ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast09c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 31 0.85
2DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 31 0.85
3GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-C... 28 7.2
4DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-ex... 28 7.2
5LRFN3_HUMAN (Q9BTN0) Leucine-rich repeat and fibronectin type-II... 27 9.4

>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 51  LIPGMPDDVAVDCLARVPHGSYRSMRRVCRGW 146
           LI G+P+D+A  CL R+P+  +   R V   W
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSW 59



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>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 112 DPCGTRARQSTATSSGIPGMRSTWSASHP 26
           D CG     +  T S +P   S WSASHP
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHP 332



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>GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-CH-I 1)|
          Length = 190

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   PKSRVQGWEADHVDLIPGMPDDVAVDCLARVPHGSYRSMRRVCRGW 146
           P  R    E ++ +++  + +DV+ + L   P  + ++M+ +CRG+
Sbjct: 5   PTGRSMSLEQNYTEILSQIGEDVSREGLLDTPKRAAKAMKYLCRGY 50



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>DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-expressed novel|
           gene 3 protein)
          Length = 778

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 112 DPCGTRARQSTATSSGIPGMRSTWSASHP 26
           D C      +T T + +P   S WSASHP
Sbjct: 260 DICIGSELNATKTDNSLPSPSSLWSASHP 288



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>LRFN3_HUMAN (Q9BTN0) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 3 precursor
          Length = 628

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 301 SPPGSGTARARPRRCRC 351
           SPP S T    PRRCRC
Sbjct: 18  SPPQSATPSPCPRRCRC 34


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,872,345
Number of Sequences: 219361
Number of extensions: 299201
Number of successful extensions: 1208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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