ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast08b01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475700.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 687 Score = 105 bits (53), Expect = 1e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 161 tgctcttgctcgccatgttcgccggctcagatgcgatgtactgcgtgtgcaagtcggacg 220 |||||||||| ||||||| | | |||||||||| | || ||||||||||||| | ||| Sbjct: 23 tgctcttgctggccatgtccacaggctcagatggggcgttctgcgtgtgcaagcccgacc 82 Query: 221 cgaacccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 || ||||| ||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 83 agagcccggcggcgatgcagaaggccatcgactacgcgtgctggcgcggcgccgactgca 142 Query: 281 cccagatca 289 ||||||||| Sbjct: 143 cccagatca 151 Score = 63.9 bits (32), Expect = 4e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 323 tcgtcgcccactgctcctacgcctgncacagctactaccagaagaacgccggcatgggcg 382 ||||||| ||||||||||||||| || ||||| |||||||||| | ||| |||| Sbjct: 185 tcgtcgcgcactgctcctacgccaccaactcctacttccagaagaacagccccatcggcg 244 Query: 383 ccacctgcgacttcatgggcgtcgccaccctcacc 417 |||||||||||||| |||||||||||||||||| Sbjct: 245 ccacctgcgacttcggcggcgtcgccaccctcacc 279
>dbj|AK101753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063E20, full insert sequence Length = 1020 Score = 105 bits (53), Expect = 1e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 161 tgctcttgctcgccatgttcgccggctcagatgcgatgtactgcgtgtgcaagtcggacg 220 |||||||||| ||||||| | | |||||||||| | || ||||||||||||| | ||| Sbjct: 144 tgctcttgctggccatgtccacaggctcagatggggcgttctgcgtgtgcaagcccgacc 203 Query: 221 cgaacccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 || ||||| ||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 204 agagcccggcggcgatgcagaaggccatcgactacgcgtgctggcgcggcgccgactgca 263 Query: 281 cccagatca 289 ||||||||| Sbjct: 264 cccagatca 272 Score = 63.9 bits (32), Expect = 4e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 323 tcgtcgcccactgctcctacgcctgncacagctactaccagaagaacgccggcatgggcg 382 ||||||| ||||||||||||||| || ||||| |||||||||| | ||| |||| Sbjct: 306 tcgtcgcgcactgctcctacgccaccaactcctacttccagaagaacagccccatcggcg 365 Query: 383 ccacctgcgacttcatgggcgtcgccaccctcacc 417 |||||||||||||| |||||||||||||||||| Sbjct: 366 ccacctgcgacttcggcggcgtcgccaccctcacc 400
>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07, complete sequence Length = 146712 Score = 89.7 bits (45), Expect = 7e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 201 ctgcgtgtgcaagtcggacgcgaacccggtggcgatgcagaaggccatcgactacgcgtg 260 ||||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct: 62527 ctgcgtgtgcaagcccgaccagagcccggcggcgatgcagaaggccatcgactacgcgtg 62586 Query: 261 cggcaagggcgccgactgcacccagatca 289 | | |||||||||||||||||||||| Sbjct: 62587 ctggcgcggcgccgactgcacccagatca 62615 Score = 63.9 bits (32), Expect = 4e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 323 tcgtcgcccactgctcctacgcctgncacagctactaccagaagaacgccggcatgggcg 382 ||||||| ||||||||||||||| || ||||| |||||||||| | ||| |||| Sbjct: 62649 tcgtcgcgcactgctcctacgccaccaactcctacttccagaagaacagccccatcggcg 62708 Query: 383 ccacctgcgacttcatgggcgtcgccaccctcacc 417 |||||||||||||| |||||||||||||||||| Sbjct: 62709 ccacctgcgacttcggcggcgtcgccaccctcacc 62743
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 89.7 bits (45), Expect = 7e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 201 ctgcgtgtgcaagtcggacgcgaacccggtggcgatgcagaaggccatcgactacgcgtg 260 ||||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct: 142341 ctgcgtgtgcaagcccgaccagagcccggcggcgatgcagaaggccatcgactacgcgtg 142400 Query: 261 cggcaagggcgccgactgcacccagatca 289 | | |||||||||||||||||||||| Sbjct: 142401 ctggcgcggcgccgactgcacccagatca 142429 Score = 63.9 bits (32), Expect = 4e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 323 tcgtcgcccactgctcctacgcctgncacagctactaccagaagaacgccggcatgggcg 382 ||||||| ||||||||||||||| || ||||| |||||||||| | ||| |||| Sbjct: 142463 tcgtcgcgcactgctcctacgccaccaactcctacttccagaagaacagccccatcggcg 142522 Query: 383 ccacctgcgacttcatgggcgtcgccaccctcacc 417 |||||||||||||| |||||||||||||||||| Sbjct: 142523 ccacctgcgacttcggcggcgtcgccaccctcacc 142557
