ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast09a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group... 64 2e-07
2ref|XM_467513.1| Oryza sativa (japonica cultivar-group), mRNA 64 2e-07
3ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group... 64 2e-07
4dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
5dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
7dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
8dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
9ref|NM_192718.1| Oryza sativa (japonica cultivar-group), predic... 42 0.76
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
11dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
12gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, comple... 40 3.0
13gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Canc... 40 3.0
14gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome... 40 3.0
15ref|XM_215469.3| PREDICTED: Rattus norvegicus microtubule-associ... 40 3.0
16emb|X60370.1|RRMAP1B5 R.norvegicus mRNA for microtubule associat... 40 3.0
17gb|AC164438.3| Mus musculus BAC clone RP23-62L19 from chromosome... 40 3.0
18emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chro... 40 3.0 
>ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA
          Length = 1716

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                        
Query: 87   gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 146
            ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 1568 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 1509

                                        
Query: 147  aaccacaggcatggcccgtgctcgccgg 174
            |||||| |||| || || ||||||||||
Sbjct: 1508 aaccaccggcacgggccatgctcgccgg 1481
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>ref|XM_467513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 87  gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 146
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 149 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 208

                                       
Query: 147 aaccacaggcatggcccgtgctcgccgg 174
           |||||| |||| || || ||||||||||
Sbjct: 209 aaccaccggcacgggccatgctcgccgg 236
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>ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19
           mRNA
          Length = 1737

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 87  gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 146
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 155 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 214

                                       
Query: 147 aaccacaggcatggcccgtgctcgccgg 174
           |||||| |||| || || ||||||||||
Sbjct: 215 aaccaccggcacgggccatgctcgccgg 242
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>dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G11, full
           insert sequence
          Length = 1716

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 87  gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 146
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 149 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 208

                                       
Query: 147 aaccacaggcatggcccgtgctcgccgg 174
           |||||| |||| || || ||||||||||
Sbjct: 209 aaccaccggcacgggccatgctcgccgg 236
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>dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076I21, full
           insert sequence
          Length = 1736

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 87  gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 146
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 154 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 213

                                       
Query: 147 aaccacaggcatggcccgtgctcgccgg 174
           |||||| |||| || || ||||||||||
Sbjct: 214 aaccaccggcacgggccatgctcgccgg 241
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                            
Query: 115      cgtcgtcgtccagtggagccacggtgccgttgaaccacaggcatggcccgtgctcgccgg 174
                |||||||||  |||||| |||||||| ||||||||||| |||| || || ||||||||||
Sbjct: 29912535 cgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccgg 29912476
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654B04
          Length = 156907

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 115   cgtcgtcgtccagtggagccacggtgccgttgaaccacaggcatggcccgtgctcgccgg 174
             |||||||||  |||||| |||||||| ||||||||||| |||| || || ||||||||||
Sbjct: 12811 cgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccgg 12752
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_D06
          Length = 112768

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 115   cgtcgtcgtccagtggagccacggtgccgttgaaccacaggcatggcccgtgctcgccgg 174
             |||||||||  |||||| |||||||| ||||||||||| |||| || || ||||||||||
Sbjct: 69500 cgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccgg 69441
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>ref|NM_192718.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1413

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 200 cgaggagcggctccgccgtgacacgctccgagc 232
           |||||||| |||||||||||||  |||||||||
Sbjct: 228 cgaggagctgctccgccgtgaccagctccgagc 260
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 200      cgaggagcggctccgccgtgacacgctccgagc 232
                |||||||| |||||||||||||  |||||||||
Sbjct: 24014867 cgaggagctgctccgccgtgaccagctccgagc 24014899
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0090K04
          Length = 152556

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 200    cgaggagcggctccgccgtgacacgctccgagc 232
              |||||||| |||||||||||||  |||||||||
Sbjct: 129389 cgaggagctgctccgccgtgaccagctccgagc 129421
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>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence
          Length = 214229

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   acggtgccgttgaaccacag 154
             ||||||||||||||||||||
Sbjct: 82230 acggtgccgttgaaccacag 82211
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>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     ccagtgcagcgggtgagcagagct 51
              ||||||||| ||||||||||||||
Sbjct: 111378 ccagtgcagtgggtgagcagagct 111355
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>gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome 9, complete sequence
          Length = 179606

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    gaaccacaggcatggcccgt 165
              ||||||||||||||||||||
Sbjct: 110310 gaaccacaggcatggcccgt 110291
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>ref|XM_215469.3| PREDICTED: Rattus norvegicus microtubule-associated protein 1b
            (Map1b), mRNA
          Length = 10491

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gcccaccaagaaggagccta 195
            ||||||||||||||||||||
Sbjct: 2447 gcccaccaagaaggagccta 2466
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>emb|X60370.1|RRMAP1B5 R.norvegicus mRNA for microtubule associated protein IB
          Length = 7095

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  gcccaccaagaaggagccta 195
            ||||||||||||||||||||
Sbjct: 1995 gcccaccaagaaggagccta 2014
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>gb|AC164438.3| Mus musculus BAC clone RP23-62L19 from chromosome 9, complete sequence
          Length = 205793

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    gaaccacaggcatggcccgt 165
              ||||||||||||||||||||
Sbjct: 114792 gaaccacaggcatggcccgt 114811
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>emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chromosome 9, complete
             sequence
          Length = 219201

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   gaaccacaggcatggcccgt 165
             ||||||||||||||||||||
Sbjct: 92364 gaaccacaggcatggcccgt 92345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,290,080
Number of Sequences: 3902068
Number of extensions: 1290080
Number of successful extensions: 22100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22033
Number of HSP's gapped (non-prelim): 62
length of query: 235
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 213
effective length of database: 17,147,199,772
effective search space: 3652353551436
effective search space used: 3652353551436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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