ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast08a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 ... 78 1e-14
2E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (... 76 4e-14
3E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 ... 75 5e-14
4E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 ... 75 5e-14
5EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 ... 48 9e-06
6E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 ... 44 2e-04
7E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 ... 41 0.001
8EPD1_CANMA (P56092) Protein EPD1 precursor (Essential for pseudo... 38 0.012
9GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precur... 36 0.035
10PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regula... 36 0.045
11KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 32 0.50
12FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor 31 1.1
13EPD2_CANMA (O74137) Protein EPD2 precursor (Essential for pseudo... 30 1.9
14YLM2_SCHPO (Q9P378) Hypothetical protein C19B12.02c precursor 30 1.9
15PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regula... 30 3.2
16NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor 30 3.2
17RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferas... 29 4.2
18DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Di... 29 4.2
19VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein ... 29 4.2
20ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.... 29 5.5
21KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-as... 29 5.5
22VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein ... 29 5.5
23HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1 29 5.5
24KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-as... 28 7.2
25PTFC_BACAM (P41029) Fructose permease IIC component (PTS system ... 28 7.2
26CALD1_HUMAN (Q05682) Caldesmon (CDM) 28 9.4
27REV_HV1BN (P12485) REV protein (Anti-repression transactivator p... 28 9.4
28MBD1_HUMAN (Q9UIS9) Methyl-CpG-binding domain protein 1 (Methyl-... 28 9.4

>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 501

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +3

Query: 198 YCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNAG 374
           +C+ K   +   +Q A+D+ACG G  DC+ +     C++P  VVAH +YA ++YYQK   
Sbjct: 360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGK 419

Query: 375 MGATCDFMGVATLTGADPS 431
              +CDF GVAT+T  DPS
Sbjct: 420 ASGSCDFKGVATVTTTDPS 438



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>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 461

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 36/78 (46%), Positives = 44/78 (56%)
 Frame = +3

Query: 198 YCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNAGM 377
           +CV K  AN   +Q  I+YACG   DC  I S G CF P S+ AH SY  ++YYQ N   
Sbjct: 377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHT 435

Query: 378 GATCDFMGVATLTGADPS 431
              CDF G   +T +DPS
Sbjct: 436 DLACDFKGTGIVTSSDPS 453



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>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 402

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +3

Query: 198 YCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNAG 374
           YC+     +   +Q A+D+ACG G ++C++I     C+QP +V  H S+A +SYYQK   
Sbjct: 272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGR 331

Query: 375 MGATCDFMGVATLTGADPS 431
              +CDF GVA +T  DPS
Sbjct: 332 ASGSCDFKGVAMITTTDPS 350



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>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 505

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 192 AMYCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYAXHSYYQKN 368
           +M+CV K+DA+   +   +++ACG+G A+C  I    PC+ P  V +H S+A + YYQK 
Sbjct: 360 SMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKM 419

Query: 369 AGMGATCDFMGVATLTGADPS 431
              G TCDF G A  T  DPS
Sbjct: 420 KSAGGTCDFDGTAITTTRDPS 440



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>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Anther-specific protein A6)
          Length = 478

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 195 MYCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNA 371
           ++CV    AN   +++ +  AC +    C  +     C++P+S+  H SYA +SY+ +  
Sbjct: 388 VWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFR 447

Query: 372 GMGATCDFMGVATLTGADP 428
                C F G+A  T  +P
Sbjct: 448 NQSIQCFFNGLAHETTTNP 466



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>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 484

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +3

Query: 198 YCVCKSDANPVAMQ--KAIDYACGKGADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNA 371
           +C+   +AN    Q   ++ YAC   ADCT +     C   +++  + SYA +SYYQ + 
Sbjct: 365 WCILAPNANLQDPQLGPSVSYACDH-ADCTSLGYGSSCGN-LNLAQNVSYAFNSYYQVSN 422

Query: 372 GMGATCDFMGVATLTGADPS 431
            + + C F G++ ++  DPS
Sbjct: 423 QLDSACKFPGLSIVSTRDPS 442



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>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 477

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 198 YCVCKSDA--NPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNA 371
           +CV K +   +   +  A+ YAC  G DCT +     C   +    + SYA +SYYQ   
Sbjct: 362 WCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCAN-LDGKQNISYAFNSYYQIQD 419

Query: 372 GMGATCDFMGVATLTGADPS 431
            +   C F  ++ +T  DPS
Sbjct: 420 QLDTACKFPNISEVTKTDPS 439



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>EPD1_CANMA (P56092) Protein EPD1 precursor (Essential for pseudohyphal|
           development 1)
          Length = 549

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = +3

Query: 186 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGP-----CFQPISVVAHCSYAXH 350
           S ++ CV   + +        DY C K  DC+ I +N        + P       S+  +
Sbjct: 373 SSSLKCVVADNVSTDDYSDLFDYVCAK-IDCSGINANATTGDYGAYSPCGAKDKLSFVLN 431

