>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGATELRVVGG*PQPA 152
           A G PGPRG    +P P G AGAT  R + G P PA
Sbjct: 320 APGLPGPRG----IPGPVGAAGATGARGIVGEPGPA 351

>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGATELRVVGG*PQPA 152
           A G PGPRG    +P P G AGAT  R + G P PA
Sbjct: 326 APGLPGPRG----IPGPAGAAGATGARGLVGEPGPA 357

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGATELRVVGG*PQPA 152
           A G PGPRG    +P P G AGAT  R + G P PA
Sbjct: 320 APGLPGPRG----IPGPVGAAGATGARGLVGEPGPA 351

>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGATELRVVGG*PQPA 152
           A G PGPRG    +P P G AGAT  R + G P PA
Sbjct: 318 APGLPGPRG----IPGPVGAAGATGARGLVGEPGPA 349

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGATELRVVGG*PQPA 152
           A G PGPRG    +P P G AGAT  R + G P PA
Sbjct: 326 APGLPGPRG----IPGPVGAAGATGPRGLVGEPGPA 357

>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGATELRVVGG*PQPA 152
           A G PGPRG     P P G  G+T  R +GG P P+
Sbjct: 314 APGFPGPRGG----PGPQGPQGSTGARGLGGDPGPS 345

>TIM16_XENTR (Q5XGJ0) Mitochondrial import inner membrane translocase subunit|
           TIM16
          Length = 125

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -1

Query: 165 SLSQRLKQMLAASDAAGPARNAAKTTSAASFSLVAIFLSQ 46
           + ++ L+Q  AAS AA  AR  A T SAA  SL  I L +
Sbjct: 19  AFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQE 58

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPN-GWAGATELRVVGG*PQP 155
           AGG P P+  R   PRP  G AG       GG P+P
Sbjct: 206 AGGPPRPQAPRPQAPRPGPGTAGGRPGSSAGGPPRP 241

>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = -3

Query: 259 AGGEPGPRGSRYPLPRPNGWAGA 191
           AGG PGPRG   P P P G  GA
Sbjct: 532 AGGPPGPRGGAGP-PGPEGGKGA 553

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 142 LLQPLAEATHLQPAALSLQPNRSDAAEGTCSLGVRAHLRLLQ 267
           LL+P  EAT LQP     QP R+  A+    +    H+  L+
Sbjct: 342 LLKPREEATVLQPPVSRQQPRRTAQAKAGNLMSAMLHVEALE 383

>TI16A_XENLA (Q6NTU3) Mitochondrial import inner membrane translocase subunit|
           TIM16-A
          Length = 125

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 165 SLSQRLKQMLAASDAAGPARNAAKTTSAASFSLVAIFLSQ 46
           + ++ L+Q  AAS  A  AR  A T SAA  SL  I L +
Sbjct: 19  AFTRALRQEFAASKVAAEARGRAGTESAAVSSLSGISLQE 58

>ISPE_STRAW (Q820G3) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 297

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 157 AEATHLQPAALSLQPNRSDAAEGTCSLGVRAHL 255
           A +  LQPAALSL P+ SD  E   + G  A L
Sbjct: 218 AVSNDLQPAALSLFPSLSDTLEAGRAAGALAAL 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,368,496
Number of Sequences: 219361
Number of extensions: 442078
Number of successful extensions: 1693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)