ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast08h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 379 e-102
2dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic D... 379 e-102
3dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
4dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 379 e-102
5gb|AY105347.1| Zea mays PCO089398 mRNA sequence 299 3e-78
6gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome... 155 1e-34
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
8ref|XM_463861.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
10dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
11dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.1
13gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.1
14gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.1
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
16emb|BX817236.1|CNS0ABN7 Arabidopsis thaliana Full-length cDNA Co... 42 1.1
17gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.1
19ref|XM_475002.1| Oryza sativa (japonica cultivar-group), predic... 40 4.5
20ref|NM_197089.1| Oryza sativa (japonica cultivar-group) hypothet... 40 4.5
21gb|AY743675.1| Bos taurus alpha-1 type II collagen (COL2A1) gene... 40 4.5
22gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 4.5
23gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 4.5
24gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa... 40 4.5
25emb|AJ697714.1| Pseudomonas aeruginosa partial aph gene for acid... 40 4.5
26gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 40 4.5
27gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genom... 40 4.5
28gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 4.5
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
30gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Pa... 40 4.5
31dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 40 4.5
32gb|DQ180314.1| Fragaria x ananassa clone PBCESTFXA9 SSR marker 40 4.5
33gb|U22894.1|SLU22894 Streptomyces lividans amplifiable element AUD1 40 4.5
34gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
35gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 4.5
36dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 4.5

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  379 bits (191), Expect = e-102
 Identities = 266/291 (91%)
 Strand = Plus / Minus

                                                                            
Query: 50       ttcaagcccgtggaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109
                ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 36859531 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 36859472

                                                                            
Query: 110      ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169
                ||||||||||||||| || ||||    | ||||||||| ||||||||||| || ||||| 
Sbjct: 36859471 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 36859412

                                                                            
Query: 170      gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229
                |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||
Sbjct: 36859411 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 36859352

                                                                            
Query: 230      acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289
                |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 36859351 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 36859292

                                                                   
Query: 290      gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaag 340
                |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 36859291 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaag 36859241



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>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1096A10
          Length = 150976

 Score =  379 bits (191), Expect = e-102
 Identities = 266/291 (91%)
 Strand = Plus / Minus

                                                                         
Query: 50    ttcaagcccgtggaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109
             ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 75109 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 75050

                                                                         
Query: 110   ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169
             ||||||||||||||| || ||||    | ||||||||| ||||||||||| || ||||| 
Sbjct: 75049 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 74990

                                                                         
Query: 170   gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229
             |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||
Sbjct: 74989 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 74930

                                                                         
Query: 230   acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289
             |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 74929 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 74870

                                                                
Query: 290   gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaag 340
             |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 74869 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaag 74819



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>dbj|AK105944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C03, full
           insert sequence
          Length = 1715

 Score =  379 bits (191), Expect = e-102
 Identities = 266/291 (91%)
 Strand = Plus / Plus

                                                                       
Query: 50  ttcaagcccgtggaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109
           ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 104 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 163

                                                                       
Query: 110 ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169
           ||||||||||||||| || ||||    | ||||||||| ||||||||||| || ||||| 
Sbjct: 164 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 223

                                                                       
Query: 170 gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229
           |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||
Sbjct: 224 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 283

                                                                       
Query: 230 acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 284 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 343

                                                              
Query: 290 gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaag 340
           |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 344 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaag 394



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>dbj|AK070880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I03, full
            insert sequence
          Length = 3618

 Score =  379 bits (191), Expect = e-102
 Identities = 266/291 (91%)
 Strand = Plus / Plus

                                                                        
Query: 50   ttcaagcccgtggaggattgcagctccgaggggaggtcggagcagacggtggccgccgac 109
            ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1970 ttcaagcccgtggaggagtgcagctcggatgggaggtcggagcagacggtggccgccgac 2029

                                                                        
Query: 110  ttcgacggcacgctgctccggtcctccaacgccttcccctactacctcctggtggcgctg 169
            ||||||||||||||| || ||||    | ||||||||| ||||||||||| || ||||| 
Sbjct: 2030 ttcgacggcacgctggtcaggtcgcggagcgccttcccgtactacctcctcgtcgcgctc 2089

