ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast09b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 6e-27
2ref|XM_468526.1| Oryza sativa (japonica cultivar-group), mRNA 100 6e-18
3ref|XM_507554.1| PREDICTED Oryza sativa (japonica cultivar-group... 100 6e-18
4ref|XM_468525.1| Oryza sativa (japonica cultivar-group), mRNA 100 6e-18
5ref|XM_507553.1| PREDICTED Oryza sativa (japonica cultivar-group... 100 6e-18
6ref|XM_507067.2| PREDICTED Oryza sativa (japonica cultivar-group... 100 6e-18
7dbj|AK122029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
8dbj|AK104532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
9dbj|AK104364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
10dbj|AK065244.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
11dbj|AK064830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
13dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
14emb|AL929553.6| Mouse DNA sequence from clone RP24-316B1 on chro... 42 1.1
15gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.1
16gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 42 1.1
17gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 4.5
18gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
19ref|XM_843002.1| Leishmania major strain Friedlin protein kinase... 40 4.5
20ref|XM_533115.2| PREDICTED: Canis familiaris similar to tweety 2... 40 4.5
21emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 4.5
22emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 4.5
23emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4,... 40 4.5
24dbj|AB158483.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1... 40 4.5
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
27dbj|AK109196.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
28dbj|AK072257.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
29gb|AY105688.1| Zea mays PCO142867 mRNA sequence 40 4.5
30gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.5
31gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5

>dbj|AK065885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A06, full
            insert sequence
          Length = 3391

 Score =  129 bits (65), Expect = 6e-27
 Identities = 134/157 (85%)
 Strand = Plus / Plus

                                                                        
Query: 176  ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcgatc 235
            ||||||| ||||||||| | || ||||||||||||||  |||||||||||||||||||||
Sbjct: 2248 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcgatc 2307

                                                                        
Query: 236  accggtgcatcgactgtgccacctgcaggtggatggctccggaggtgttcaagagagtcg 295
            |||| |||||||||||    |||||| | |||||||| ||||||||||||||||| || |
Sbjct: 2308 accgatgcatcgactgccagacctgccgctggatggcgccggaggtgttcaagagggtgg 2367

                                                 
Query: 296  acggccagtccgccgtggcggcgcaacccacctccga 332
            ||||  |  |||||||||| ||||| |||| ||||||
Sbjct: 2368 acggaaaagccgccgtggccgcgcatcccatctccga 2404



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>ref|XM_468526.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1144

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 159 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 218

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 219 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 278

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 279 cagcccatctccga 292



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>ref|XM_507554.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2
           mRNA
          Length = 1218

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 284 cagcccatctccga 297



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>ref|XM_468525.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1218

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 284 cagcccatctccga 297



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>ref|XM_507553.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2
           mRNA
          Length = 1334

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 163 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 222

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 223 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 282

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 283 cagcccatctccga 296



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>ref|XM_507067.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2
           mRNA
          Length = 1381

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 210 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 269

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 270 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 329

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 330 cagcccatctccga 343



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>dbj|AK122029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112F11, full
           insert sequence
          Length = 1381

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 210 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 269

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 270 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 329

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 330 cagcccatctccga 343



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>dbj|AK104532.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C07, full
           insert sequence
          Length = 1218

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 284 cagcccatctccga 297



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>dbj|AK104364.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C11, full
           insert sequence
          Length = 1218

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 284 cagcccatctccga 297



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>dbj|AK065244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I14, full
           insert sequence
          Length = 1142

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 157 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 216

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 217 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 276

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 277 cagcccatctccga 290



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>dbj|AK064830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F10, full
           insert sequence
          Length = 1335

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 113/134 (84%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258
           ||||||||||||||  ||||||||||||||||||||||||| |||||||| ||    |||
Sbjct: 163 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 222

                                                                       
Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318
           ||| | ||||||||| |||||||||||||||| || |||||  |  ||||||| || |||
Sbjct: 223 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 282

                         
Query: 319 caacccacctccga 332
           || |||| ||||||
Sbjct: 283 cagcccatctccga 296



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 176      ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcg 232
                ||||||| ||||||||| | || ||||||||||||||  ||||||||||||||||||
Sbjct: 35685914 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcg 35685858



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 199      cgcccgcagaacgtgtccggcgacttcttcgtcg 232
                ||||||||||||||  ||||||||||||||||||
Sbjct: 35681862 cgcccgcagaacgtccccggcgacttcttcgtcg 35681829



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 276      ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccga 332
                ||||||||||||||| || |||||  |  |||||||||| ||||| |||| ||||||
Sbjct: 35685641 ggaggtgttcaagagggtggacggaaaagccgccgtggccgcgcatcccatctccga 35685585



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>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_D06
          Length = 102239

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 176   ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcg 232
             ||||||| ||||||||| | || ||||||||||||||  ||||||||||||||||||
Sbjct: 46528 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcg 46472



