ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast09c08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475700.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 687 Score = 105 bits (53), Expect = 1e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 160 tgctcttgctcgccatgttcgccggctcagatgcgatgtactgcgtgtgcaagtcggacg 219 |||||||||| ||||||| | | |||||||||| | || ||||||||||||| | ||| Sbjct: 23 tgctcttgctggccatgtccacaggctcagatggggcgttctgcgtgtgcaagcccgacc 82 Query: 220 cgaacccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 || ||||| ||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 83 agagcccggcggcgatgcagaaggccatcgactacgcgtgctggcgcggcgccgactgca 142 Query: 280 cccagatca 288 ||||||||| Sbjct: 143 cccagatca 151 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 322 tcgtcgcccactgctcctacgcctgcaacagctactaccagaaga 366 ||||||| ||||||||||||||| |||| ||||| |||||||| Sbjct: 185 tcgtcgcgcactgctcctacgccaccaactcctacttccagaaga 229
>dbj|AK101753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063E20, full insert sequence Length = 1020 Score = 105 bits (53), Expect = 1e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 160 tgctcttgctcgccatgttcgccggctcagatgcgatgtactgcgtgtgcaagtcggacg 219 |||||||||| ||||||| | | |||||||||| | || ||||||||||||| | ||| Sbjct: 144 tgctcttgctggccatgtccacaggctcagatggggcgttctgcgtgtgcaagcccgacc 203 Query: 220 cgaacccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 || ||||| ||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 204 agagcccggcggcgatgcagaaggccatcgactacgcgtgctggcgcggcgccgactgca 263 Query: 280 cccagatca 288 ||||||||| Sbjct: 264 cccagatca 272 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 322 tcgtcgcccactgctcctacgcctgcaacagctactaccagaaga 366 ||||||| ||||||||||||||| |||| ||||| |||||||| Sbjct: 306 tcgtcgcgcactgctcctacgccaccaactcctacttccagaaga 350
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 200 ctgcgtgtgcaagtcggacgcgaacccggtggcgatgcagaaggccatcgactacgcgtg 259 ||||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct: 62527 ctgcgtgtgcaagcccgaccagagcccggcggcgatgcagaaggccatcgactacgcgtg 62586 Query: 260 cggcaagggcgccgactgcacccagatca 288 | | |||||||||||||||||||||| Sbjct: 62587 ctggcgcggcgccgactgcacccagatca 62615 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 322 tcgtcgcccactgctcctacgcctgcaacagctactaccagaaga 366 ||||||| ||||||||||||||| |||| ||||| |||||||| Sbjct: 62649 tcgtcgcgcactgctcctacgccaccaactcctacttccagaaga 62693
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 200 ctgcgtgtgcaagtcggacgcgaacccggtggcgatgcagaaggccatcgactacgcgtg 259 ||||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct: 142341 ctgcgtgtgcaagcccgaccagagcccggcggcgatgcagaaggccatcgactacgcgtg 142400 Query: 260 cggcaagggcgccgactgcacccagatca 288 | | |||||||||||||||||||||| Sbjct: 142401 ctggcgcggcgccgactgcacccagatca 142429 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 322 tcgtcgcccactgctcctacgcctgcaacagctactaccagaaga 366 ||||||| ||||||||||||||| |||| ||||| |||||||| Sbjct: 142463 tcgtcgcgcactgctcctacgccaccaactcctacttccagaaga 142507
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 200 ctgcgtgtgcaagtcggacgcgaacccggtggcgatgcagaaggccatcgactacgcgtg 259 ||||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct: 25199686 ctgcgtgtgcaagcccgaccagagcccggcggcgatgcagaaggccatcgactacgcgtg 25199745 Query: 260 cggcaagggcgccgactgcacccagatca 288 | | |||||||||||||||||||||| Sbjct: 25199746 ctggcgcggcgccgactgcacccagatca 25199774 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 341 cgcctgcaacagctactaccagaaga 366 ||||| |||||||||||||||||||| Sbjct: 28731509 cgccttcaacagctactaccagaaga 28731484 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 322 tcgtcgcccactgctcctacgcctgcaacagctactaccagaaga 366 ||||||| ||||||||||||||| |||| ||||| |||||||| Sbjct: 25199808 tcgtcgcgcactgctcctacgccaccaactcctacttccagaaga 25199852
>ref|XM_479043.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 93 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 142
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 24452724 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 24452773
>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ2013_G04 Length = 73667 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 2534 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 2583
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 78591 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 78640
>dbj|AK112017.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A05, full insert sequence Length = 1116 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 204 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 253
>dbj|AK111970.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C09, full insert sequence Length = 1182 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 269 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 318
