| Clone Name | bast09b05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A06, full insert sequence Length = 3391 Score = 129 bits (65), Expect = 6e-27 Identities = 134/157 (85%) Strand = Plus / Plus Query: 176 ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcgatc 235 ||||||| ||||||||| | || |||||||||||||| ||||||||||||||||||||| Sbjct: 2248 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcgatc 2307 Query: 236 accggtgcatcgactgtgccacctgcaggtggatggctccggaggtgttcaagagagtcg 295 |||| ||||||||||| |||||| | |||||||| ||||||||||||||||| || | Sbjct: 2308 accgatgcatcgactgccagacctgccgctggatggcgccggaggtgttcaagagggtgg 2367 Query: 296 acggccagtccgccgtggcggcgcaacccacctccga 332 |||| | |||||||||| ||||| |||| |||||| Sbjct: 2368 acggaaaagccgccgtggccgcgcatcccatctccga 2404
>ref|XM_468526.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1144 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 159 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 218 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 219 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 278 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 279 cagcccatctccga 292
>ref|XM_507554.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1218 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 284 cagcccatctccga 297
>ref|XM_468525.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 284 cagcccatctccga 297
>ref|XM_507553.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1334 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 163 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 222 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 223 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 282 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 283 cagcccatctccga 296
>ref|XM_507067.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_D06.11-2 mRNA Length = 1381 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 210 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 269 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 270 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 329 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 330 cagcccatctccga 343
>dbj|AK122029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112F11, full insert sequence Length = 1381 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 210 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 269 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 270 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 329 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 330 cagcccatctccga 343
>dbj|AK104532.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C07, full insert sequence Length = 1218 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 284 cagcccatctccga 297
>dbj|AK104364.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C11, full insert sequence Length = 1218 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 164 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 223 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 224 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 283 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 284 cagcccatctccga 297
>dbj|AK065244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I14, full insert sequence Length = 1142 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 157 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 216 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 217 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 276 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 277 cagcccatctccga 290
>dbj|AK064830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F10, full insert sequence Length = 1335 Score = 99.6 bits (50), Expect = 6e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcgatcaccggtgcatcgactgtgccacc 258 |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||| Sbjct: 163 cgcccgcagaacgtccccggcgacttcttcgtcgatcaccgatgcatcgattgccagacc 222 Query: 259 tgcaggtggatggctccggaggtgttcaagagagtcgacggccagtccgccgtggcggcg 318 ||| | ||||||||| |||||||||||||||| || ||||| | ||||||| || ||| Sbjct: 223 tgccgctggatggcttcggaggtgttcaagagggtggacggaaaagccgccgtcgccgcg 282 Query: 319 caacccacctccga 332 || |||| |||||| Sbjct: 283 cagcccatctccga 296
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 8e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 176 ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcg 232 ||||||| ||||||||| | || |||||||||||||| |||||||||||||||||| Sbjct: 35685914 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcg 35685858 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcg 232 |||||||||||||| |||||||||||||||||| Sbjct: 35681862 cgcccgcagaacgtccccggcgacttcttcgtcg 35681829 Score = 42.1 bits (21), Expect = 1.1 Identities = 48/57 (84%) Strand = Plus / Minus Query: 276 ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccga 332 ||||||||||||||| || ||||| | |||||||||| ||||| |||| |||||| Sbjct: 35685641 ggaggtgttcaagagggtggacggaaaagccgccgtggccgcgcatcccatctccga 35685585
