ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast10b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular m... 202 5e-49
2emb|AJ234846.1|HVU234846 Hordeum vulgare genomic DNA fragment; c... 62 1e-06
3emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular ma... 54 3e-04
4dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 ... 48 0.018
5ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predic... 44 0.27
6ref|XM_468708.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
7ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
8ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
9gb|AY762229.1| Homo sapiens chronic myelogenous leukemia-associa... 44 0.27
10ref|NM_014867.1| Homo sapiens kelch repeat and BTB (POZ) domain ... 44 0.27
11gb|AC156838.3| Pan troglodytes BAC clone CH251-75L15 from chromo... 44 0.27
12gb|AC159107.2| Pan troglodytes BAC clone CH251-567D12 from chrom... 44 0.27
13gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23... 44 0.27
14gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, comp... 44 0.27
15gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, com... 44 0.27
16dbj|BS000186.1| Pan troglodytes chromosome 22 clone:RP43-074L01,... 44 0.27
17dbj|AB018254.1| Homo sapiens mRNA for KIAA0711 protein, partial cds 44 0.27
18emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular ma... 44 0.27
19dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
20dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.27
21gb|AF017356.1|AF017356 Oryza sativa low molecular early light-in... 44 0.27
22dbj|AP000467.1| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 44 0.27
23ref|XM_511771.1| PREDICTED: Pan troglodytes similar to beta-tubu... 42 1.1
24ref|XM_478375.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
25ref|XM_597110.2| PREDICTED: Bos taurus similar to Protein KIAA07... 42 1.1
26gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome... 42 1.1
27emb|AL390203.29| Human DNA sequence from clone RP11-462G8 on chr... 42 1.1
28dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 1.1
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
30dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.1
31dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
32dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
33gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.3
34gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 40 4.3
35ref|XM_421035.1| PREDICTED: Gallus gallus similar to Mucin 2 pre... 40 4.3
36gb|DQ397347.1| Uncultured archaeon clone 02N1AC4 16S ribosomal R... 40 4.3
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.3
38gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ... 40 4.3
39gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genom... 40 4.3
40gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genom... 40 4.3
41dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
42emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A... 40 4.3
43gb|AC159472.6| Mus musculus 10 BAC RP23-244J20 (Roswell Park Can... 40 4.3
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
47gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complet... 40 4.3
48dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
49dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
50emb|Z54072.1|HSL261H12 Human DNA sequence from clone LA04NC01-26... 40 4.3
51emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chro... 40 4.3 
>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early
           light-inducible protein (ELIP) (clone HV58)
          Length = 860

 Score =  202 bits (102), Expect = 5e-49
 Identities = 120/126 (95%)
 Strand = Plus / Plus

                                                                       
Query: 91  tctctgccttgagtaatggcgaccatggtggctttgagttccttcgccgtcgttggccgg 150
           |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 68  tctctgccttgagtgatggcgaccatggtggctttgagctccttcgccgttgttggccgg 127

                                                                       
Query: 151 tccgccgcccgctctccagtggcggccccgcgccggcgcgccctcgtcgtcagggcccag 210
           ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 128 tccgccgcccgttctccagtggtggccccgcgccggcgcaccctcgtcgtcagggcccag 187

                 
Query: 211 accgag 216
           ||||||
Sbjct: 188 accgag 193



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 273 gagcccggccccgaccccgatcccggcggcacccaagcccatgaccaagaag 324
           ||||||| |||||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 370 gagcccgtccccgaccacgatcccggcagcacccaagcccgtgaccaagaag 421



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 215 agcctgacatggactcgaccaaggagacaacgagcgcatcgacctcc 261
           ||||||||||||||||  |||||||||| |||||||| |||||||||
Sbjct: 303 agcctgacatggactcagccaaggagacgacgagcgcgtcgacctcc 349
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>emb|AJ234846.1|HVU234846 Hordeum vulgare genomic DNA fragment; clone MWG2224
          Length = 393

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 178 ccgcgccggcgcgccctcgtcgtcagggcccagaccgag 216
           ||||| |||||||||||| ||||||||||||||||||||
Sbjct: 119 ccgcgtcggcgcgccctcctcgtcagggcccagaccgag 81
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>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early
           light-inducible protein (ELIP) (clone HV90)
          Length = 660