Query: 351 SYYQKNAGMGATCDFMGVATLTGA 422
            YY++     + CDF G A+L  A
Sbjct: 432 LYYEEQNESKSACDFSGSASLQSA 455



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>GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precursor|
           (Glycoprotein GP115)
          Length = 559

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 201 CVCKSDANPVAMQKAIDYACGKGADCTQITSNGPC-----FQPISVVAHCSYAXHSYYQK 365
           CV   D +    +   ++ C +  DC+ I++NG       +   +     S+  + YY+K
Sbjct: 379 CVVSDDVDSDDYETLFNWICNE-VDCSGISANGTAGKYGAYSFCTPKEQLSFVMNLYYEK 437

Query: 366 NAGMGATCDFMGVATLTGA 422
           + G  + C F G ATL  A
Sbjct: 438 SGGSKSDCSFSGSATLQTA 456



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>PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regulated protein 2)|
          Length = 546

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
 Frame = +3

Query: 186 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGP-----CFQPISVVAHCSYAXH 350
           S ++ CV     +         Y C K  DC  I +NG       + P       S+  +
Sbjct: 375 SASLKCVVDDKVDSDDYSDLFSYICAK-IDCDGINANGTTGEYGAYSPCHSKDKLSFVMN 433

Query: 351 SYYQKNAGMGATCDFMGVATLTGA 422
            YY++N    + CDF G A+L  A
Sbjct: 434 LYYEQNKESKSACDFGGSASLQSA 457



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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 204 VCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYAXHSYYQKNAGMGA 383
           +C   ++P   Q +   AC   + C Q      C +PI  V  CS A     QK++   A
Sbjct: 137 ICSGASSPCCQQSSCQSACCTFSPCQQACCVPICCKPICCVPVCSGASSLCCQKSSCQPA 196

Query: 384 TC 389
            C
Sbjct: 197 CC 198



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>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor|
          Length = 4007

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +3

Query: 201 CVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQP-ISVVAHCSYAXHSYYQKNAGM 377
           C+C         Q  +   CGKG   ++   +G C +  +S    CSY     YQ     
Sbjct: 242 CICDRGEVRCHKQACLPLRCGKGQ--SRARRHGQCCEECVSPAGSCSYDGVVRYQDEMWK 299

Query: 378 GATCDF 395
           G+ C+F
Sbjct: 300 GSACEF 305



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>EPD2_CANMA (O74137) Protein EPD2 precursor (Essential for pseudohyphal|
           development 2)
          Length = 549

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
 Frame = +3

Query: 186 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPC-----FQPISVVAHCSYAXH 350
           S +  CV   D +           CG   DC  I++NG       F   S     SY  +
Sbjct: 385 SQSFNCVVADDVDAEDYSTLFGEVCGY-IDCGDISANGNTGEYGGFSFCSDKDRLSYVLN 443

Query: 351 SYYQKNAGMGATCDFMGVATL 413
            YY         CDF G A++
Sbjct: 444 QYYHDQNERADACDFAGSASI 464



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>YLM2_SCHPO (Q9P378) Hypothetical protein C19B12.02c precursor|
          Length = 542

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
 Frame = +3

Query: 201 CVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCS------YAXHSYYQ 362
           CV   D +         Y C +   C  IT+NG         ++C       Y   +YY 
Sbjct: 376 CVINDDVSSDDYSDLFSYVCNE-ISCDGITANGTYPGQYGSYSYCDAKQQLDYVLDAYYS 434

Query: 363 KNAGMGATCDFMGVATLTGA 422
                   CDF G ATL  A
Sbjct: 435 AKGD----CDFSGSATLVSA 450



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>PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regulated protein 1)|
          Length = 548

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +3

Query: 186 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCS------YAX 347
           S ++ CV   D +           CG   DC+ I+++G   +   V + CS      Y  
Sbjct: 385 SKSLECVVADDVDKEDYGDLFGQVCGY-IDCSAISADGSKGE-YGVASFCSDKDRLSYVL 442

Query: 348 HSYYQKNAGMGATCDFMGVATL 413
           + YY       + CDF G A++
Sbjct: 443 NQYYLDQDKKSSACDFKGSASI 464



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>NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor|
          Length = 1278

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 186 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITS 293
           ++AMY  C+    P +  KA+   CGK AD    T+
Sbjct: 153 ANAMYNACRDVEAPSSNDKALGLLCGKDADACNATN 188



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>RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 434

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
 Frame = +2

Query: 2   LHTTTPLHSLPRHADXXXXXXXXXATSALTSAAREELELHPAACCNGGSSGPHALAR--- 172
           L T   +H LP  A+         A  ALT  A +  EL    C   G    H L R   
Sbjct: 216 LETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPE 275

Query: 173 -HVRRLRCDVLRVQVGRE 223
             V  + CD  R++  RE
Sbjct: 276 SQVVAIDCDETRLKRVRE 293



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>DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide|
           dehydrogenase)
          Length = 479