>dbj|AK111913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126J18, full insert sequence Length = 1119 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 210 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 259
>ref|NM_192939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 335 ctcctacgcctgcaacagctactaccagaaga 366 ||||||||||| |||||||||||||||||||| Sbjct: 411 ctcctacgccttcaacagctactaccagaaga 442
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 335 ctcctacgcctgcaacagctactaccagaaga 366 ||||||||||| |||||||||||||||||||| Sbjct: 25268622 ctcctacgccttcaacagctactaccagaaga 25268653 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 330 cactgctcctacgcctgcaacagctactaccag 362 ||||||||||||||| ||||||||||| |||| Sbjct: 32139958 cactgctcctacgccgccaacagctacttccag 32139926
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158C05 Length = 145514 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 335 ctcctacgcctgcaacagctactaccagaaga 366 ||||||||||| |||||||||||||||||||| Sbjct: 65666 ctcctacgccttcaacagctactaccagaaga 65697
>dbj|AK063308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F12, full insert sequence Length = 1275 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 335 ctcctacgcctgcaacagctactaccagaaga 366 ||||||||||| |||||||||||||||||||| Sbjct: 484 ctcctacgccttcaacagctactaccagaaga 515
>gb|AC009475.5| Homo sapiens BAC clone RP11-285F23 from 2, complete sequence Length = 190349 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 1 actgcacaccaccaccccactccactctctc 31 ||||||| ||||||||||||||||||||||| Sbjct: 188331 actgcaccccaccaccccactccactctctc 188361
>gb|BT017886.1| Zea mays clone EL01N0514G06.c mRNA sequence Length = 1129 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Plus Query: 230 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgc 278 |||||||||| ||| ||||||||||| |||| |||||| ||||||||| Sbjct: 229 ggcgatgcaggcggcgatcgactacgcctgcgccaagggggccgactgc 277 Score = 48.1 bits (24), Expect = 0.020 Identities = 30/32 (93%) Strand = Plus / Plus Query: 332 ctgctcctacgcctgcaacagctactaccaga 363 |||||||||| |||||||||||||||||||| Sbjct: 331 ctgctcctacatctgcaacagctactaccaga 362
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.020 Identities = 54/64 (84%) Strand = Plus / Plus Query: 225 ccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgcacccag 284 |||| ||||||||||||||| || ||||||||||| | ||||||||||||||||| Sbjct: 3468411 ccggcggcgatgcagaaggcaattgactacgcgtgttggcgcagcgccgactgcacccag 3468470 Query: 285 atca 288 |||| Sbjct: 3468471 atca 3468474
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 48.1 bits (24), Expect = 0.020 Identities = 54/64 (84%) Strand = Plus / Plus Query: 225 ccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgcacccag 284 |||| ||||||||||||||| || ||||||||||| | ||||||||||||||||| Sbjct: 85115 ccggcggcgatgcagaaggcaattgactacgcgtgttggcgcagcgccgactgcacccag 85174 Query: 285 atca 288 |||| Sbjct: 85175 atca 85178
>gb|AY110724.1| Zea mays CL16591_1 mRNA sequence Length = 915 Score = 48.1 bits (24), Expect = 0.020 Identities = 33/36 (91%) Strand = Plus / Minus Query: 327 gcccactgctcctacgcctgcaacagctactaccag 362 |||||||||||||||||| |||||||| ||||||| Sbjct: 606 gcccactgctcctacgccgccaacagcttctaccag 571
>gb|AY110150.1| Zea mays CL16078_1 mRNA sequence Length = 1241 Score = 48.1 bits (24), Expect = 0.020 Identities = 30/32 (93%) Strand = Plus / Plus Query: 332 ctgctcctacgcctgcaacagctactaccaga 363 |||||||||| |||||||||||||||||||| Sbjct: 267 ctgctcctacatctgcaacagctactaccaga 298
>ref|XM_469816.1| Oryza sativa (japonica cultivar-group), mRNA Length = 754 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Plus Query: 249 gactacgcgtgcggcaagggcgccgactgca 279 ||||||||||||||| | ||||||||||||| Sbjct: 127 gactacgcgtgcggcgacggcgccgactgca 157
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 46.1 bits (23), Expect = 0.079 Identities = 41/47 (87%) Strand = Plus / Minus Query: 319 ccgtcgtcgcccactgctcctacgcctgcaacagctactaccagaag 365 |||||| |||||||||||||| ||| ||||||||||| ||||||| Sbjct: 106183 ccgtcgccgcccactgctcctgggccgccaacagctacttccagaag 106137
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Minus Query: 249 gactacgcgtgcggcaagggcgccgactgca 279 ||||||||||||||| | ||||||||||||| Sbjct: 30914600 gactacgcgtgcggcgacggcgccgactgca 30914570 Score = 46.1 bits (23), Expect = 0.079 Identities = 41/47 (87%) Strand = Plus / Minus Query: 319 ccgtcgtcgcccactgctcctacgcctgcaacagctactaccagaag 365 |||||| |||||||||||||| ||| ||||||||||| ||||||| Sbjct: 17383806 ccgtcgccgcccactgctcctgggccgccaacagctacttccagaag 17383760
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Plus Query: 249 gactacgcgtgcggcaagggcgccgactgca 279 ||||||||||||||| | ||||||||||||| Sbjct: 28490 gactacgcgtgcggcgacggcgccgactgca 28520
>gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, complete sequence Length = 216320 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Plus Query: 146 tcctctggtcctcatgctcttgc 168 ||||||||||||||||||||||| Sbjct: 49892 tcctctggtcctcatgctcttgc 49914
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Minus Query: 249 gactacgcgtgcggcaagggcgccgactgca 279 ||||||||||||||| | ||||||||||||| Sbjct: 31005123 gactacgcgtgcggcgacggcgccgactgca 31005093 Score = 46.1 bits (23), Expect = 0.079 Identities = 41/47 (87%) Strand = Plus / Minus Query: 319 ccgtcgtcgcccactgctcctacgcctgcaacagctactaccagaag 365 |||||| |||||||||||||| ||| ||||||||||| ||||||| Sbjct: 17377347 ccgtcgccgcccactgctcctgggccgccaacagctacttccagaag 17377301
>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete sequence Length = 245536 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Minus Query: 146 tcctctggtcctcatgctcttgc 168 ||||||||||||||||||||||| Sbjct: 81103 tcctctggtcctcatgctcttgc 81081
>dbj|AK103836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G11, full insert sequence Length = 820 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Plus Query: 249 gactacgcgtgcggcaagggcgccgactgca 279 ||||||||||||||| | ||||||||||||| Sbjct: 211 gactacgcgtgcggcgacggcgccgactgca 241
>dbj|AK099491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026N15, full insert sequence Length = 926 Score = 46.1 bits (23), Expect = 0.079 Identities = 41/47 (87%) Strand = Plus / Plus Query: 319 ccgtcgtcgcccactgctcctacgcctgcaacagctactaccagaag 365 |||||| |||||||||||||| ||| ||||||||||| ||||||| Sbjct: 289 ccgtcgccgcccactgctcctgggccgccaacagctacttccagaag 335
>ref|XM_475945.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 846 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 341 cgcctgcaacagctactaccagaaga 366 ||||| |||||||||||||||||||| Sbjct: 471 cgccttcaacagctactaccagaaga 496
>gb|BT017148.1| Zea mays clone EL01N0366H12.c mRNA sequence Length = 902 Score = 44.1 bits (22), Expect = 0.31 Identities = 40/46 (86%) Strand = Plus / Plus Query: 319 ccgtcgtcgcccactgctcctacgcctgcaacagctactaccagaa 364 |||||| ||| |||||||||| ||| |||||||||||||||||| Sbjct: 119 ccgtcgccgcgcactgctcctgggccgccaacagctactaccagaa 164
>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11, complete sequence Length = 112796 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 341 cgcctgcaacagctactaccagaaga 366 ||||| |||||||||||||||||||| Sbjct: 50222 cgccttcaacagctactaccagaaga 50197
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 cgagagaagagctcgagctcca 120 |||||||||||||||||||||| Sbjct: 12191283 cgagagaagagctcgagctcca 12191262 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 21983354 tcgcccacgcctcctacgccttcaacagctact 21983322
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 cgagagaagagctcgagctcca 120 |||||||||||||||||||||| Sbjct: 102742 cgagagaagagctcgagctcca 102721
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 cgagagaagagctcgagctcca 120 |||||||||||||||||||||| Sbjct: 125662 cgagagaagagctcgagctcca 125641
>dbj|AK109090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A02, full insert sequence Length = 1233 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 341 cgcctgcaacagctactaccagaaga 366 ||||| |||||||||||||||||||| Sbjct: 581 cgccttcaacagctactaccagaaga 606
>ref|NM_191356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 510 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 330 cactgctcctacgcctgcaacagctactaccag 362 ||||||||||||||| ||||||||||| |||| Sbjct: 202 cactgctcctacgccgccaacagctacttccag 234
>ref|XM_473861.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2742 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 2294 tcgcccacgcctcctacgccttcaacagctact 2262
>gb|BT017188.1| Zea mays clone EL01N0370G02.c mRNA sequence Length = 679 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 235 tgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 279 |||||||||| | ||||||||||||||| ||||||||||||| Sbjct: 132 tgcagaaggcactggactacgcgtgcggcgccggcgccgactgca 176 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 327 gcccactgctcctacgcctgcaacagctactaccag 362 ||||| |||||||||||| |||||||| ||||||| Sbjct: 224 gcccagtgctcctacgccgtcaacagcttctaccag 259
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 330 cactgctcctacgcctgcaacagctactaccag 362 ||||||||||||||| |||||||| ||||||| Sbjct: 82727 cactgctcctacgccgtcaacagcttctaccag 82695
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence Length = 216902 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 7 caccaccaccccactccactctctcccac 35 ||||||||||||||||||| ||| ||||| Sbjct: 176939 caccaccaccccactccaccctcccccac 176911
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 58506 tcgcccacgcctcctacgccttcaacagctact 58474
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 31076425 tcgcccacgcctcctacgccttcaacagctact 31076393