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 199   cgcccgcagaacgtgtccggcgacttcttcgtcg 232
             ||||||||||||||  ||||||||||||||||||
Sbjct: 42476 cgcccgcagaacgtccccggcgacttcttcgtcg 42443



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 276   ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccga 332
             ||||||||||||||| || |||||  |  |||||||||| ||||| |||| ||||||
Sbjct: 46255 ggaggtgttcaagagggtggacggaaaagccgccgtggccgcgcatcccatctccga 46199



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>emb|AL929553.6| Mouse DNA sequence from clone RP24-316B1 on chromosome 4 Contains the 5'
              end of a variant of the Ptprd gene for receptor type
              protein tyrosine phosphatase D and a CpG island, complete
              sequence
          Length = 163370

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     actagagacagaaaacttcac 54
              |||||||||||||||||||||
Sbjct: 156884 actagagacagaaaacttcac 156904



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 95      ccctcgccgccccgccggctc 115
               |||||||||||||||||||||
Sbjct: 1333823 ccctcgccgccccgccggctc 1333803



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 223     ttcttcgtcgatcaccggtgc 243
               |||||||||||||||||||||
Sbjct: 1961780 ttcttcgtcgatcaccggtgc 1961760



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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gtggatggctccggaggtgt 283
              ||||||||||||||||||||
Sbjct: 573686 gtggatggctccggaggtgt 573705



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>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0480H08, complete sequence
          Length = 156301

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 100   gccgccccgccggctca-cctgcgtccgcgcc 130
             |||||||||||| |||| ||||||||||||||
Sbjct: 82235 gccgccccgccgtctcaacctgcgtccgcgcc 82204



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>ref|XM_843002.1| Leishmania major strain Friedlin protein kinase (LMJ_0398) partial
            mRNA
          Length = 4557

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  gtggatggctccggaggtgt 283
            ||||||||||||||||||||
Sbjct: 2091 gtggatggctccggaggtgt 2110



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>ref|XM_533115.2| PREDICTED: Canis familiaris similar to tweety 2 isoform 1
           (LOC475908), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 gtcccctcccccggcgctcg 187
           ||||||||||||||||||||
Sbjct: 50  gtcccctcccccggcgctcg 31



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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    acttcttcgtcgatcaccgg 240
              ||||||||||||||||||||
Sbjct: 302231 acttcttcgtcgatcaccgg 302212



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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 293    tcgacggccagtccgccgtggcggcgca 320
              |||||| ||||||||||| |||||||||
Sbjct: 191887 tcgacgaccagtccgccggggcggcgca 191914



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>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08,
             complete sequence
          Length = 148860

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ccaccacatccctcgccgcc 105
             ||||||||||||||||||||
Sbjct: 85058 ccaccacatccctcgccgcc 85039



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>dbj|AB158483.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S
             rRNA, complete sequence, clone:BAC clone H1D17
          Length = 98410

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 241   tgcatcgactgtgccacctgcaggtggatggc 272
             |||||||||||||  |||||| ||||||||||
Sbjct: 51397 tgcatcgactgtgatacctgccggtggatggc 51428



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 86       ccaccacatccctcgccgcc 105
                ||||||||||||||||||||
Sbjct: 31388250 ccaccacatccctcgccgcc 31388231



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 100      gccgccccgccggctca-cctgcgtccgcgcc 130
                |||||||||||| |||| ||||||||||||||
Sbjct: 21324763 gccgccccgccgtctcaacctgcgtccgcgcc 21324732



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>dbj|AK109196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B09, full
           insert sequence
          Length = 627

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ccaccacatccctcgccgcc 105
           ||||||||||||||||||||
Sbjct: 75  ccaccacatccctcgccgcc 94



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>dbj|AK072257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H18, full
           insert sequence
          Length = 1804

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                           
Query: 100 gccgccccgccggctca-cctgcgtccgcgcc 130
           |||||||||||| |||| ||||||||||||||
Sbjct: 120 gccgccccgccgtctcaacctgcgtccgcgcc 151



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>gb|AY105688.1| Zea mays PCO142867 mRNA sequence
          Length = 1374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 256  acctgcaggtggatggctccggag 279
            |||| |||||||||||||||||||
Sbjct: 1097 acctacaggtggatggctccggag 1120



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    cggccagtccgccgtggcgg 316
              ||||||||||||||||||||
Sbjct: 336668 cggccagtccgccgtggcgg 336687



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 100      gccgccccgccggctca-cctgcgtccgcgcc 130
                |||||||||||| |||| ||||||||||||||
Sbjct: 21634962 gccgccccgccgtctcaacctgcgtccgcgcc 21634931


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,363,808
Number of Sequences: 3902068
Number of extensions: 2363808
Number of successful extensions: 46137
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 45914
Number of HSP's gapped (non-prelim): 228
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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