                                                                        
Query: 170  gaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgccgttcgtgtacgtg 229
            |||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||
Sbjct: 2090 gaggccggcagcgtgctccgcgccgtcgtgctgctgctgtccgtgccgttcgtctacgtg 2149

                                                                        
Query: 230  acctacatcttcttctccgagtcgctggccatcagcaccctggtgtacatctccgtggcc 289
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 2150 acctacattttcttctccgagtcgctggccatcagcacgctggtgtacatctccgtggcg 2209

                                                               
Query: 290  gggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgcccaag 340
            |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 2210 gggctcaaggtgaggaacatcgagatggtggcgcggtcggtgctgcccaag 2260



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>gb|AY105347.1| Zea mays PCO089398 mRNA sequence
          Length = 2225

 Score =  299 bits (151), Expect = 3e-78
 Identities = 265/303 (87%)
 Strand = Plus / Plus

                                                                       
Query: 36  tggcgtctctgaaattcaagcccgtggaggattgcagctccgaggggaggtcggagcaga 95
           |||||||||  | |||||||||| | ||||| ||| |||| |||||| ||||||||||||
Sbjct: 354 tggcgtctcccagattcaagcccatcgaggagtgctgctcggaggggcggtcggagcaga 413

                                                                       
Query: 96  cggtggccgccgacttcgacggcacgctgctccggtcctccaacgccttcccctactacc 155
           |||||||||||||| | |||||||||||||||   |||   | ||| |||||||||||||
Sbjct: 414 cggtggccgccgacctggacggcacgctgctcatctccaggagcgcgttcccctactacc 473

                                                                       
Query: 156 tcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctgctcctgtcggtgc 215
           |||| ||||| || ||||||||||||||||||||||||| |  |||||||||||| ||||
Sbjct: 474 tcctcgtggctctcgaggccggcagcgtcctccgcgccgcgctgctgctcctgtccgtgc 533

                                                                       
Query: 216 cgttcgtgtacgtgacctacatcttcttctccgagtcgctggccatcagcaccctggtgt 275
           ||||||| ||||| ||||||  |||||||||||||||||||||||||||||| |||||||
Sbjct: 534 cgttcgtctacgtcacctacgccttcttctccgagtcgctggccatcagcacgctggtgt 593

                                                                       
Query: 276 acatctccgtggccgggctcaaggtgaggagcatcgagatggcggcgcggtcggtgctgc 335
           ||||||||||||| |||||||||||| | ||||||||||||| |||||| || ||||| |
Sbjct: 594 acatctccgtggcggggctcaaggtgcgcagcatcgagatggtggcgcgctccgtgctcc 653

              
Query: 336 cca 338
           |||
Sbjct: 654 cca 656



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>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21,
              complete sequence
          Length = 135750

 Score =  155 bits (78), Expect = 1e-34
 Identities = 216/262 (82%)
 Strand = Plus / Plus

                                                                          
Query: 77     gaggggaggtcggagcagacggtggccgccgacttcgacggcacgctgctccggtcctcc 136
              |||||| ||||| |||||||||||||| ||||| |||||||||||||||||| ||||  |
Sbjct: 112572 gaggggcggtcgcagcagacggtggcctccgacctcgacggcacgctgctcctgtcccgc 112631

                                                                          
Query: 137    aacgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtg 196
              | ||||||||| ||||||||||| || ||||| ||||||||| ||  ||||||||| || 
Sbjct: 112632 agcgccttcccgtactacctcctcgtcgcgctcgaggccggcggccccctccgcgcggtc 112691

                                                                          
Query: 197    gcgctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctg 256
              ||||||||| |||| ||||| ||||| ||| | || ||| ||  | |||||||||| || 
Sbjct: 112692 gcgctgctcatgtccgtgcccttcgtctacctcacgtacgtcaccatctccgagtccctc 112751

                                                                          
Query: 257    gccatcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatg 316
              ||| |  || | ||| |||||||| ||||||| || ||| ||||||||  | |||||  |
Sbjct: 112752 gccgtgcgcgcgctgctgtacatcgccgtggcgggtctcgaggtgagggacgtcgagtcg 112811