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 182 gccggcgcgccctcgtcgtcagggcccagaccgag 216
           |||| |||||||||||||||||||| |||||||||
Sbjct: 128 gccgacgcgccctcgtcgtcagggcacagaccgag 162
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>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early
           light-inducible protein (ELIP), complete cds
          Length = 818

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 187 cgcgccctcgtcgtcagggcccagaccg 214
           |||||||||||||||||||| |||||||
Sbjct: 223 cgcgccctcgtcgtcagggcacagaccg 250
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>ref|NM_188763.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 193 ctcgtcgtcagggcccagaccgagcc 218
           |||||||||||||||||| |||||||
Sbjct: 121 ctcgtcgtcagggcccagtccgagcc 146
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>ref|XM_468708.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 669

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 193 ctcgtcgtcagggcccagaccgagcc 218
           |||||||||||||||||| |||||||
Sbjct: 130 ctcgtcgtcagggcccaggccgagcc 155
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>ref|XM_476845.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 564

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 193 ctcgtcgtcagggcccagaccgagcc 218
           |||||||||||||||||| |||||||
Sbjct: 97  ctcgtcgtcagggcccaggccgagcc 122
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>ref|XM_476844.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 603

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 193 ctcgtcgtcagggcccagaccgagcc 218
           |||||||||||||||||| |||||||
Sbjct: 130 ctcgtcgtcagggcccaggccgagcc 155
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>gb|AY762229.1| Homo sapiens chronic myelogenous leukemia-associated protein mRNA,
            complete cds
          Length = 1872

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 175  gccccgcgccggcgcgccctcg 196
            ||||||||||||||||||||||
Sbjct: 1053 gccccgcgccggcgcgccctcg 1032
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>ref|NM_014867.1| Homo sapiens kelch repeat and BTB (POZ) domain containing 11
            (KBTBD11), mRNA
          Length = 6706

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 175  gccccgcgccggcgcgccctcg 196
            ||||||||||||||||||||||
Sbjct: 2016 gccccgcgccggcgcgccctcg 1995
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>gb|AC156838.3| Pan troglodytes BAC clone CH251-75L15 from chromosome unknown, complete
             sequence
          Length = 180639

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 279   ggccccgaccccgatcccggcg 300
             ||||||||||||||||||||||
Sbjct: 78132 ggccccgaccccgatcccggcg 78153
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>gb|AC159107.2| Pan troglodytes BAC clone CH251-567D12 from chromosome unknown, complete
              sequence
          Length = 198786

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 279    ggccccgaccccgatcccggcg 300
              ||||||||||||||||||||||
Sbjct: 134455 ggccccgaccccgatcccggcg 134434
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>gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23, complete sequence
          Length = 131992

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   gccccgcgccggcgcgccctcg 196
             ||||||||||||||||||||||
Sbjct: 88112 gccccgcgccggcgcgccctcg 88091
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>gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, complete sequence
          Length = 165995

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 175   gccccgcgccggcgcgccctcg 196
             ||||||||||||||||||||||
Sbjct: 91652 gccccgcgccggcgcgccctcg 91631
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>gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, complete sequence
          Length = 220201

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 175   gccccgcgccggcgcgccctcg 196
             ||||||||||||||||||||||
Sbjct: 14979 gccccgcgccggcgcgccctcg 15000
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>dbj|BS000186.1| Pan troglodytes chromosome 22 clone:RP43-074L01, map 22, complete
             sequences
          Length = 176135

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 279   ggccccgaccccgatcccggcg 300
             ||||||||||||||||||||||
Sbjct: 83188 ggccccgaccccgatcccggcg 83209
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>dbj|AB018254.1| Homo sapiens mRNA for KIAA0711 protein, partial cds
          Length = 6706

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 175  gccccgcgccggcgcgccctcg 196
            ||||||||||||||||||||||
Sbjct: 2016 gccccgcgccggcgcgccctcg 1995
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>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early
           light-inducible protein (ELIP) (clone HV60)
          Length = 764

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 191 ccctcgtcgtcagggcccagaccgag 216
           |||||||||||||||| |||||||||
Sbjct: 218 ccctcgtcgtcagggcacagaccgag 243



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 98  cttgagtaatggcgaccatggtggctttgagttccttcgccg 139
           ||||| |||||||||||||| ||||  |||| ||||||||||
Sbjct: 119 cttgattaatggcgaccatgatggccatgagctccttcgccg 160
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>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full
           insert sequence
          Length = 942