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 89.7 bits (45), Expect = 7e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 201 ctgcgtgtgcaagtcggacgcgaacccggtggcgatgcagaaggccatcgactacgcgtg 260 ||||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||| Sbjct: 25199686 ctgcgtgtgcaagcccgaccagagcccggcggcgatgcagaaggccatcgactacgcgtg 25199745 Query: 261 cggcaagggcgccgactgcacccagatca 289 | | |||||||||||||||||||||| Sbjct: 25199746 ctggcgcggcgccgactgcacccagatca 25199774 Score = 63.9 bits (32), Expect = 4e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 323 tcgtcgcccactgctcctacgcctgncacagctactaccagaagaacgccggcatgggcg 382 ||||||| ||||||||||||||| || ||||| |||||||||| | ||| |||| Sbjct: 25199808 tcgtcgcgcactgctcctacgccaccaactcctacttccagaagaacagccccatcggcg 25199867 Query: 383 ccacctgcgacttcatgggcgtcgccaccctcacc 417 |||||||||||||| |||||||||||||||||| Sbjct: 25199868 ccacctgcgacttcggcggcgtcgccaccctcacc 25199902 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 acagctactaccagaagaac 369 |||||||||||||||||||| Sbjct: 28731501 acagctactaccagaagaac 28731482
>gb|AY110150.1| Zea mays CL16078_1 mRNA sequence Length = 1241 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 372 cggcatgggcgccacctgcgacttcatgggcgtcgccaccctcaccggc 420 |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 306 cggcatgggcgccacctgcgacttcaacggcgtcgccaccctcaccggc 354
>gb|BT017886.1| Zea mays clone EL01N0514G06.c mRNA sequence Length = 1129 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 378 gggcgccacctgcgacttcatgggcgtcgccaccctcaccggc 420 |||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 376 gggcgccacctgcgacttcaacggcgtcgccacgctcaccggc 418 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgc 279 |||||||||| ||| ||||||||||| |||| |||||| ||||||||| Sbjct: 229 ggcgatgcaggcggcgatcgactacgcctgcgccaagggggccgactgc 277
>ref|XM_479043.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 93 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 142 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 212 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 271 Query: 410 ccctcacc 417 |||||||| Sbjct: 272 ccctcacc 279
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 24452724 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 24452773 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 24452843 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 24452902 Query: 410 ccctcacc 417 |||||||| Sbjct: 24452903 ccctcacc 24452910
>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ2013_G04 Length = 73667 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 2534 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 2583 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 2653 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 2712 Query: 410 ccctcacc 417 |||||||| Sbjct: 2713 ccctcacc 2720
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 78591 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 78640 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 78710 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 78769 Query: 410 ccctcacc 417 |||||||| Sbjct: 78770 ccctcacc 78777
>dbj|AK112017.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A05, full insert sequence Length = 1116 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 204 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 253 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 323 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 382 Query: 410 ccctcacc 417 |||||||| Sbjct: 383 ccctcacc 390
>dbj|AK111970.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C09, full insert sequence Length = 1182 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 269 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 318 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 388 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 447 Query: 410 ccctcacc 417 |||||||| Sbjct: 448 ccctcacc 455
>dbj|AK111913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126J18, full insert sequence Length = 1119 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 231 ggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||| |||||||| |||||||||||||||||||| |||||| ||||||| Sbjct: 210 ggcgctgcagaagaccatcgactacgcgtgcggcgcgggcgcggactgca 259 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttcatgggcgtcgcca 409 ||||||||| ||||| |||| | ||||||||||||||||||||||| ||| ||||| Sbjct: 329 acagctacttccagaggaacagggccatgggcgccacctgcgacttcaccggcaccgcca 388 Query: 410 ccctcacc 417 |||||||| Sbjct: 389 ccctcacc 396
