gene and the RING3 kinase gene Length = 92863 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 76010 cggagccgcggccccggccg 76029 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 61036 cggagccgcggccccggccg 61017
>gb|AF069291.1|AF069291 Homo sapiens BAC clone 255A7 from 8q21 containing NBS1 gene, complete sequence Length = 184919 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccgctgcagccgccgtcgca 317 |||||||||||||||||||| Sbjct: 61577 ccgctgcagccgccgtcgca 61596
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gccgccggagcagcagcacg 339 |||||||||||||||||||| Sbjct: 18475594 gccgccggagcagcagcacg 18475575
>emb|AL954802.1| Chicken DNA sequence from clone XX-CBF23 on chromosome 16, complete sequence Length = 32612 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 15760 cggagccgcggccccggccg 15779 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 786 cggagccgcggccccggccg 767
>gb|M31012.1|CHKMHBFVB Chicken MHC class I B-FIV-B12 alpha-chain gene, complete cds Length = 4790 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggagccgcggccccggccg 200 |||||||||||||||||||| Sbjct: 1879 cggagccgcggccccggccg 1860 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,837,329 Number of Sequences: 3902068 Number of extensions: 2837329 Number of successful extensions: 63587 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62422 Number of HSP's gapped (non-prelim): 1165 length of query: 344 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 322 effective length of database: 17,147,199,772 effective search space: 5521398326584 effective search space used: 5521398326584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