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
 Frame = +2

Query: 14  TPLHSLPRHADXXXXXXXXXATSALTSAAREELELHPAACCNGGSSGPHALARHVRR--- 184
           T +   PR A             AL     +E+ +      NG ++G  AL   V +   
Sbjct: 210 TVVEFAPRCAPTLDSDVTDALVGALKRNGEDEVPMTGIEGVNGTNNGSIALTLEVEQAGG 269

Query: 185 ----LRCDVLRVQVGREP 226
               L CD L V VGR P
Sbjct: 270 QAETLHCDALLVSVGRRP 287



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>VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein 2)|
           (Loop-tail-associated protein) (Loop-tail protein 1)
          Length = 521

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 167 QEHEDQRSRHCSKQRDGAR 111
           ++H D+R RH SK RDG+R
Sbjct: 21  RKHRDRRDRHRSKSRDGSR 39



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>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2813

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -2

Query: 226 GFASDLHTQYIASEPANMASKSMRTRGAAIAASSGMELELFSRRRGQSTSSWQAKR 59
           GF  D+  QY+  + A++++ S+     A+  SS      +SR  G+ST S Q++R
Sbjct: 169 GFFLDV-AQYLLPDEADISTLSLARASPALTRSSPAPGSGYSRSGGRSTPSTQSQR 223



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>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
           protein 10.5) (High sulfur keratin-associated protein
           10.5) (Keratin-associated protein 18-5)
           (Keratin-associated protein 18.5)
          Length = 271

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
 Frame = +3

Query: 207 CKSDANPVAMQKAIDYACGKGADCTQ-----ITSNGPCFQPISVVAHCSYAXHSYYQKNA 371
           C  D++      +    C   + C Q     +     CF+PI  V  CS A  S  Q+++
Sbjct: 145 CSEDSSSCCQHSSCQPTCCTSSPCQQSCYVPVCCKPVCFKPICCVPVCSGASTSCCQQSS 204

Query: 372 GMGATC 389
              A C
Sbjct: 205 CQPACC 210



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>VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein 2) (Strabismus|
           1) (Loop-tail protein 1 homolog)
          Length = 521

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 167 QEHEDQRSRHCSKQRDGAR 111
           ++H D+R RH SK RDG R
Sbjct: 21  RKHRDRRDRHRSKSRDGGR 39



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>HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1|
          Length = 328

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 207 CKSDANPVAMQKAIDYACGKGA--DCTQITSNGPCFQPISVVAHCS 338
           C+SDA PVA+Q A     G GA   C  + +  P   P +  A  S
Sbjct: 28  CRSDARPVALQPAFPLGNGDGAFVSCLPLAAARPSPSPPAAPARPS 73



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>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
           protein 10.4) (High sulfur keratin-associated protein
           10.4) (Keratin-associated protein 18-4)
           (Keratin-associated protein 18.4)
          Length = 401

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
 Frame = +3

Query: 204 VCKSDANPVAMQKAIDYACGKGADCTQ-----ITSNGPCFQPISVVAHCSYAXHSYYQKN 368
           VC  D++    Q +   AC   + C Q     +     C +P+  V  CS A     Q++
Sbjct: 242 VCSEDSSSCCQQSSCQPACCTSSPCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQS 301

Query: 369 AGMGATC 389
           +   A C
Sbjct: 302 SCQPACC 308



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>PTFC_BACAM (P41029) Fructose permease IIC component (PTS system|
           fructose-specific EIIC component) (Fragment)
          Length = 304

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 297 GPCFQPISVVAHCSYAXHSYYQKNAGMGATCDFMGVATLT-GADP 428
           G    P+ +    ++  H + +++   G TC FMG A +T GA P
Sbjct: 186 GGMVPPLGIALATTFFRHKFSKRDREAGITCYFMGAAFVTEGAIP 230



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>CALD1_HUMAN (Q05682) Caldesmon (CDM)|
          Length = 793

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 208 HTQYIASEPANMASKSMRTRGAAIAASSGMELELFSRRRGQSTS 77
           HT+   S P   AS   +    A    +G  LE   RRRG++ S
Sbjct: 505 HTENTFSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETES 548



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>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 106

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 234 SPPGSRPTCTRSTSHLSRRTWRARA*GPEEPPLQQAAGWXXXXSL 100
           S P  RP  TR      RR WRAR     +  +Q  +GW     L
Sbjct: 15  SNPPPRPEGTRQARRNRRRRWRAR-----QRQIQSLSGWILSTFL 54



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>MBD1_HUMAN (Q9UIS9) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1) (Protein containing methyl-CpG-binding
           domain 1)
          Length = 605

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 16  PTPLSPTPRRLAPSPSLLASY*CSD 90
           P P  P PR LAPSP     Y C D
Sbjct: 298 PEPTEPHPRALAPSPPAEFIYYCVD 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,713,827
Number of Sequences: 219361
Number of extensions: 855713
Number of successful extensions: 3432
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3426
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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