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 330 cactgctcctacgcctgcaacagctactaccag 362 ||||||||||||||| ||||||||||| |||| Sbjct: 10711 cactgctcctacgccgccaacagctacttccag 10679
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 25418 tcgcccacgcctcctacgccttcaacagctact 25386
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 114071 tcgcccacgcctcctacgccttcaacagctact 114039
>dbj|AK108127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D06, full insert sequence Length = 954 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 330 cactgctcctacgcctgcaacagctactaccag 362 ||||||||||||||| ||||||||||| |||| Sbjct: 307 cactgctcctacgccgccaacagctacttccag 339
>dbj|AK060663.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B06, full insert sequence Length = 1448 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 325 tcgcccactgctcctacgcctgcaacagctact 357 |||||||| ||||||||||| ||||||||||| Sbjct: 989 tcgcccacgcctcctacgccttcaacagctact 1021
>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library) contains Bmx gene, complete sequence Length = 159446 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 tcctctggtcctcatgctctt 166 ||||||||||||||||||||| Sbjct: 118659 tcctctggtcctcatgctctt 118679
>gb|AC121498.12| Mus musculus chromosome 1, clone RP23-38P22, complete sequence Length = 152264 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 ctccctccccctctttgcttgcca 73 |||||||||||| ||||||||||| Sbjct: 26374 ctccctccccctttttgcttgcca 26351
>ref|XM_464085.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1850 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 1421 caacagctactaccagaaga 1440
>ref|XM_506715.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0026E05.37 mRNA Length = 2462 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 1931 caacagctactaccagaaga 1950
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 ggtggcgatgcagaaggccatcga 250 |||||||||||||||| ||||||| Sbjct: 3846413 ggtggcgatgcagaagtccatcga 3846390
>emb|AL049794.16|HSDJ777L9 Human DNA sequence from clone RP4-777L9 on chromosome 20 Contains the 5' end of the C20orf23 gene for a novel protein similar to KIF1 type and other kinesin-like proteins, the RPLP0P1 gene for ribosomal protein large P0 pseudogene 1 and a CpG island, complete sequence Length = 119696 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 ccactccactctctcccacgccac 40 ||||||||||||||||||| |||| Sbjct: 78560 ccactccactctctcccactccac 78583
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cacaccaccaccccactcca 24 |||||||||||||||||||| Sbjct: 67307 cacaccaccaccccactcca 67326
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172284 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cacaccaccaccccactcca 24 |||||||||||||||||||| Sbjct: 58902 cacaccaccaccccactcca 58883
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 2100286 caacagctactaccagaaga 2100305
>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence Length = 212548 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ctctggtcctcatgctcttg 167 |||||||||||||||||||| Sbjct: 111965 ctctggtcctcatgctcttg 111946
>gb|AC078991.21| Homo sapiens Xp BAC RP11-459A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169819 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 caccccactccactctctcc 32 |||||||||||||||||||| Sbjct: 115143 caccccactccactctctcc 115162
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 150494 caacagctactaccagaaga 150513
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 14979 caacagctactaccagaaga 14998
>dbj|AK101322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034E16, full insert sequence Length = 2462 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 1931 caacagctactaccagaaga 1950
>dbj|AK072088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O04, full insert sequence Length = 1849 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caacagctactaccagaaga 366 |||||||||||||||||||| Sbjct: 1420 caacagctactaccagaaga 1439
>gb|AE003477.3| Drosophila melanogaster chromosome 3L, section 11 of 83 of the complete sequence Length = 297894 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cacaccaccaccccactcca 24 |||||||||||||||||||| Sbjct: 267967 cacaccaccaccccactcca 267948 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,676,357 Number of Sequences: 3902068 Number of extensions: 2676357 Number of successful extensions: 57615 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57016 Number of HSP's gapped (non-prelim): 594 length of query: 366 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 344 effective length of database: 17,147,199,772 effective search space: 5898636721568 effective search space used: 5898636721568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