>gb|AC009475.5| Homo sapiens BAC clone RP11-285F23 from 2, complete sequence Length = 190349 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 2 actgcacaccaccaccccactccactctctc 32 ||||||| ||||||||||||||||||||||| Sbjct: 188331 actgcaccccaccaccccactccactctctc 188361
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Plus Query: 226 ccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgcacccag 285 |||| ||||||||||||||| || ||||||||||| | ||||||||||||||||| Sbjct: 3468411 ccggcggcgatgcagaaggcaattgactacgcgtgttggcgcagcgccgactgcacccag 3468470 Query: 286 atca 289 |||| Sbjct: 3468471 atca 3468474
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 48.1 bits (24), Expect = 0.024 Identities = 54/64 (84%) Strand = Plus / Plus Query: 226 ccggtggcgatgcagaaggccatcgactacgcgtgcggcaagggcgccgactgcacccag 285 |||| ||||||||||||||| || ||||||||||| | ||||||||||||||||| Sbjct: 85115 ccggcggcgatgcagaaggcaattgactacgcgtgttggcgcagcgccgactgcacccag 85174 Query: 286 atca 289 |||| Sbjct: 85175 atca 85178
>gb|AY109031.1| Zea mays PCO112628 mRNA sequence Length = 676 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacgccggcatgggcgccacctgcgacttca 397 |||||||||||||||| ||| | || |||||||||||||||||||| Sbjct: 489 acagctactaccagaacaacaaggccaagggcgccacctgcgacttca 536
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 362 agaagaacgccggcatgggcgcc 384 ||||||||||||||||||||||| Sbjct: 240197 agaagaacgccggcatgggcgcc 240219
>ref|XM_469816.1| Oryza sativa (japonica cultivar-group), mRNA Length = 754 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 250 gactacgcgtgcggcaagggcgccgactgca 280 ||||||||||||||| | ||||||||||||| Sbjct: 127 gactacgcgtgcggcgacggcgccgactgca 157
>ref|NM_192939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 46.1 bits (23), Expect = 0.094 Identities = 31/34 (91%) Strand = Plus / Plus Query: 336 ctcctacgcctgncacagctactaccagaagaac 369 ||||||||||| |||||||||||||||||||| Sbjct: 411 ctcctacgccttcaacagctactaccagaagaac 444
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 gactacgcgtgcggcaagggcgccgactgca 280 ||||||||||||||| | ||||||||||||| Sbjct: 30914600 gactacgcgtgcggcgacggcgccgactgca 30914570 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 379 ggcgccacctgcgacttcatgggcgtcgccaccctc 414 |||||||||||||||||| |||| |||||||||| Sbjct: 17383747 ggcgccacctgcgacttcggcggcgccgccaccctc 17383712
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 250 gactacgcgtgcggcaagggcgccgactgca 280 ||||||||||||||| | ||||||||||||| Sbjct: 28490 gactacgcgtgcggcgacggcgccgactgca 28520
>gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, complete sequence Length = 216320 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 147 tcctctggtcctcatgctcttgc 169 ||||||||||||||||||||||| Sbjct: 49892 tcctctggtcctcatgctcttgc 49914
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 250 gactacgcgtgcggcaagggcgccgactgca 280 ||||||||||||||| | ||||||||||||| Sbjct: 31005123 gactacgcgtgcggcgacggcgccgactgca 31005093 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 379 ggcgccacctgcgacttcatgggcgtcgccaccctc 414 |||||||||||||||||| |||| |||||||||| Sbjct: 17377288 ggcgccacctgcgacttcggcggcgccgccaccctc 17377253
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.094 Identities = 31/34 (91%) Strand = Plus / Plus Query: 336 ctcctacgcctgncacagctactaccagaagaac 369 ||||||||||| |||||||||||||||||||| Sbjct: 25268622 ctcctacgccttcaacagctactaccagaagaac 25268655 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 378 gggcgccacctgcgacttcatgggcgtcgccaccctc 414 ||||||||||||||||||| |||| |||||||||| Sbjct: 32139908 gggcgccacctgcgacttcggcggcgccgccaccctc 32139872
>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete sequence Length = 245536 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 147 tcctctggtcctcatgctcttgc 169 ||||||||||||||||||||||| Sbjct: 81103 tcctctggtcctcatgctcttgc 81081