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 193 ctcgtcgtcagggcccagaccgagcc 218
           |||||||||||||||||| |||||||
Sbjct: 270 ctcgtcgtcagggcccagtccgagcc 295
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>dbj|AP001719.1| Homo sapiens genomic DNA, chromosome 21q, section 63/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 279  ggccccgaccccgatcccggcg 300
            ||||||||||||||||||||||
Sbjct: 4983 ggccccgaccccgatcccggcg 5004
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>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA,
           complete cds
          Length = 818

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 193 ctcgtcgtcagggcccagaccgagcc 218
           |||||||||||||||||| |||||||
Sbjct: 201 ctcgtcgtcagggcccaggccgagcc 226
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>dbj|AP000467.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B338L7, complete
             sequence
          Length = 47381

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 279   ggccccgaccccgatcccggcg 300
             ||||||||||||||||||||||
Sbjct: 22944 ggccccgaccccgatcccggcg 22965
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>ref|XM_511771.1| PREDICTED: Pan troglodytes similar to beta-tubulin cofactor D
            (LOC455000), mRNA
          Length = 21183

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 106  atggcgaccatggtggctttg 126
            |||||||||||||||||||||
Sbjct: 6853 atggcgaccatggtggctttg 6873
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>ref|XM_478375.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 489

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 gcccggccccgaccccgatcccggc 299
           |||||||||||||||||| ||||||
Sbjct: 350 gcccggccccgaccccgaccccggc 374
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>ref|XM_597110.2| PREDICTED: Bos taurus similar to Protein KIAA0711 (LOC518907), mRNA
          Length = 1926

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 175  gccccgcgccggcgcgccctc 195
            |||||||||||||||||||||
Sbjct: 1092 gccccgcgccggcgcgccctc 1072
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>gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome 12, complete sequence
          Length = 201510

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   agaccgagcctgacatggact 229
             |||||||||||||||||||||
Sbjct: 94986 agaccgagcctgacatggact 94966
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>emb|AL390203.29| Human DNA sequence from clone RP11-462G8 on chromosome 10 Contains the 3'
              end of gene FLJ38950 and two novel genes, complete sequence
          Length = 150622

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    atggtggctttgagttccttc 135
              |||||||||||||||||||||
Sbjct: 124419 atggtggctttgagttccttc 124399
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 86      tctactctctgccttgagtaa 106
               |||||||||||||||||||||
Sbjct: 4033492 tctactctctgccttgagtaa 4033512
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 275      gcccggccccgaccccgatcccggc 299
                |||||||||||||||||| ||||||
Sbjct: 19597050 gcccggccccgaccccgaccccggc 19597026



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 193     ctcgtcgtcagggcccagaccgag 216
               |||||||||||||||||| |||||
Sbjct: 4178272 ctcgtcgtcagggcccaggccgag 4178295



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 193     ctcgtcgtcagggcccagaccgag 216
               |||||||||||||||||| |||||
Sbjct: 4175840 ctcgtcgtcagggcccaggccgag 4175863
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 172     gcggccccgcgccggcgcgcc 192
               |||||||||||||||||||||
Sbjct: 1153054 gcggccccgcgccggcgcgcc 1153034
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 275    gcccggccccgaccccgatcccggc 299
              |||||||||||||||||| ||||||
Sbjct: 140394 gcccggccccgaccccgaccccggc 140370
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 275   gcccggccccgaccccgatcccggc 299
             |||||||||||||||||| ||||||
Sbjct: 35700 gcccggccccgaccccgaccccggc 35676
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     cggccccgcgccggcgcgcc 192
               ||||||||||||||||||||
Sbjct: 3613618 cggccccgcgccggcgcgcc 3613637
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>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete
              sequence
          Length = 145714

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    gcgccggcgcgccctcgtcg 199
              ||||||||||||||||||||
Sbjct: 136355 gcgccggcgcgccctcgtcg 136336
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>ref|XM_421035.1| PREDICTED: Gallus gallus similar to Mucin 2 precursor (Intestinal
            mucin 2) (LOC423101), mRNA
          Length = 10515