                                    
Query: 317    gcggcgcggtcggtgctgccca 338
              | ||||||||||||||||||||
Sbjct: 112812 gtggcgcggtcggtgctgccca 112833



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  155 bits (78), Expect = 1e-34
 Identities = 216/262 (82%)
 Strand = Plus / Plus

                                                                            
Query: 77       gaggggaggtcggagcagacggtggccgccgacttcgacggcacgctgctccggtcctcc 136
                |||||| ||||| |||||||||||||| ||||| |||||||||||||||||| ||||  |
Sbjct: 21860163 gaggggcggtcgcagcagacggtggcctccgacctcgacggcacgctgctcctgtcccgc 21860222

                                                                            
Query: 137      aacgccttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtg 196
                | ||||||||| ||||||||||| || ||||| ||||||||| ||  ||||||||| || 
Sbjct: 21860223 agcgccttcccgtactacctcctcgtcgcgctcgaggccggcggccccctccgcgcggtc 21860282

                                                                            
Query: 197      gcgctgctcctgtcggtgccgttcgtgtacgtgacctacatcttcttctccgagtcgctg 256
                ||||||||| |||| ||||| ||||| ||| | || ||| ||  | |||||||||| || 
Sbjct: 21860283 gcgctgctcatgtccgtgcccttcgtctacctcacgtacgtcaccatctccgagtccctc 21860342

                                                                            
Query: 257      gccatcagcaccctggtgtacatctccgtggccgggctcaaggtgaggagcatcgagatg 316
                ||| |  || | ||| |||||||| ||||||| || ||| ||||||||  | |||||  |
Sbjct: 21860343 gccgtgcgcgcgctgctgtacatcgccgtggcgggtctcgaggtgagggacgtcgagtcg 21860402

                                      
Query: 317      gcggcgcggtcggtgctgccca 338
                | ||||||||||||||||||||
Sbjct: 21860403 gtggcgcggtcggtgctgccca 21860424



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>ref|XM_463861.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1521

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 143 ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202
           ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 130 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 189

             
Query: 203 ct 204
           ||
Sbjct: 190 ct 191



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                          
Query: 143    ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202
              ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 778139 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 778080

                
Query: 203    ct 204
              ||
Sbjct: 778079 ct 778078



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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 143   ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202
             ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 56270 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 56211

               
Query: 203   ct 204
             ||
Sbjct: 56210 ct 56209



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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                          
Query: 143    ttcccctactacctcctggtggcgctggaggccggcagcgtcctccgcgccgtggcgctg 202
              ||||| |||||| |||| ||||| || ||||||||||||  |||||||||  ||||||||
Sbjct: 135034 ttcccgtactacttccttgtggctctcgaggccggcagctacctccgcgcgctggcgctg 134975

                
Query: 203    ct 204
              ||
Sbjct: 134974 ct 134973



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 105     ccgacttcgacggcacgctgctccg 129
               ||||| |||||||||||||||||||
Sbjct: 3584297 ccgacctcgacggcacgctgctccg 3584273



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 103      cgccgacttcgacggcacgctgct 126
                ||||||| ||||||||||||||||
Sbjct: 29861312 cgccgacctcgacggcacgctgct 29861289



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 157    cctggtggcgctggaggccggcagc 181
              ||||||||||||||||| |||||||
Sbjct: 245083 cctggtggcgctggagggcggcagc 245059



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 254     ctggccatcagcaccctggtg 274
               |||||||||||||||||||||
Sbjct: 4451238 ctggccatcagcaccctggtg 4451218



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 105     ccgacttcgacggcacgctgctccg 129
               ||||| |||||||||||||||||||
Sbjct: 3584408 ccgacctcgacggcacgctgctccg 3584384



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 103      cgccgacttcgacggcacgctgct 126
                ||||||| ||||||||||||||||
Sbjct: 29952734 cgccgacctcgacggcacgctgct 29952711



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>emb|BX817236.1|CNS0ABN7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH94ZF05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1340

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 ctcctggtggcgctggaggcc 175
           |||||||||||||||||||||
Sbjct: 772 ctcctggtggcgctggaggcc 792



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>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19,
              complete sequence
          Length = 150620