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158C05 Length = 145514 Score = 46.1 bits (23), Expect = 0.094 Identities = 31/34 (91%) Strand = Plus / Plus Query: 336 ctcctacgcctgncacagctactaccagaagaac 369 ||||||||||| |||||||||||||||||||| Sbjct: 65666 ctcctacgccttcaacagctactaccagaagaac 65699
>dbj|AK103836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G11, full insert sequence Length = 820 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 250 gactacgcgtgcggcaagggcgccgactgca 280 ||||||||||||||| | ||||||||||||| Sbjct: 211 gactacgcgtgcggcgacggcgccgactgca 241
>dbj|AK063308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F12, full insert sequence Length = 1275 Score = 46.1 bits (23), Expect = 0.094 Identities = 31/34 (91%) Strand = Plus / Plus Query: 336 ctcctacgcctgncacagctactaccagaagaac 369 ||||||||||| |||||||||||||||||||| Sbjct: 484 ctcctacgccttcaacagctactaccagaagaac 517
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 cgagagaagagctcgagctcca 121 |||||||||||||||||||||| Sbjct: 12191283 cgagagaagagctcgagctcca 12191262
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 cgagagaagagctcgagctcca 121 |||||||||||||||||||||| Sbjct: 102742 cgagagaagagctcgagctcca 102721
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 cgagagaagagctcgagctcca 121 |||||||||||||||||||||| Sbjct: 125662 cgagagaagagctcgagctcca 125641
>ref|XM_464085.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1850 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 1423 acagctactaccagaagaacg 1443
>ref|XM_506715.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0026E05.37 mRNA Length = 2462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 1933 acagctactaccagaagaacg 1953
>ref|NM_191356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 510 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 gggcgccacctgcgacttcatgggcgtcgccaccctc 414 ||||||||||||||||||| |||| |||||||||| Sbjct: 252 gggcgccacctgcgacttcggcggcgccgccaccctc 288
>gb|BT017188.1| Zea mays clone EL01N0370G02.c mRNA sequence Length = 679 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 236 tgcagaaggccatcgactacgcgtgcggcaagggcgccgactgca 280 |||||||||| | ||||||||||||||| ||||||||||||| Sbjct: 132 tgcagaaggcactggactacgcgtgcggcgccggcgccgactgca 176
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence Length = 216902 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 8 caccaccaccccactccactctctcccac 36 ||||||||||||||||||| ||| ||||| Sbjct: 176939 caccaccaccccactccaccctcccccac 176911
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 gggcgtcgccaccctcaccgg 419 ||||||||||||||||||||| Sbjct: 103375 gggcgtcgccaccctcaccgg 103355
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cgtcgccaccctcaccggcgc 422 ||||||||||||||||||||| Sbjct: 136774 cgtcgccaccctcaccggcgc 136754
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 2100288 acagctactaccagaagaacg 2100308
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 378 gggcgccacctgcgacttcatgggcgtcgccaccctc 414 ||||||||||||||||||| |||| |||||||||| Sbjct: 10661 gggcgccacctgcgacttcggcggcgccgccaccctc 10625
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cgtcgccaccctcaccggcgc 422 ||||||||||||||||||||| Sbjct: 1844514 cgtcgccaccctcaccggcgc 1844494
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 150496 acagctactaccagaagaacg 150516
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 14981 acagctactaccagaagaacg 15001
>dbj|AK108127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D06, full insert sequence Length = 954 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 378 gggcgccacctgcgacttcatgggcgtcgccaccctc 414 ||||||||||||||||||| |||| |||||||||| Sbjct: 357 gggcgccacctgcgacttcggcggcgccgccaccctc 393
>dbj|AK101322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034E16, full insert sequence Length = 2462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 1933 acagctactaccagaagaacg 1953
>dbj|AK072088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O04, full insert sequence Length = 1849 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaacg 370 ||||||||||||||||||||| Sbjct: 1422 acagctactaccagaagaacg 1442
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cgtcgccaccctcaccggcgc 422 ||||||||||||||||||||| Sbjct: 135206 cgtcgccaccctcaccggcgc 135186