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   cagcaccaacttctcagttc 67
            ||||||||||||||||||||
Sbjct: 3525 cagcaccaacttctcagttc 3544
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>gb|DQ397347.1| Uncultured archaeon clone 02N1AC4 16S ribosomal RNA gene, partial
           sequence
          Length = 1090

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 ggccccgcgccggcgcgccc 193
           ||||||||||||||||||||
Sbjct: 230 ggccccgcgccggcgcgccc 211
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 193      ctcgtcgtcagggcccagaccgag 216
                |||||||||||||||||| |||||
Sbjct: 17148744 ctcgtcgtcagggcccaggccgag 17148721



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      gcgccggcgcgccctcgtcg 199
                ||||||||||||||||||||
Sbjct: 16447978 gcgccggcgcgccctcgtcg 16447997
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>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
          Length = 182756

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   ctcgtcgtcagggcccagaccgag 216
             |||||||||||||||||| |||||
Sbjct: 25240 ctcgtcgtcagggcccagtccgag 25263
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>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete
             sequence
          Length = 146775

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gcgccggcgcgccctcgtcg 199
             ||||||||||||||||||||
Sbjct: 19240 gcgccggcgcgccctcgtcg 19221
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>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
             sequence
          Length = 153247

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   ctcgtcgtcagggcccagaccgag 216
             |||||||||||||||||| |||||
Sbjct: 40137 ctcgtcgtcagggcccaggccgag 40114
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>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004G10
          Length = 150379

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   ctcgtcgtcagggcccagaccgag 216
             |||||||||||||||||| |||||
Sbjct: 57778 ctcgtcgtcagggcccagtccgag 57801
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>emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A24 on chromosome 4, complete
              sequence
          Length = 149969

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    cagggcccagaccgagcctg 220
              ||||||||||||||||||||
Sbjct: 107337 cagggcccagaccgagcctg 107356
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>gb|AC159472.6| Mus musculus 10 BAC RP23-244J20 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 213230

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ccaacttctcagttcttttc 72
             ||||||||||||||||||||
Sbjct: 91471 ccaacttctcagttcttttc 91452
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 193      ctcgtcgtcagggcccagaccgag 216
                |||||||||||||||||| |||||
Sbjct: 25697531 ctcgtcgtcagggcccaggccgag 25697508
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 193      ctcgtcgtcagggcccagaccgag 216
                |||||||||||||||||| |||||
Sbjct: 17142313 ctcgtcgtcagggcccaggccgag 17142290



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      gcgccggcgcgccctcgtcg 199
                ||||||||||||||||||||
Sbjct: 16441603 gcgccggcgcgccctcgtcg 16441622
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 193     ctcgtcgtcagggcccagaccgag 216
               |||||||||||||||||| |||||
Sbjct: 8061127 ctcgtcgtcagggcccagtccgag 8061150
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>gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complete sequence
          Length = 176075

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 276    cccggccccgaccccgatcccggcggca 303
              ||||||||||||||||| ||||||||||
Sbjct: 168762 cccggccccgaccccga-cccggcggca 168788
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>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0458E02
          Length = 154458

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 193    ctcgtcgtcagggcccagaccgag 216
              |||||||||||||||||| |||||
Sbjct: 120976 ctcgtcgtcagggcccaggccgag 120953
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>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1361_E02
          Length = 100168

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   ctcgtcgtcagggcccagaccgag 216
             |||||||||||||||||| |||||
Sbjct: 61894 ctcgtcgtcagggcccaggccgag 61917



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   ctcgtcgtcagggcccagaccgag 216
             |||||||||||||||||| |||||
Sbjct: 59462 ctcgtcgtcagggcccaggccgag 59485
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>emb|Z54072.1|HSL261H12 Human DNA sequence from clone LA04NC01-261H12 on chromosome 4, complete
             sequence
          Length = 40198

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   cagggcccagaccgagcctg 220
             ||||||||||||||||||||
Sbjct: 26066 cagggcccagaccgagcctg 26085
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>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete
             sequence
          Length = 226854

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   cggccccgcgccggcgcgccctcg 196
             ||||||||| ||||||||||||||
Sbjct: 43332 cggccccgccccggcgcgccctcg 43355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,276,529
Number of Sequences: 3902068
Number of extensions: 2276529
Number of successful extensions: 41675
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41351
Number of HSP's gapped (non-prelim): 325
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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