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 65.9 bits (33), Expect = 8e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 176 ccccggcgctcgacagcaggcggcgcccgcagaacgtgtccggcgacttcttcgtcg 232 ||||||| ||||||||| | || |||||||||||||| |||||||||||||||||| Sbjct: 46528 ccccggcactcgacagcggccgccgcccgcagaacgtccccggcgacttcttcgtcg 46472 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 199 cgcccgcagaacgtgtccggcgacttcttcgtcg 232 |||||||||||||| |||||||||||||||||| Sbjct: 42476 cgcccgcagaacgtccccggcgacttcttcgtcg 42443 Score = 42.1 bits (21), Expect = 1.1 Identities = 48/57 (84%) Strand = Plus / Minus Query: 276 ggaggtgttcaagagagtcgacggccagtccgccgtggcggcgcaacccacctccga 332 ||||||||||||||| || ||||| | |||||||||| ||||| |||| |||||| Sbjct: 46255 ggaggtgttcaagagggtggacggaaaagccgccgtggccgcgcatcccatctccga 46199
>emb|AL929553.6| Mouse DNA sequence from clone RP24-316B1 on chromosome 4 Contains the 5' end of a variant of the Ptprd gene for receptor type protein tyrosine phosphatase D and a CpG island, complete sequence Length = 163370 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 actagagacagaaaacttcac 54 ||||||||||||||||||||| Sbjct: 156884 actagagacagaaaacttcac 156904
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ccctcgccgccccgccggctc 115 ||||||||||||||||||||| Sbjct: 1333823 ccctcgccgccccgccggctc 1333803
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ttcttcgtcgatcaccggtgc 243 ||||||||||||||||||||| Sbjct: 1961780 ttcttcgtcgatcaccggtgc 1961760
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gtggatggctccggaggtgt 283 |||||||||||||||||||| Sbjct: 573686 gtggatggctccggaggtgt 573705
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08, complete sequence Length = 156301 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 100 gccgccccgccggctca-cctgcgtccgcgcc 130 |||||||||||| |||| |||||||||||||| Sbjct: 82235 gccgccccgccgtctcaacctgcgtccgcgcc 82204
>ref|XM_843002.1| Leishmania major strain Friedlin protein kinase (LMJ_0398) partial mRNA Length = 4557 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gtggatggctccggaggtgt 283 |||||||||||||||||||| Sbjct: 2091 gtggatggctccggaggtgt 2110
>ref|XM_533115.2| PREDICTED: Canis familiaris similar to tweety 2 isoform 1 (LOC475908), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtcccctcccccggcgctcg 187 |||||||||||||||||||| Sbjct: 50 gtcccctcccccggcgctcg 31
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 acttcttcgtcgatcaccgg 240 |||||||||||||||||||| Sbjct: 302231 acttcttcgtcgatcaccgg 302212
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 293 tcgacggccagtccgccgtggcggcgca 320 |||||| ||||||||||| ||||||||| Sbjct: 191887 tcgacgaccagtccgccggggcggcgca 191914
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccaccacatccctcgccgcc 105 |||||||||||||||||||| Sbjct: 85058 ccaccacatccctcgccgcc 85039
>dbj|AB158483.1| Cyanidioschyzon merolae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence, clone:BAC clone H1D17 Length = 98410 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 241 tgcatcgactgtgccacctgcaggtggatggc 272 ||||||||||||| |||||| |||||||||| Sbjct: 51397 tgcatcgactgtgatacctgccggtggatggc 51428
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccaccacatccctcgccgcc 105 |||||||||||||||||||| Sbjct: 31388250 ccaccacatccctcgccgcc 31388231
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 100 gccgccccgccggctca-cctgcgtccgcgcc 130 |||||||||||| |||| |||||||||||||| Sbjct: 21324763 gccgccccgccgtctcaacctgcgtccgcgcc 21324732
>dbj|AK109196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-B09, full insert sequence Length = 627 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccaccacatccctcgccgcc 105 |||||||||||||||||||| Sbjct: 75 ccaccacatccctcgccgcc 94
>dbj|AK072257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H18, full insert sequence Length = 1804 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 100 gccgccccgccggctca-cctgcgtccgcgcc 130 |||||||||||| |||| |||||||||||||| Sbjct: 120 gccgccccgccgtctcaacctgcgtccgcgcc 151
>gb|AY105688.1| Zea mays PCO142867 mRNA sequence Length = 1374 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 acctgcaggtggatggctccggag 279 |||| ||||||||||||||||||| Sbjct: 1097 acctacaggtggatggctccggag 1120
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cggccagtccgccgtggcgg 316 |||||||||||||||||||| Sbjct: 336668 cggccagtccgccgtggcgg 336687
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 100 gccgccccgccggctca-cctgcgtccgcgcc 130 |||||||||||| |||| |||||||||||||| Sbjct: 21634962 gccgccccgccgtctcaacctgcgtccgcgcc 21634931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,363,808 Number of Sequences: 3902068 Number of extensions: 2363808 Number of successful extensions: 46137 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 45914 Number of HSP's gapped (non-prelim): 228 length of query: 338 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 316 effective length of database: 17,147,199,772 effective search space: 5418515127952 effective search space used: 5418515127952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)