>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library) contains Bmx gene, complete sequence Length = 159446 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 tcctctggtcctcatgctctt 167 ||||||||||||||||||||| Sbjct: 118659 tcctctggtcctcatgctctt 118679
>gb|AC121498.12| Mus musculus chromosome 1, clone RP23-38P22, complete sequence Length = 152264 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ctccctccccctctttgcttgcca 74 |||||||||||| ||||||||||| Sbjct: 26374 ctccctccccctttttgcttgcca 26351
>ref|XM_475945.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 846 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaac 369 |||||||||||||||||||| Sbjct: 479 acagctactaccagaagaac 498
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 379 ggcgccacctgcgacttcatgggcgtcgccaccctc 414 |||||||||||||||||| |||| |||||||||| Sbjct: 106124 ggcgccacctgcgacttcggcggcgccgccaccctc 106089
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 396 catgggcgtcgccaccctcaccgg 419 |||| ||||||||||||||||||| Sbjct: 128589 catgtgcgtcgccaccctcaccgg 128566
>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11, complete sequence Length = 112796 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 acagctactaccagaagaac 369 |||||||||||||||||||| Sbjct: 50214 acagctactaccagaagaac 50195
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 ggtggcgatgcagaaggccatcga 251 |||||||||||||||| ||||||| Sbjct: 3846413 ggtggcgatgcagaagtccatcga 3846390
>emb|AL049794.16|HSDJ777L9 Human DNA sequence from clone RP4-777L9 on chromosome 20 Contains the 5' end of the C20orf23 gene for a novel protein similar to KIF1 type and other kinesin-like proteins, the RPLP0P1 gene for ribosomal protein large P0 pseudogene 1 and a CpG island, complete sequence Length = 119696 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 ccactccactctctcccacgccac 41 ||||||||||||||||||| |||| Sbjct: 78560 ccactccactctctcccactccac 78583
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 cgtcgccaccctcaccggcg 421 |||||||||||||||||||| Sbjct: 74313 cgtcgccaccctcaccggcg 74294
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacaccaccaccccactcca 25 |||||||||||||||||||| Sbjct: 67307 cacaccaccaccccactcca 67326
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172284 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacaccaccaccccactcca 25 |||||||||||||||||||| Sbjct: 58902 cacaccaccaccccactcca 58883
>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence Length = 212548 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ctctggtcctcatgctcttg 168 |||||||||||||||||||| Sbjct: 111965 ctctggtcctcatgctcttg 111946
>gb|AC078991.21| Homo sapiens Xp BAC RP11-459A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169819 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 caccccactccactctctcc 33 |||||||||||||||||||| Sbjct: 115143 caccccactccactctctcc 115162
>dbj|AK109090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A02, full insert sequence Length = 1233 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 acagctactaccagaagaac 369 |||||||||||||||||||| Sbjct: 589 acagctactaccagaagaac 608
>dbj|AK099491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026N15, full insert sequence Length = 926 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 379 ggcgccacctgcgacttcatgggcgtcgccaccctc 414 |||||||||||||||||| |||| |||||||||| Sbjct: 348 ggcgccacctgcgacttcggcggcgccgccaccctc 383
>gb|AF162938.1|AF162938 Streptomyces coelicolor A3(2) H3U (h3u) and GltB (gltB) genes, partial cds Length = 2023 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cgtcgccaccctcaccggcg 421 |||||||||||||||||||| Sbjct: 1235 cgtcgccaccctcaccggcg 1254
>gb|AE003477.3| Drosophila melanogaster chromosome 3L, section 11 of 83 of the complete sequence Length = 297894 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacaccaccaccccactcca 25 |||||||||||||||||||| Sbjct: 267967 cacaccaccaccccactcca 267948 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,934,142 Number of Sequences: 3902068 Number of extensions: 2934142 Number of successful extensions: 62111 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61266 Number of HSP's gapped (non-prelim): 834 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
