ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast08d06 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 110 bits (275), Expect = 1e-24 Identities = 61/97 (62%), Positives = 61/97 (62%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 309 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLRQGVVVIT ETGKWHVVMA Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMA 105
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 109 bits (272), Expect = 3e-24 Identities = 60/97 (61%), Positives = 60/97 (61%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 309 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLRQGVVVIT ETGKWHVVMA Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMA 105
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 45.1 bits (105), Expect = 7e-05 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 12/108 (11%) Frame = +1 Query: 133 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 276 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 277 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLR+G VVIT ETGKWHV+MA Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMA 117
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 41.6 bits (96), Expect = 8e-04 Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 12/109 (11%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 273 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 274 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLR+G VVIT E+GKWHV+MA Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMA 117
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLR+G V+IT ETGKWHV+MA Sbjct: 80 KKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMA 116
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLR+G VV+T ETGKWHV+MA Sbjct: 87 KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMA 123
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 37.7 bits (86), Expect = 0.011 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKTLR+G VV+T ETGKW+V+MA Sbjct: 83 KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMA 119
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 37.7 bits (86), Expect = 0.011 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Frame = +1 Query: 166 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 342 A +K A LG+ +K +S+A+R Q KKT+R G +I Sbjct: 33 ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87 Query: 343 TXXXXXXXXXXXXXXXETGKWHVVMA 420 T E+GKWHV+MA Sbjct: 88 TGASSGLGLATAKALAESGKWHVIMA 113
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 36.6 bits (83), Expect = 0.025 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +1 Query: 310 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 KKT R+G VIT +TGKWHV+MA Sbjct: 84 KKTERKGTAVITGASSGLGLATAKALADTGKWHVIMA 120
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 32.0 bits (71), Expect = 0.61 Identities = 15/30 (50%), Positives = 15/30 (50%) Frame = +1 Query: 331 VVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 VVVIT ETGKWHVVMA Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMA 30
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.61 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -3 Query: 188 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 39 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 329 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 30.8 bits (68), Expect = 1.4 Identities = 23/90 (25%), Positives = 33/90 (36%) Frame = +1 Query: 151 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 330 G MG VA K A L VS+ A ++++ KKT + Sbjct: 92 GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146 Query: 331 VVVITXXXXXXXXXXXXXXXETGKWHVVMA 420 +IT +TG+WHV+MA Sbjct: 147 TCIITGASSGLGLATAKALADTGEWHVIMA 176
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 296 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 159 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 317 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 6.7 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -3 Query: 275 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 96 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 95 ELGLSLASTALQEFNELELECTVLLY 18 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144
>ALGE_PSEAE (P18895) Alginate production protein algE precursor| Length = 490 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -3 Query: 116 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGL 3 WR DD ++G S + ALQ + EL+ V YF GL Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL 442
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.124 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,140,060 Number of Sequences: 219361 Number of extensions: 316987 Number of successful extensions: 920 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 915 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 919 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