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 105    ccgacttcgacggcacgctgctccg 129
              ||||| |||||||||||||||||||
Sbjct: 101950 ccgacctcgacggcacgctgctccg 101926



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     cggtggccgccgacttcgacg 116
              |||||||||||||||||||||
Sbjct: 529446 cggtggccgccgacttcgacg 529466



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>ref|XM_475002.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1242

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  agaggcaatggcgtctctga 47
           ||||||||||||||||||||
Sbjct: 597 agaggcaatggcgtctctga 578



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>ref|NM_197089.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0029C15.14), mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cggtgccgttcgtgtacgtg 229
           ||||||||||||||||||||
Sbjct: 301 cggtgccgttcgtgtacgtg 282



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>gb|AY743675.1| Bos taurus alpha-1 type II collagen (COL2A1) gene, complete sequence
          Length = 30941

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   gctggccatcagcaccctgg 272
             ||||||||||||||||||||
Sbjct: 23233 gctggccatcagcaccctgg 23214



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     tggccgccgacttcgacggc 118
              ||||||||||||||||||||
Sbjct: 580615 tggccgccgacttcgacggc 580634



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gagcatcgagatggcggcgc 323
              ||||||||||||||||||||
Sbjct: 451615 gagcatcgagatggcggcgc 451634



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>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
              sequence
          Length = 159661

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    cgccgacttcgacggcacgctgct 126
              ||||||| ||||||||||||||||
Sbjct: 149293 cgccgacctcgacggcacgctgct 149316



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>emb|AJ697714.1| Pseudomonas aeruginosa partial aph gene for acid phosphatase,
           allele 6
          Length = 348

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  gacggtggccgccgacttcg 113
           ||||||||||||||||||||
Sbjct: 308 gacggtggccgccgacttcg 327



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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
             sequence
          Length = 148816

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   cggtgccgttcgtgtacgtg 229
             ||||||||||||||||||||
Sbjct: 20752 cggtgccgttcgtgtacgtg 20733



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>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
             sequence
          Length = 139946

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   cgccgacttcgacggcacgctgct 126
             ||||||| ||||||||||||||||
Sbjct: 27253 cgccgacctcgacggcacgctgct 27230



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      gtggccgccgacttcgacgg 117
               ||||||||||||||||||||
Sbjct: 2877571 gtggccgccgacttcgacgg 2877590



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cggtgccgttcgtgtacgtg 229
                ||||||||||||||||||||
Sbjct: 17911289 cggtgccgttcgtgtacgtg 17911308



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>gb|AC074046.9|AC074046 Mus musculus 5 BAC RP23-440C1 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 182534

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    attgcagctccgaggggagg 85
             ||||||||||||||||||||
Sbjct: 18579 attgcagctccgaggggagg 18598



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>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  ctccgtggccgggctcaagg 299
            ||||||||||||||||||||
Sbjct: 8520 ctccgtggccgggctcaagg 8501



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>gb|DQ180314.1| Fragaria x ananassa clone PBCESTFXA9 SSR marker
          Length = 883

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 92  cagacggtggccgccgacttcgacggcacgct 123
           ||||||||||| || ||| |||||||||||||
Sbjct: 174 cagacggtggctgcagacctcgacggcacgct 205



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>gb|U22894.1|SLU22894 Streptomyces lividans amplifiable element AUD1
          Length = 20996

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 194 gtggcgctgctcctgtcggtgccg 217
           ||||||||||||||| ||||||||
Sbjct: 883 gtggcgctgctcctgccggtgccg 906



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cggtgccgttcgtgtacgtg 229
                ||||||||||||||||||||
Sbjct: 17920542 cggtgccgttcgtgtacgtg 17920561



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    ctccgtggccgggctcaagg 299
              ||||||||||||||||||||
Sbjct: 222908 ctccgtggccgggctcaagg 222889



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 163     ggcgctggaggccggcagcg 182
               ||||||||||||||||||||
Sbjct: 2542534 ggcgctggaggccggcagcg 2542515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,311,124
Number of Sequences: 3902068
Number of extensions: 2311124
Number of successful extensions: 45341
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44446
Number of HSP's gapped (non-prelim): 889
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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